Literature DB >> 22719549

6-Methyl-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Nasser R El-Brollosy, Mohamed I Attia, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(20)H(20)N(2)O(3), the ten atoms comprising the quinazoline ring are essentially planar (r.m.s. deviation = 0.024 Å), and this plane is almost orthogonal to the terminal phenyl ring [dihedral angle = 82.87 (7)°]. The conformation about the ethyl-ene bond [1.335 (2) Å] is E and there is a significant twist between this residue and the adjacent phenyl ring [C-C-C- torsion angle = -48.4 (3)°]. The crystal structure features centrosymmetric dimeric units linked by pairs of N-H⋯O hydrogen bonds between the amide groups which lead to eight-membered {⋯HNCO}(2) synthons. These are consolidated into a three-dimensional architecture by C-H⋯O, C-H⋯π and π-π inter-actions [centroid-centroid distances = 3.5087 (8) and 3.5645 (9) Å].

Entities:  

Year:  2012        PMID: 22719549      PMCID: PMC3379351          DOI: 10.1107/S1600536812020429

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to non-nucleoside reverse transcriptase inhib­itors, see: Hopkins et al. (1996 ▶, 1999 ▶); El-Brollosy et al. (2008 ▶, 2009 ▶). For a related structure, see: El-Brollosy et al. (2012 ▶). For the synthesis, see: El-Brollosy (2007 ▶).

