Literature DB >> 22719550

6-Chloro-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Nasser R El-Brollosy, Mohamed I Attia, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(19)H(17)ClN(2)O(3), the conformation about the ethyl-ene bond [1.333 (2) Å] is E. The ten atoms comprising the quinazoline ring are essentially planar (r.m.s. deviation = 0.032 Å) and their mean plane forms a dihedral angle of 13.89 (7)° with the terminal phenyl ring; the mol-ecule has an open conformation as these substituents are directed away from each other. In the crystal, centrosymmetrically related mol-ecules are connected via N-H⋯O hydrogen bonds between the amide groups, leading to eight-membered {⋯HNCO}(2) synthons. These are consolidated into a three-dimensional architecture by C-H⋯O, C-H⋯π and π-π inter-actions [ring centroid(N(2)C(4))⋯centroid(C(6)) distance = 3.5820 (11) Å].

Entities:  

Year:  2012        PMID: 22719550      PMCID: PMC3379352          DOI: 10.1107/S1600536812020405

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to non-nucleoside reverse transcriptase inhib­itors, see: Hopkins et al. (1996 ▶, 1999 ▶); El-Brollosy et al. (2008 ▶, 2009 ▶). For a related structure, see: El-Brollosy et al. (2012 ▶). For the synthesis, see: El-Brollosy (2007 ▶).

