Literature DB >> 22719593

Ethyl 2-methyl-6-(propan-2-yl-amino)-4-sulfanyl-idene-3H,11H-pyrimido[1,6-c]quinazoline-1-carboxyl-ate.

Hong-Xia Li, Yu-Su Song, Yong-Nian Qu, Jiang-Bing Lu, Hong-Mei Wang.   

Abstract

The title compound, C(18)H(22)N(4)O(2)S, contains a substituted pyrimidine ring fused to both a benzene ring and a substituted thioxopyrimidine ring. The pyrimidine and thioxopyrimidine rings adopt distorted chair conformations. In the crystal, adjacent mol-ecules are linked by pairs of N-H⋯S and N-H⋯O hydrogen bonds to generate centrosymmetric R(2) (2)(8) and R(2) (2)(16) loops, respectively. This combination leads to [100] chains of mol-ecules.

Entities:  

Year:  2012        PMID: 22719593      PMCID: PMC3379395          DOI: 10.1107/S1600536812019952

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further synthetic details, see: Li et al. (2007 ▶, 2008 ▶); Huang et al. (2009 ▶); Zeng et al. (2010 ▶). For a related structure, see: Li et al. (2010 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C18H22N4O2S M = 358.46 Monoclinic, a = 9.4128 (3) Å b = 10.5636 (5) Å c = 19.2052 (6) Å β = 102.347 (1)° V = 1865.46 (12) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 298 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.955, T max = 0.962 12093 measured reflections 3857 independent reflections 3014 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.139 S = 1.03 3857 reflections 236 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019952/hb6711sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019952/hb6711Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019952/hb6711Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H22N4O2SF(000) = 760.0
Mr = 358.46Dx = 1.288 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4329 reflections
a = 9.4128 (3) Åθ = 2.2–27.7°
b = 10.5636 (5) ŵ = 0.19 mm1
c = 19.2052 (6) ÅT = 298 K
β = 102.347 (1)°Block, colorless
V = 1865.46 (12) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker SMART CCD diffractometer3857 independent reflections
Radiation source: fine-focus sealed tube3014 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.076
φ and ω scansθmax = 26.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.955, Tmax = 0.962k = −13→10
12093 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0772P)2 + 0.1069P] where P = (Fo2 + 2Fc2)/3
3857 reflections(Δ/σ)max = 0.025
236 parametersΔρmax = 0.34 e Å3
2 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.09011 (18)0.72990 (17)0.84262 (9)0.0364 (4)
C20.0719 (2)0.67844 (18)0.77505 (10)0.0462 (5)
H20.02940.59910.76560.055*
C30.1170 (3)0.7450 (2)0.72128 (10)0.0570 (6)
H30.10420.71070.67580.068*
C40.1809 (3)0.8623 (2)0.73568 (11)0.0558 (6)
H40.21200.90670.69980.067*
C50.1991 (2)0.91431 (19)0.80297 (10)0.0494 (5)
H50.24220.99350.81200.059*
C60.1535 (2)0.84940 (17)0.85729 (9)0.0380 (4)