Experimental

Crystal data

C20H20N2O3 M = 336.38 Monoclinic, a = 16.2352 (8) Å b = 13.6934 (6) Å c = 7.8900 (4) Å β = 102.606 (5)° V = 1711.78 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.40 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.522, T max = 1.000 13993 measured reflections 3965 independent reflections 3067 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.129 S = 1.02 3965 reflections 232 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020429/hg5224sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020429/hg5224Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020429/hg5224Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H20N2O3F(000) = 712
Mr = 336.38Dx = 1.305 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4710 reflections
a = 16.2352 (8) Åθ = 2.6–27.5°
b = 13.6934 (6) ŵ = 0.09 mm1
c = 7.8900 (4) ÅT = 100 K
β = 102.606 (5)°Prism, colourless
V = 1711.78 (14) Å30.40 × 0.20 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector3965 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3067 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.048
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.6°
ω scanh = −21→20
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −17→17
Tmin = 0.522, Tmax = 1.000l = −10→8
13993 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0571P)2 + 0.6389P] where P = (Fo2 + 2Fc2)/3
3965 reflections(Δ/σ)max < 0.001
232 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.51870 (7)0.31276 (7)0.15509 (14)0.0230 (3)
O20.55774 (7)0.59676 (8)0.45728 (13)0.0209 (2)
O30.72545 (6)0.70049 (7)0.27942 (13)0.0190 (2)
N10.53851 (8)0.45651 (9)0.30019 (16)0.0180 (3)
H1n0.5078 (12)0.4335 (14)0.379 (2)0.030 (5)*
N20.60917 (7)0.58944 (9)0.21014 (16)0.0162 (3)
C10.54810 (9)0.39555 (10)0.16689 (19)0.0174 (3)
C20.56805 (9)0.55065 (10)0.32956 (18)0.0169 (3)
C30.62603 (9)0.53339 (11)0.07198 (18)0.0163 (3)
C40.67248 (9)0.57169 (11)−0.04270 (19)0.0186 (3)
H40.69320.6367−0.02840.022*
C50.68806 (9)0.51480 (11)−0.17644 (19)0.0204 (3)
H50.71980.5418−0.25300.024*
C60.65885 (9)0.41867 (11)−0.20352 (19)0.0202 (3)
C70.61195 (9)0.38169 (11)−0.09098 (19)0.0189 (3)
H70.59010.3172−0.10780.023*
C80.59609 (9)0.43757 (11)0.04694 (18)0.0169 (3)
C90.67858 (11)0.35752 (12)−0.3488 (2)0.0270 (4)
H9A0.62990.3162−0.39770.041*
H9B0.72770.3162−0.30340.041*
H9C0.69090.4004−0.43960.041*
C100.63668 (9)0.69150 (10)0.23222 (19)0.0176 (3)
H10A0.61550.72720.12220.021*
H10B0.61170.72210.32300.021*
C110.76134 (9)0.65578 (11)0.44431 (19)0.0201 (3)
H11A0.75360.58410.43540.024*
H11B0.73210.68020.53360.024*
C120.85380 (10)0.67948 (11)0.49682 (19)0.0213 (3)
C130.87568 (10)0.78634 (12)0.5069 (2)0.0258 (4)
H13A0.93510.79450.56500.039*
H13B0.83990.82060.57290.039*
H13C0.86630.81350.38930.039*
C140.90837 (10)0.60631 (12)0.5433 (2)0.0248 (4)
H140.88550.54220.52980.030*
C151.00037 (10)0.61367 (12)0.6133 (2)0.0289 (4)
C161.03668 (12)0.55823 (14)0.7593 (3)0.0376 (4)
H161.00200.51680.81050.045*
C171.12270 (13)0.56292 (15)0.8303 (3)0.0468 (5)
H171.14640.52570.93070.056*
C181.17373 (12)0.62174 (16)0.7550 (3)0.0481 (6)
H181.23260.62490.80380.058*
C191.13958 (12)0.67605 (15)0.6089 (3)0.0430 (5)
H191.17490.71630.55700.052*
C201.05311 (11)0.67162 (14)0.5379 (3)0.0342 (4)
H201.02990.70860.43680.041*
U11U22U33U12U13U23
O10.0252 (6)0.0164 (5)0.0286 (6)−0.0030 (4)0.0084 (5)0.0003 (4)
O20.0243 (6)0.0206 (5)0.0193 (6)−0.0032 (4)0.0079 (4)−0.0011 (4)
O30.0172 (5)0.0208 (5)0.0190 (5)−0.0022 (4)0.0041 (4)0.0018 (4)
N10.0191 (6)0.0181 (6)0.0180 (6)−0.0017 (5)0.0064 (5)0.0020 (5)
N20.0163 (6)0.0156 (6)0.0169 (6)−0.0016 (5)0.0039 (5)−0.0002 (5)
C10.0152 (7)0.0171 (7)0.0190 (7)0.0009 (6)0.0021 (5)0.0021 (6)
C20.0142 (7)0.0183 (7)0.0176 (7)0.0013 (6)0.0023 (5)0.0012 (6)
C30.0138 (7)0.0174 (7)0.0165 (7)0.0019 (6)0.0005 (5)0.0006 (5)
C40.0176 (7)0.0176 (7)0.0201 (7)−0.0014 (6)0.0029 (6)0.0014 (6)
C50.0178 (7)0.0246 (8)0.0192 (7)0.0016 (6)0.0050 (6)0.0035 (6)
C60.0191 (7)0.0224 (8)0.0185 (7)0.0035 (6)0.0031 (6)−0.0002 (6)
C70.0179 (7)0.0175 (7)0.0195 (7)0.0010 (6)0.0003 (6)0.0008 (6)
C80.0136 (7)0.0171 (7)0.0191 (7)0.0017 (6)0.0018 (5)0.0027 (6)
