Literature DB >> 22719554

2-[(Cyclo-hex-3-en-1-ylmeth-oxy)meth-yl]-6-phenyl-1,2,4-triazine-3,5(2H,4H)-dione.

Nasser R El-Brollosy, Mohamed I Attia, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title 1,2,4-triazine derivative, C(17)H(19)N(3)O(3), the heterocyclic ring is planar (r.m.s. deviation = 0.040 Å) and effectively coplanar with the adjacent phenyl ring [dihedral angle = 4.5 (2)°] but almost perpendicular to the (cyclo-hex-3-en-1-ylmeth-oxy)methyl residue [N-N-C-O torsion angle = 71.6 (5)°], so that the mol-ecule has an 'L' shape. Supra-molecular chains along [001] are formed in the crystal via N-H⋯O hydrogen bonds where the acceptor O atom is the ether O atom. The adjacent carbonyl O atom forms a complementary C-H⋯O contact resulting in the formation of a seven-membered {⋯HNCO⋯HCO} heterosynthon; the second carbonyl O atom forms an intra-molecular C-H⋯O contact. Chains are connected into a supra-molecular layer in the ac plane by π-π inter-actions [ring centroid-centroid distance = 3.488 (3) Å]. The central atom in the -CH(2)CH(2)C(H)= residue of the cyclo-hexene ring is disordered over two sites, with the major component having a site-occupancy factor of 0.51 (2).

Entities:  

Year:  2012        PMID: 22719554      PMCID: PMC3379356          DOI: 10.1107/S1600536812021198

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential medicinal applications of 1,2,4-triazines, see: Ban et al. (2010 ▶); Irannejad et al. (2010 ▶); Sangshetti & Shinde (2010 ▶). For the synthesis, see: El-Brollosy (2008 ▶).