C70.17531 (19)0.83292 (16)0.97816 (9)0.0348 (4)
C80.04635 (19)0.66650 (16)0.90571 (9)0.0345 (4)
H8−0.04370.70610.91260.041*
C90.2171 (2)1.00033 (18)1.06939 (10)0.0466 (5)
H90.14701.05591.03870.056*
C100.1933 (3)1.0103 (2)1.14433 (12)0.0612 (6)
H10A0.09630.98331.14530.092*
H10B0.20631.09651.16010.092*
H10C0.26210.95731.17530.092*
C110.3679 (3)1.0396 (2)1.06328 (15)0.0795 (8)
H11A0.43850.98971.09530.119*
H11B0.38231.12751.07540.119*
H11C0.37911.02651.01530.119*
C120.28831 (19)0.62791 (16)0.97962 (9)0.0343 (4)
C130.13802 (19)0.44969 (16)0.92654 (9)0.0363 (4)
C140.02360 (19)0.52521 (16)0.90196 (9)0.0355 (4)
C150.1435 (2)0.30767 (17)0.92606 (12)0.0502 (5)
H15A0.11030.27530.96650.075*
H15B0.24170.28040.92840.075*
H15C0.08210.27650.88300.075*
C16−0.1233 (2)0.47530 (18)0.87161 (9)0.0404 (4)
C17−0.3692 (2)0.5353 (2)0.82596 (12)0.0552 (5)
H17A−0.41000.49050.86120.066*
H17B−0.37450.48060.78490.066*
C18−0.4504 (3)0.6539 (3)0.8048 (2)0.0979 (11)
H18A−0.44310.70770.84570.147*
H18B−0.55080.63450.78560.147*
H18C−0.41010.69660.76930.147*
S10.44958 (5)0.68615 (5)1.01900 (3)0.04898 (19)
N10.16807 (17)0.90727 (14)0.92474 (8)0.0399 (4)
N20.18611 (17)0.86974 (14)1.04561 (8)0.0387 (4)
H2A0.191 (2)0.8115 (14)1.0774 (8)0.046*
N30.16359 (15)0.69732 (13)0.96840 (7)0.0326 (3)
N40.27056 (16)0.50620 (14)0.95704 (8)0.0393 (4)
H4A0.3503 (15)0.4619 (16)0.9646 (10)0.047*
O1−0.21898 (14)0.57011 (13)0.85569 (8)0.0525 (4)
O2−0.15658 (16)0.36556 (14)0.86187 (8)0.0569 (4)
U11U22U33U12U13U23
C10.0333 (9)0.0385 (10)0.0363 (9)0.0059 (8)0.0045 (7)0.0066 (7)
C20.0516 (12)0.0455 (11)0.0392 (10)0.0030 (9)0.0045 (9)0.0016 (8)
C30.0744 (15)0.0612 (14)0.0352 (10)0.0142 (12)0.0113 (10)0.0055 (9)
C40.0695 (15)0.0559 (13)0.0460 (11)0.0109 (11)0.0215 (10)0.0180 (10)
C50.0567 (13)0.0425 (11)0.0509 (11)0.0035 (9)0.0163 (10)0.0131 (9)
C60.0387 (10)0.0348 (10)0.0401 (9)0.0068 (8)0.0077 (8)0.0051 (7)
C70.0306 (9)0.0329 (9)0.0409 (9)0.0019 (7)0.0077 (7)−0.0004 (7)
C80.0298 (8)0.0366 (10)0.0357 (8)0.0006 (7)0.0041 (7)0.0004 (7)
C90.0554 (12)0.0361 (10)0.0481 (11)0.0040 (9)0.0107 (9)−0.0051 (8)
C100.0690 (15)0.0603 (14)0.0544 (12)0.0072 (12)0.0140 (11)−0.0168 (10)
C110.0865 (19)0.0674 (17)0.0933 (19)−0.0312 (14)0.0387 (16)−0.0277 (14)
C120.0369 (9)0.0324 (9)0.0338 (8)0.0020 (7)0.0077 (7)0.0034 (7)
C130.0379 (10)0.0346 (9)0.0379 (9)−0.0025 (7)0.0113 (7)0.0015 (7)
C140.0362 (9)0.0358 (10)0.0348 (9)−0.0028 (7)0.0085 (7)0.0006 (7)
C150.0483 (12)0.0375 (11)0.0662 (13)−0.0022 (9)0.0150 (10)0.0009 (9)
C160.0414 (10)0.0440 (11)0.0356 (9)−0.0047 (9)0.0074 (8)0.0039 (8)
C170.0373 (11)0.0642 (14)0.0587 (12)−0.0093 (10)−0.0021 (9)−0.0010 (10)
C180.0541 (16)0.0719 (18)0.148 (3)0.0067 (13)−0.0231 (17)−0.0301 (18)
S10.0332 (3)0.0401 (3)0.0684 (4)0.00183 (19)−0.0007 (2)−0.0082 (2)
N10.0450 (9)0.0325 (8)0.0420 (8)0.0024 (7)0.0088 (7)0.0039 (6)
N20.0451 (9)0.0327 (8)0.0389 (8)0.0017 (7)0.0104 (7)−0.0004 (6)