Experimental

Crystal data

C19H17ClN2O3 M = 356.80 Triclinic, a = 7.6179 (3) Å b = 9.8168 (4) Å c = 11.7009 (6) Å α = 73.937 (4)° β = 83.651 (3)° γ = 80.942 (3)° V = 828.31 (6) Å3 Z = 2 Mo Kα radiation μ = 0.25 mm−1 T = 100 K 0.35 × 0.30 × 0.15 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.904, T max = 1.000 13263 measured reflections 3817 independent reflections 3107 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.114 S = 1.04 3817 reflections 231 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020405/hg5225sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020405/hg5225Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020405/hg5225Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17ClN2O3Z = 2
Mr = 356.80F(000) = 372
Triclinic, P1Dx = 1.431 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6179 (3) ÅCell parameters from 5016 reflections
b = 9.8168 (4) Åθ = 2.4–27.5°
c = 11.7009 (6) ŵ = 0.25 mm1
α = 73.937 (4)°T = 100 K
β = 83.651 (3)°Prism, colourless
γ = 80.942 (3)°0.35 × 0.30 × 0.15 mm
V = 828.31 (6) Å3
Agilent SuperNova Dual diffractometer with an Atlas detector3817 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3107 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.040
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.4°
ω scanh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −12→12
Tmin = 0.904, Tmax = 1.000l = −15→15
13263 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0527P)2 + 0.2968P] where P = (Fo2 + 2Fc2)/3
3817 reflections(Δ/σ)max = 0.001
231 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.38928 (5)0.76323 (5)−0.23450 (4)0.02434 (13)
N10.49947 (18)0.56212 (15)0.32224 (13)0.0176 (3)
H1n0.570 (3)0.554 (2)0.377 (2)0.028 (5)*
N20.21281 (17)0.53780 (14)0.28304 (12)0.0155 (3)
O10.69610 (15)0.66966 (14)0.17823 (11)0.0257 (3)
O20.30631 (15)0.46261 (13)0.47243 (10)0.0204 (3)
O3−0.00414 (15)0.38341 (12)0.28957 (10)0.0204 (3)
C10.5525 (2)0.62527 (18)0.20503 (15)0.0184 (3)
C20.3372 (2)0.51704 (17)0.36544 (15)0.0161 (3)
C30.2530 (2)0.59293 (16)0.16058 (14)0.0149 (3)
C40.1268 (2)0.60638 (18)0.07786 (15)0.0185 (3)
H40.01160.57980.10470.022*
C50.1707 (2)0.65856 (18)−0.04289 (15)0.0190 (3)
H50.08580.6671−0.09900.023*
C60.3390 (2)0.69845 (17)−0.08203 (15)0.0182 (3)
C70.4642 (2)0.68767 (17)−0.00267 (15)0.0180 (3)
H70.57840.7160−0.03030.022*
C80.4207 (2)0.63424 (17)0.11936 (15)0.0159 (3)
C90.0336 (2)0.50004 (17)0.32680 (15)0.0173 (3)
H9A0.02350.47580.41500.021*
H9B−0.05590.58390.29740.021*
C100.1126 (2)0.25517 (18)0.33274 (16)0.0228 (4)
H10A0.23690.27630.31300.027*
H10B0.09500.18520.28960.027*
C110.0895 (2)0.18595 (17)0.46551 (16)0.0193 (4)
C120.2574 (2)0.0954 (2)0.51400 (17)0.0265 (4)
H12A0.22660.01000.57490.040*
H12B0.32170.15060.54950.040*
H12C0.33320.06660.44910.040*
C13−0.0679 (2)0.20299 (18)0.52568 (16)0.0211 (4)
H13−0.15940.26630.48180.025*
C14−0.1176 (2)0.13561 (18)0.65213 (16)0.0219 (4)
C150.0034 (3)0.0873 (2)0.74056 (17)0.0277 (4)
H150.12360.10510.72170.033*
C16−0.0489 (3)0.0139 (2)0.85514 (18)0.0345 (5)
H160.0369−0.02100.91310.041*
C17−0.2235 (3)−0.0093 (2)0.88651 (19)0.0370 (5)
H17−0.2577−0.06120.96510.044*
C18−0.3487 (3)0.0438 (2)0.8023 (2)0.0346 (5)
H18−0.47020.03110.82350.042*
C19−0.2959 (2)0.11572 (19)0.68646 (18)0.0267 (4)