Experimental

Crystal data

C17H19N3O3 M = 313.35 Monoclinic, a = 4.7924 (6) Å b = 13.7083 (19) Å c = 11.8293 (15) Å β = 101.538 (12)° V = 761.43 (17) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.35 × 0.15 × 0.03 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.806, T max = 1.000 4230 measured reflections 1757 independent reflections 1158 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.133 S = 1.04 1757 reflections 212 parameters 4 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021198/su2425sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021198/su2425Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021198/su2425Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H19N3O3F(000) = 332
Mr = 313.35Dx = 1.367 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 801 reflections
a = 4.7924 (6) Åθ = 2.3–27.5°
b = 13.7083 (19) ŵ = 0.10 mm1
c = 11.8293 (15) ÅT = 100 K
β = 101.538 (12)°Plate, colourless
V = 761.43 (17) Å30.35 × 0.15 × 0.03 mm
Z = 2
Agilent SuperNova Dual diffractometer with an Atlas detector1757 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1158 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.078
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.3°
ω scanh = −5→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −17→17
Tmin = 0.806, Tmax = 1.000l = −15→15
4230 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0421P)2] where P = (Fo2 + 2Fc2)/3
1757 reflections(Δ/σ)max = 0.002
212 parametersΔρmax = 0.24 e Å3
4 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.4970 (7)0.7062 (3)0.4998 (3)0.0321 (9)
O21.2011 (7)0.4812 (3)0.5519 (3)0.0245 (8)
O30.9583 (7)0.3645 (2)0.8023 (3)0.0228 (8)
N10.8476 (9)0.5948 (3)0.5278 (4)0.0205 (9)
H10.86960.60520.45670.025*
N20.9682 (7)0.5123 (3)0.7000 (3)0.0190 (10)
N30.7856 (7)0.5669 (3)0.7480 (3)0.0194 (9)
C10.4436 (9)0.6924 (4)0.7489 (4)0.0201 (11)
C20.2789 (10)0.7697 (4)0.6974 (5)0.0253 (12)
H20.28440.78720.62020.030*
C30.1041 (10)0.8224 (4)0.7579 (5)0.0275 (13)
H3−0.00720.87540.72210.033*
C40.0957 (11)0.7960 (4)0.8709 (5)0.0244 (12)
H4−0.02110.83150.91250.029*
C50.2553 (10)0.7192 (4)0.9223 (5)0.0260 (12)
H50.24580.70110.99890.031*
C60.4310 (11)0.6673 (4)0.8634 (5)0.0251 (12)
H60.54280.61480.90040.030*
C70.6321 (9)0.6348 (4)0.6886 (4)0.0205 (11)
C80.6423 (10)0.6503 (4)0.5652 (4)0.0209 (11)
C91.0207 (10)0.5252 (4)0.5896 (4)0.0185 (11)
C101.1326 (10)0.4421 (4)0.7787 (4)0.0217 (11)
H10A1.28880.41590.74410.026*
H10B1.21880.47520.85170.026*
C110.8986 (11)0.2912 (4)0.7141 (5)0.0252 (12)
H11A1.07780.27010.69200.030*
H11B0.77150.31820.64490.030*
C120.7570 (10)0.2050 (4)0.7590 (4)0.0221 (11)
H120.57640.22830.78010.027*
C130.6801 (13)0.1266 (4)0.6644 (5)0.0376 (14)
H13A0.54510.15450.59800.045*
H13B0.85440.10700.63730.045*
C140.5488 (12)0.0383 (4)0.7073 (6)0.0365 (14)
H140.4158−0.00030.65570.044*
C150.6234 (12)0.0133 (4)0.8234 (6)0.0360 (14)
H150.5694−0.04900.84680.043*
C160.779 (5)0.0777 (12)0.9093 (9)0.032 (5)0.51 (2)
H16A0.91650.03820.96440.039*0.51 (2)
H16B0.64290.10660.95290.039*0.51 (2)
C16'0.837 (5)0.0637 (12)0.9049 (10)0.032 (5)0.49
H16C1.00330.01990.92660.039*0.49 (2)