N30.0310 (7)0.0323 (8)0.0335 (7)0.0012 (6)0.0043 (6)0.0010 (6)
N40.0338 (8)0.0320 (8)0.0507 (9)0.0033 (6)0.0057 (7)0.0006 (7)
O10.0345 (7)0.0504 (9)0.0675 (9)−0.0043 (6)−0.0002 (6)−0.0017 (7)
O20.0522 (9)0.0447 (9)0.0673 (9)−0.0126 (7)−0.0016 (7)0.0034 (7)
C1—C21.384 (2)C11—H11A0.9600
C1—C61.399 (3)C11—H11B0.9600
C1—C81.516 (2)C11—H11C0.9600
C2—C31.389 (3)C12—N41.356 (2)
C2—H20.9300C12—N31.362 (2)
C3—C41.380 (3)C12—S11.6625 (18)
C3—H30.9300C13—C141.342 (2)
C4—C51.381 (3)C13—N41.394 (2)
C4—H40.9300C13—C151.501 (2)
C5—C61.390 (3)C14—C161.478 (2)
C5—H50.9300C15—H15A0.9600
C6—N11.412 (2)C15—H15B0.9600
C7—N11.282 (2)C15—H15C0.9600
C7—N21.335 (2)C16—O21.205 (2)
C7—N31.446 (2)C16—O11.338 (2)
C8—N31.485 (2)C17—O11.454 (2)
C8—C141.507 (2)C17—C181.479 (3)
C8—H80.9800C17—H17A0.9700
C9—N21.463 (2)C17—H17B0.9700
C9—C101.507 (3)C18—H18A0.9600
C9—C111.507 (3)C18—H18B0.9600
C9—H90.9800C18—H18C0.9600
C10—H10A0.9600N2—H2A0.861 (9)
C10—H10B0.9600N4—H4A0.870 (9)
C10—H10C0.9600
C2—C1—C6120.35 (16)H11A—C11—H11C109.5
C2—C1—C8125.15 (16)H11B—C11—H11C109.5
C6—C1—C8114.50 (15)N4—C12—N3114.64 (15)
C1—C2—C3120.16 (19)N4—C12—S1122.31 (13)
C1—C2—H2119.9N3—C12—S1123.04 (13)
C3—C2—H2119.9C14—C13—N4118.16 (16)
C4—C3—C2119.69 (19)C14—C13—C15128.17 (17)
C4—C3—H3120.2N4—C13—C15113.67 (16)
C2—C3—H3120.2C13—C14—C16122.63 (17)
C3—C4—C5120.42 (19)C13—C14—C8118.46 (16)
C3—C4—H4119.8C16—C14—C8118.91 (15)
C5—C4—H4119.8C13—C15—H15A109.5
C4—C5—C6120.66 (19)C13—C15—H15B109.5
C4—C5—H5119.7H15A—C15—H15B109.5
C6—C5—H5119.7C13—C15—H15C109.5
C5—C6—C1118.72 (17)H15A—C15—H15C109.5
C5—C6—N1119.32 (17)H15B—C15—H15C109.5
C1—C6—N1121.92 (15)O2—C16—O1122.99 (17)
N1—C7—N2125.29 (16)O2—C16—C14126.50 (18)
N1—C7—N3120.91 (15)O1—C16—C14110.52 (16)
N2—C7—N3113.72 (15)O1—C17—C18107.19 (18)
N3—C8—C14109.22 (13)O1—C17—H17A110.3
N3—C8—C1105.62 (13)C18—C17—H17A110.3
C14—C8—C1117.33 (14)O1—C17—H17B110.3
N3—C8—H8108.1C18—C17—H17B110.3
C14—C8—H8108.1H17A—C17—H17B108.5
C1—C8—H8108.1C17—C18—H18A109.5
N2—C9—C10107.66 (17)C17—C18—H18B109.5
N2—C9—C11111.32 (17)H18A—C18—H18B109.5
C10—C9—C11112.96 (19)C17—C18—H18C109.5
N2—C9—H9108.3H18A—C18—H18C109.5
C10—C9—H9108.3H18B—C18—H18C109.5
C11—C9—H9108.3C7—N1—C6116.54 (15)
C9—C10—H10A109.5C7—N2—C9123.11 (15)
C9—C10—H10B109.5C7—N2—H2A117.5 (13)
H10A—C10—H10B109.5C9—N2—H2A118.4 (13)
C9—C10—H10C109.5C12—N3—C7118.27 (14)
H10A—C10—H10C109.5C12—N3—C8118.45 (14)
H10B—C10—H10C109.5C7—N3—C8110.19 (13)
C9—C11—H11A109.5C12—N4—C13125.35 (15)
C9—C11—H11B109.5C12—N4—H4A114.4 (14)
H11A—C11—H11B109.5C13—N4—H4A120.2 (14)
C9—C11—H11C109.5C16—O1—C17116.80 (15)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.86 (1)2.26 (1)3.102 (2)165 (2)
N4—H4A···S1ii0.87 (1)2.42 (1)3.2804 (15)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.86 (1)2.26 (1)3.102 (2)165 (2)
N4—H4A⋯S1ii0.87 (1)2.42 (1)3.2804 (15)172 (2)

Symmetry codes: (i) ; (ii) .

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