H19−0.38270.15220.62940.032*
U11U22U33U12U13U23
Cl10.0269 (2)0.0308 (2)0.0125 (2)−0.00363 (18)−0.00140 (16)−0.00102 (17)
N10.0145 (7)0.0237 (7)0.0145 (7)−0.0037 (6)−0.0058 (6)−0.0025 (6)
N20.0141 (6)0.0203 (7)0.0117 (7)−0.0025 (5)−0.0029 (5)−0.0025 (5)
O10.0153 (6)0.0385 (7)0.0207 (7)−0.0082 (5)−0.0041 (5)0.0004 (6)
O20.0193 (6)0.0284 (6)0.0130 (6)−0.0051 (5)−0.0049 (5)−0.0020 (5)
O30.0241 (6)0.0221 (6)0.0160 (6)−0.0070 (5)−0.0061 (5)−0.0025 (5)
C10.0161 (8)0.0212 (8)0.0170 (9)−0.0019 (6)−0.0026 (6)−0.0031 (7)
C20.0170 (7)0.0171 (8)0.0152 (8)−0.0015 (6)−0.0045 (6)−0.0052 (6)
C30.0166 (7)0.0147 (7)0.0130 (8)−0.0012 (6)−0.0025 (6)−0.0029 (6)
C40.0172 (8)0.0222 (8)0.0164 (9)−0.0041 (6)−0.0036 (6)−0.0038 (7)
C50.0197 (8)0.0215 (8)0.0159 (9)−0.0025 (7)−0.0063 (6)−0.0030 (7)
C60.0229 (8)0.0189 (8)0.0113 (8)−0.0004 (7)−0.0021 (6)−0.0021 (6)
C70.0154 (7)0.0201 (8)0.0170 (9)−0.0018 (6)−0.0009 (6)−0.0028 (7)
C80.0155 (7)0.0169 (8)0.0148 (8)−0.0001 (6)−0.0028 (6)−0.0036 (6)
C90.0159 (7)0.0218 (8)0.0141 (8)−0.0038 (6)−0.0020 (6)−0.0034 (7)
C100.0268 (9)0.0221 (9)0.0203 (9)−0.0039 (7)−0.0012 (7)−0.0071 (7)
C110.0228 (8)0.0168 (8)0.0197 (9)−0.0045 (6)−0.0059 (7)−0.0044 (7)
C120.0263 (9)0.0284 (9)0.0244 (10)0.0015 (7)−0.0051 (7)−0.0081 (8)
C130.0228 (8)0.0186 (8)0.0209 (9)−0.0024 (7)−0.0069 (7)−0.0019 (7)
C140.0279 (9)0.0163 (8)0.0217 (9)−0.0037 (7)0.0006 (7)−0.0058 (7)
C150.0339 (10)0.0279 (10)0.0212 (10)−0.0006 (8)−0.0028 (8)−0.0077 (8)
C160.0504 (12)0.0326 (11)0.0189 (10)0.0022 (9)−0.0042 (9)−0.0078 (8)
C170.0606 (14)0.0278 (10)0.0218 (11)−0.0097 (10)0.0097 (10)−0.0082 (8)
C180.0408 (11)0.0285 (10)0.0380 (12)−0.0131 (9)0.0149 (9)−0.0167 (9)
C190.0298 (9)0.0224 (9)0.0297 (11)−0.0045 (7)0.0009 (8)−0.0105 (8)
Cl1—C61.7412 (17)C9—H9B0.9900
N1—C21.375 (2)C10—C111.516 (2)
N1—C11.383 (2)C10—H10A0.9900
N1—H1n0.85 (2)C10—H10B0.9900
N2—C21.379 (2)C11—C131.333 (2)
N2—C31.402 (2)C11—C121.507 (2)
N2—C91.471 (2)C12—H12A0.9800
O1—C11.2181 (19)C12—H12B0.9800
O2—C21.2298 (19)C12—H12C0.9800
O3—C91.4109 (19)C13—C141.478 (2)
O3—C101.423 (2)C13—H130.9500
C1—C81.472 (2)C14—C151.395 (3)
C3—C81.395 (2)C14—C191.401 (2)
C3—C41.405 (2)C15—C161.383 (3)
C4—C51.385 (2)C15—H150.9500
C4—H40.9500C16—C171.378 (3)
C5—C61.391 (2)C16—H160.9500
C5—H50.9500C17—C181.386 (3)
C6—C71.376 (2)C17—H170.9500
C7—C81.400 (2)C18—C191.391 (3)
C7—H70.9500C18—H180.9500
C9—H9A0.9900C19—H190.9500
C2—N1—C1127.24 (14)O3—C10—C11115.55 (14)
C2—N1—H1n113.6 (14)O3—C10—H10A108.4
C1—N1—H1n119.0 (14)C11—C10—H10A108.4
C2—N2—C3121.94 (13)O3—C10—H10B108.4
C2—N2—C9118.11 (13)C11—C10—H10B108.4
C3—N2—C9119.94 (13)H10A—C10—H10B107.5
C9—O3—C10113.33 (12)C13—C11—C12126.82 (17)
O1—C1—N1121.37 (15)C13—C11—C10120.77 (15)
O1—C1—C8124.46 (16)C12—C11—C10112.35 (15)
N1—C1—C8114.16 (14)C11—C12—H12A109.5
O2—C2—N1120.90 (14)C11—C12—H12B109.5
O2—C2—N2122.60 (14)H12A—C12—H12B109.5
N1—C2—N2116.49 (14)C11—C12—H12C109.5
C8—C3—N2120.01 (14)H12A—C12—H12C109.5
C8—C3—C4119.13 (15)H12B—C12—H12C109.5
N2—C3—C4120.86 (14)C11—C13—C14128.07 (16)
C5—C4—C3119.85 (15)C11—C13—H13116.0
C5—C4—H4120.1C14—C13—H13116.0
C3—C4—H4120.1C15—C14—C19117.21 (17)
C4—C5—C6120.04 (15)C15—C14—C13123.94 (16)
C4—C5—H5120.0C19—C14—C13118.85 (16)
C6—C5—H5120.0C16—C15—C14121.07 (19)
C7—C6—C5121.20 (16)C16—C15—H15119.5