H16D0.76020.07580.97530.039*0.49 (2)
C170.9405 (10)0.1602 (4)0.8654 (5)0.0253 (12)
H17A1.11880.13470.84630.030*
H17B0.99120.21050.92610.030*
U11U22U33U12U13U23
O10.032 (2)0.039 (2)0.026 (2)0.0098 (18)0.0082 (17)0.0077 (19)
O20.0274 (18)0.027 (2)0.0197 (19)0.0025 (16)0.0073 (16)−0.0009 (16)
O30.032 (2)0.0200 (19)0.0175 (18)−0.0002 (16)0.0074 (16)−0.0005 (15)
N10.028 (2)0.021 (2)0.014 (2)0.0002 (18)0.0081 (18)0.0006 (17)
N20.024 (2)0.018 (2)0.015 (2)0.0027 (18)0.0042 (19)−0.0017 (19)
N30.016 (2)0.022 (2)0.021 (2)−0.0021 (18)0.0038 (18)−0.0020 (19)
C10.017 (2)0.020 (3)0.023 (3)−0.006 (2)0.004 (2)−0.002 (2)
C20.029 (3)0.024 (3)0.023 (3)−0.007 (2)0.005 (2)−0.002 (2)
C30.022 (3)0.023 (3)0.037 (3)0.002 (2)0.005 (3)−0.002 (3)
C40.027 (3)0.022 (3)0.026 (3)−0.003 (2)0.011 (2)−0.008 (2)
C50.025 (3)0.029 (3)0.025 (3)−0.006 (2)0.008 (2)−0.002 (2)
C60.024 (3)0.026 (3)0.026 (3)−0.005 (2)0.006 (2)−0.001 (3)
C70.017 (3)0.021 (3)0.023 (3)−0.004 (2)0.004 (2)0.001 (2)
C80.025 (3)0.021 (3)0.017 (3)−0.002 (2)0.005 (2)−0.001 (2)
C90.022 (3)0.020 (3)0.014 (3)−0.005 (2)0.004 (2)0.000 (2)
C100.024 (3)0.021 (3)0.021 (3)−0.005 (2)0.005 (2)0.002 (2)
C110.035 (3)0.022 (3)0.019 (2)−0.001 (2)0.005 (2)−0.003 (2)
C120.021 (2)0.021 (3)0.024 (3)0.003 (2)0.004 (2)0.001 (2)
C130.047 (3)0.027 (3)0.033 (3)−0.004 (3)−0.006 (3)−0.004 (3)
C140.034 (3)0.030 (3)0.048 (4)−0.011 (3)0.012 (3)−0.011 (3)
C150.033 (3)0.021 (3)0.053 (4)−0.003 (3)0.007 (3)0.004 (3)
C160.014 (8)0.029 (6)0.055 (5)0.013 (6)0.008 (4)0.012 (4)
C16'0.014 (8)0.029 (6)0.055 (5)0.013 (6)0.008 (4)0.012 (4)
C170.028 (3)0.022 (3)0.025 (3)−0.002 (2)0.002 (2)0.005 (2)
O1—C81.207 (6)C10—H10A0.9900
O2—C91.210 (5)C10—H10B0.9900
O3—C101.415 (6)C11—C121.510 (7)
O3—C111.435 (6)C11—H11A0.9900
N1—C91.375 (6)C11—H11B0.9900
N1—C81.385 (6)C12—C171.514 (7)
N1—H10.8800C12—C131.543 (8)
N2—N31.359 (5)C12—H121.0000
N2—C91.390 (5)C13—C141.499 (8)
N2—C101.456 (6)C13—H13A0.9900
N3—C71.301 (6)C13—H13B0.9900
C1—C21.387 (7)C14—C151.390 (9)
C1—C61.410 (7)C14—H140.9500
C1—C71.486 (6)C15—C16'1.435 (11)
C2—C31.406 (7)C15—C161.437 (11)
C2—H20.9500C15—H150.9500
C3—C41.392 (7)C16—C171.521 (9)
C3—H30.9500C16—H16A0.9900
C4—C51.371 (7)C16—H16B0.9900
C4—H40.9500C16'—C171.519 (10)
C5—C61.391 (7)C16'—H16C0.9900
C5—H50.9500C16'—H16D0.9900
C6—H60.9500C17—H17A0.9900
C7—C81.486 (6)C17—H17B0.9900
C10—O3—C11115.1 (3)O3—C11—H11B109.8
C9—N1—C8127.1 (4)C12—C11—H11B109.8
C9—N1—H1116.4H11A—C11—H11B108.3
C8—N1—H1116.4C11—C12—C17112.5 (4)
N3—N2—C9125.1 (4)C11—C12—C13110.4 (4)
N3—N2—C10114.1 (4)C17—C12—C13109.5 (4)
C9—N2—C10120.6 (4)C11—C12—H12108.1
C7—N3—N2120.7 (4)C17—C12—H12108.1
C2—C1—C6118.6 (5)C13—C12—H12108.1
C2—C1—C7122.8 (4)C14—C13—C12111.9 (5)
C6—C1—C7118.6 (4)C14—C13—H13A109.2
C1—C2—C3120.9 (5)C12—C13—H13A109.2
C1—C2—H2119.6C14—C13—H13B109.2
C3—C2—H2119.6C12—C13—H13B109.2
C4—C3—C2119.3 (5)H13A—C13—H13B107.9
C4—C3—H3120.3C15—C14—C13119.4 (5)
C2—C3—H3120.3C15—C14—H14120.3
C5—C4—C3120.3 (5)C13—C14—H14120.3
C5—C4—H4119.9C14—C15—C16'123.6 (6)
C3—C4—H4119.9C14—C15—C16122.8 (6)
C4—C5—C6120.7 (5)C14—C15—H15118.6
C4—C5—H5119.6C16'—C15—H15115.8
C6—C5—H5119.6C16—C15—H15118.6