C7—C6—Cl1120.11 (13)C14—C15—H15119.5
C5—C6—Cl1118.70 (13)C17—C16—C15121.0 (2)
C6—C7—C8118.90 (15)C17—C16—H16119.5
C6—C7—H7120.5C15—C16—H16119.5
C8—C7—H7120.5C16—C17—C18119.32 (19)
C3—C8—C7120.88 (14)C16—C17—H17120.3
C3—C8—C1119.84 (15)C18—C17—H17120.3
C7—C8—C1119.26 (14)C17—C18—C19119.79 (19)
O3—C9—N2112.34 (13)C17—C18—H18120.1
O3—C9—H9A109.1C19—C18—H18120.1
N2—C9—H9A109.1C18—C19—C14121.51 (19)
O3—C9—H9B109.1C18—C19—H19119.2
N2—C9—H9B109.1C14—C19—H19119.2
H9A—C9—H9B107.9
C2—N1—C1—O1175.02 (16)C6—C7—C8—C1−178.68 (15)
C2—N1—C1—C8−4.4 (2)O1—C1—C8—C3−173.69 (16)
C1—N1—C2—O2−179.73 (15)N1—C1—C8—C35.7 (2)
C1—N1—C2—N2−0.5 (2)O1—C1—C8—C74.7 (3)
C3—N2—C2—O2−176.52 (14)N1—C1—C8—C7−175.91 (14)
C9—N2—C2—O23.4 (2)C10—O3—C9—N261.77 (17)
C3—N2—C2—N14.2 (2)C2—N2—C9—O3−113.36 (15)
C9—N2—C2—N1−175.90 (13)C3—N2—C9—O366.52 (18)
C2—N2—C3—C8−2.7 (2)C9—O3—C10—C1170.12 (18)
C9—N2—C3—C8177.40 (14)O3—C10—C11—C1328.0 (2)
C2—N2—C3—C4176.78 (15)O3—C10—C11—C12−154.74 (14)
C9—N2—C3—C4−3.1 (2)C12—C11—C13—C14−1.7 (3)
C8—C3—C4—C50.8 (2)C10—C11—C13—C14175.12 (16)
N2—C3—C4—C5−178.76 (15)C11—C13—C14—C1525.9 (3)
C3—C4—C5—C6−0.4 (3)C11—C13—C14—C19−152.81 (18)
C4—C5—C6—C7−0.2 (3)C19—C14—C15—C164.5 (3)
C4—C5—C6—Cl1179.88 (13)C13—C14—C15—C16−174.27 (17)
C5—C6—C7—C80.6 (3)C14—C15—C16—C17−2.3 (3)
Cl1—C6—C7—C8−179.53 (12)C15—C16—C17—C18−1.0 (3)
N2—C3—C8—C7179.11 (14)C16—C17—C18—C192.0 (3)
C4—C3—C8—C7−0.4 (2)C17—C18—C19—C140.3 (3)
N2—C3—C8—C1−2.5 (2)C15—C14—C19—C18−3.5 (3)
C4—C3—C8—C1178.01 (15)C13—C14—C19—C18175.33 (16)
C6—C7—C8—C3−0.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O2i0.85 (2)2.05 (2)2.8932 (18)168.9 (19)
C4—H4···O1ii0.952.573.382 (2)144
C5—H5···O3iii0.952.573.427 (2)150
C9—H9B···O1ii0.992.383.232 (2)144
C10—H10A···Cg1iv0.992.693.612 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C14–C19 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O2i0.85 (2)2.05 (2)2.8932 (18)168.9 (19)
C4—H4⋯O1ii0.952.573.382 (2)144
C5—H5⋯O3iii0.952.573.427 (2)150
C9—H9B⋯O1ii0.992.383.232 (2)144
C10—H10ACg1iv0.992.693.612 (2)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors.

Authors:  A L Hopkins; J Ren; R M Esnouf; B E Willcox; E Y Jones; C Ross; T Miyasaka; R T Walker; H Tanaka; D K Stammers; D I Stuart
Journal:  J Med Chem       Date:  1996-04-12       Impact factor: 7.446

3.  Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants.

Authors:  A L Hopkins; J Ren; H Tanaka; M Baba; M Okamato; D I Stuart; D K Stammers
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4.  Synthesis and antiviral evaluation of 6-(trifluoromethylbenzyl) and 6-(fluorobenzyl) analogues of HIV drugs emivirine and GCA-186.

Authors:  Nasser R El-Brollosy; Esben R Sørensen; Erik B Pedersen; Giuseppina Sanna; Paolo La Colla; Roberta Loddo
Journal:  Arch Pharm (Weinheim)       Date:  2008-01       Impact factor: 3.751

5.  6-Methyl-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Authors:  Nasser R El-Brollosy; Mohamed I Attia; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  5 in total
  1 in total

1.  6-Methyl-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Authors:  Nasser R El-Brollosy; Mohamed I Attia; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  1 in total

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