C5—C6—C1120.2 (5)C15—C16—C17116.2 (8)
C5—C6—H6119.9C15—C16—H16A108.2
C1—C6—H6119.9C17—C16—H16A108.2
N3—C7—C1117.0 (4)C15—C16—H16B108.2
N3—C7—C8120.4 (4)C17—C16—H16B108.2
C1—C7—C8122.6 (4)H16A—C16—H16B107.4
O1—C8—N1120.0 (4)C15—C16'—C17116.5 (8)
O1—C8—C7126.4 (5)C15—C16'—H16C108.2
N1—C8—C7113.6 (4)C17—C16'—H16C108.2
O2—C9—N1123.3 (4)C15—C16'—H16D108.2
O2—C9—N2124.0 (4)C17—C16'—H16D108.2
N1—C9—N2112.6 (4)H16C—C16'—H16D107.3
O3—C10—N2111.0 (4)C16'—C17—C12116.0 (7)
O3—C10—H10A109.4C16—C17—C12109.6 (8)
N2—C10—H10A109.4C16'—C17—H17A96.5
O3—C10—H10B109.4C16—C17—H17A109.8
N2—C10—H10B109.4C12—C17—H17A109.7
H10A—C10—H10B108.0C16'—C17—H17B115.5
O3—C11—C12109.3 (4)C16—C17—H17B109.7
O3—C11—H11A109.8C12—C17—H17B109.7
C12—C11—H11A109.8H17A—C17—H17B108.2
C9—N2—N3—C73.3 (6)N3—N2—C9—N1−5.5 (6)
C10—N2—N3—C7177.7 (4)C10—N2—C9—N1−179.5 (4)
C6—C1—C2—C30.4 (7)C11—O3—C10—N279.3 (5)
C7—C1—C2—C3−179.8 (5)N3—N2—C10—O371.6 (5)
C1—C2—C3—C4−0.4 (7)C9—N2—C10—O3−113.8 (4)
C2—C3—C4—C5−0.3 (8)C10—O3—C11—C12170.0 (4)
C3—C4—C5—C61.0 (8)O3—C11—C12—C17−59.4 (5)
C4—C5—C6—C1−1.0 (7)O3—C11—C12—C13177.9 (4)
C2—C1—C6—C50.3 (7)C11—C12—C13—C14177.9 (5)
C7—C1—C6—C5−179.5 (4)C17—C12—C13—C1453.4 (6)
N2—N3—C7—C1−178.5 (4)C12—C13—C14—C15−29.4 (7)
N2—N3—C7—C83.3 (7)C13—C14—C15—C16'−4.5 (16)
C2—C1—C7—N3177.0 (5)C13—C14—C15—C1612.3 (16)
C6—C1—C7—N3−3.2 (6)C14—C15—C16—C17−19 (3)
C2—C1—C7—C8−4.9 (7)C16'—C15—C16—C1779 (3)
C6—C1—C7—C8174.9 (4)C14—C15—C16'—C1712 (3)
C9—N1—C8—O1−177.0 (5)C16—C15—C16'—C17−79 (3)
C9—N1—C8—C74.6 (7)C15—C16'—C17—C1679 (3)
N3—C7—C8—O1174.8 (5)C15—C16'—C17—C1215 (2)
C1—C7—C8—O1−3.2 (8)C15—C16—C17—C16'−78 (3)
N3—C7—C8—N1−6.9 (6)C15—C16—C17—C1243 (2)
C1—C7—C8—N1175.1 (4)C11—C12—C17—C16'−170.4 (12)
C8—N1—C9—O2−178.0 (5)C13—C12—C17—C16'−47.1 (12)
C8—N1—C9—N21.1 (7)C11—C12—C17—C16177.0 (10)
N3—N2—C9—O2173.6 (4)C13—C12—C17—C16−59.8 (11)
C10—N2—C9—O2−0.4 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.882.002.877 (5)174
C2—H2···O10.952.212.880 (7)127
C10—H10B···O2ii0.992.463.352 (6)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.882.002.877 (5)174
C2—H2⋯O10.952.212.880 (7)127
C10—H10B⋯O2ii0.992.463.352 (6)150

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-alkylthio-1,2,4-triazine dimers with potent antimalarial activity.

Authors:  Kung Ban; Sandra Duffy; Yelena Khakham; Vicky M Avery; Andrew Hughes; Oliver Montagnat; Kasiram Katneni; Eileen Ryan; Jonathan B Baell
Journal:  Bioorg Med Chem Lett       Date:  2010-08-19       Impact factor: 2.823

3.  Synthesis and in vitro evaluation of novel 1,2,4-triazine derivatives as neuroprotective agents.

Authors:  Hamid Irannejad; Mohsen Amini; Fariba Khodagholi; Niloufar Ansari; Solaleh Khoramian Tusi; Mohammad Sharifzadeh; Abbas Shafiee
Journal:  Bioorg Med Chem       Date:  2010-05-08       Impact factor: 3.641

4.  One pot synthesis and SAR of some novel 3-substituted 5,6-diphenyl-1,2,4-triazines as antifungal agents.

Authors:  Jaiprakash N Sangshetti; Devanand B Shinde
Journal:  Bioorg Med Chem Lett       Date:  2009-11-15       Impact factor: 2.823

  4 in total

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