C90.0333 (9)0.0248 (8)0.0247 (8)0.0034 (7)0.0103 (7)−0.0021 (7)
C100.0179 (7)0.0151 (7)0.0198 (7)−0.0005 (6)0.0040 (5)0.0000 (5)
C110.0205 (8)0.0209 (8)0.0191 (7)0.0008 (6)0.0050 (6)0.0018 (6)
C120.0212 (8)0.0249 (8)0.0180 (7)−0.0007 (6)0.0046 (6)−0.0024 (6)
C130.0207 (8)0.0237 (8)0.0321 (9)−0.0002 (7)0.0039 (6)−0.0027 (7)
C140.0236 (8)0.0240 (8)0.0258 (8)−0.0001 (7)0.0031 (6)−0.0028 (6)
C150.0240 (9)0.0244 (8)0.0356 (10)0.0048 (7)0.0008 (7)−0.0077 (7)
C160.0331 (10)0.0315 (10)0.0426 (11)0.0059 (8)−0.0043 (8)−0.0014 (8)
C170.0359 (11)0.0375 (11)0.0555 (13)0.0104 (9)−0.0148 (9)−0.0033 (9)
C180.0217 (9)0.0396 (11)0.0736 (15)0.0072 (9)−0.0104 (9)−0.0158 (11)
C190.0239 (9)0.0392 (11)0.0642 (14)−0.0002 (8)0.0057 (9)−0.0135 (10)
C200.0250 (9)0.0338 (10)0.0419 (11)0.0038 (8)0.0034 (8)−0.0059 (8)
O1—C11.2257 (18)C10—H10A0.9900
O2—C21.2311 (17)C10—H10B0.9900
O3—C101.4130 (17)C11—C121.503 (2)
O3—C111.4409 (18)C11—H11A0.9900
N1—C11.3780 (19)C11—H11B0.9900
N1—C21.3773 (19)C12—C141.335 (2)
N1—H1n0.93 (2)C12—C131.504 (2)
N2—C21.3749 (18)C13—H13A0.9800
N2—C31.4081 (18)C13—H13B0.9800
N2—C101.4659 (18)C13—H13C0.9800
C1—C81.468 (2)C14—C151.479 (2)
C3—C81.398 (2)C14—H140.9500
C3—C41.400 (2)C15—C201.393 (3)
C4—C51.379 (2)C15—C161.397 (3)
C4—H40.9500C16—C171.388 (3)
C5—C61.400 (2)C16—H160.9500
C5—H50.9500C17—C181.379 (3)
C6—C71.386 (2)C17—H170.9500
C6—C91.509 (2)C18—C191.382 (3)
C7—C81.399 (2)C18—H180.9500
C7—H70.9500C19—C201.395 (3)
C9—H9A0.9800C19—H190.9500
C9—H9B0.9800C20—H200.9500
C9—H9C0.9800
C10—O3—C11112.91 (11)O3—C10—H10B109.1
C1—N1—C2127.03 (13)N2—C10—H10B109.1
C1—N1—H1n118.0 (12)H10A—C10—H10B107.9
C2—N1—H1n114.9 (12)O3—C11—C12109.88 (12)
C2—N2—C3121.70 (12)O3—C11—H11A109.7
C2—N2—C10117.89 (12)C12—C11—H11A109.7
C3—N2—C10120.40 (11)O3—C11—H11B109.7
O1—C1—N1120.75 (13)C12—C11—H11B109.7
O1—C1—C8124.49 (13)H11A—C11—H11B108.2
N1—C1—C8114.76 (12)C14—C12—C13125.52 (14)
O2—C2—N2122.40 (13)C14—C12—C11118.48 (14)
O2—C2—N1120.88 (13)C13—C12—C11115.78 (13)
N2—C2—N1116.72 (12)C12—C13—H13A109.5
C8—C3—C4118.68 (13)C12—C13—H13B109.5
C8—C3—N2120.03 (13)H13A—C13—H13B109.5
C4—C3—N2121.29 (13)C12—C13—H13C109.5
C5—C4—C3119.85 (13)H13A—C13—H13C109.5
C5—C4—H4120.1H13B—C13—H13C109.5
C3—C4—H4120.1C12—C14—C15127.40 (15)
C4—C5—C6122.38 (14)C12—C14—H14116.3
C4—C5—H5118.8C15—C14—H14116.3
C6—C5—H5118.8C20—C15—C16118.26 (16)
C7—C6—C5117.47 (14)C20—C15—C14122.97 (16)
C7—C6—C9121.41 (14)C16—C15—C14118.75 (17)
C5—C6—C9121.12 (14)C17—C16—C15120.9 (2)
C6—C7—C8121.24 (14)C17—C16—H16119.5
C6—C7—H7119.4C15—C16—H16119.5
C8—C7—H7119.4C18—C17—C16119.9 (2)
C3—C8—C7120.38 (13)C18—C17—H17120.0
C3—C8—C1119.59 (13)C16—C17—H17120.0
C7—C8—C1120.04 (13)C17—C18—C19120.27 (18)
C6—C9—H9A109.5C17—C18—H18119.9
C6—C9—H9B109.5C19—C18—H18119.9
H9A—C9—H9B109.5C18—C19—C20119.8 (2)
C6—C9—H9C109.5C18—C19—H19120.1
H9A—C9—H9C109.5C20—C19—H19120.1
H9B—C9—H9C109.5C15—C20—C19120.78 (18)
O3—C10—N2112.40 (11)C15—C20—H20119.6
O3—C10—H10A109.1C19—C20—H20119.6
N2—C10—H10A109.1
C2—N1—C1—O1179.94 (14)C6—C7—C8—C1−178.37 (13)
C2—N1—C1—C80.7 (2)O1—C1—C8—C3179.38 (14)
C3—N2—C2—O2175.15 (13)N1—C1—C8—C3−1.44 (19)
C10—N2—C2—O2−3.8 (2)O1—C1—C8—C7−0.9 (2)
C3—N2—C2—N1−4.7 (2)N1—C1—C8—C7178.28 (13)
C10—N2—C2—N1176.31 (12)C11—O3—C10—N2−62.48 (15)
C1—N1—C2—O2−177.56 (14)C2—N2—C10—O3111.14 (14)
C1—N1—C2—N22.3 (2)C3—N2—C10—O3−67.84 (16)
C2—N2—C3—C84.1 (2)C10—O3—C11—C12−172.58 (12)
C10—N2—C3—C8−176.95 (12)O3—C11—C12—C14−128.83 (15)
C2—N2—C3—C4−176.01 (13)O3—C11—C12—C1356.34 (17)
C10—N2—C3—C42.9 (2)C13—C12—C14—C150.0 (3)
C8—C3—C4—C5−0.3 (2)C11—C12—C14—C15−174.30 (15)
N2—C3—C4—C5179.85 (13)C12—C14—C15—C20−48.4 (3)
C3—C4—C5—C60.1 (2)C12—C14—C15—C16133.26 (19)
C4—C5—C6—C70.7 (2)C20—C15—C16—C171.9 (3)
C4—C5—C6—C9−178.65 (14)C14—C15—C16—C17−179.73 (17)
C5—C6—C7—C8−1.5 (2)C15—C16—C17—C18−1.0 (3)
C9—C6—C7—C8177.92 (14)C16—C17—C18—C190.0 (3)
C4—C3—C8—C7−0.4 (2)C17—C18—C19—C200.3 (3)
N2—C3—C8—C7179.44 (13)C16—C15—C20—C19−1.6 (3)
C4—C3—C8—C1179.28 (13)C14—C15—C20—C19−179.96 (16)
N2—C3—C8—C1−0.8 (2)C18—C19—C20—C150.6 (3)
C6—C7—C8—C31.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1n···O2i0.93 (2)1.89 (2)2.8180 (16)172.9 (17)
C10—H10B···O1ii0.992.493.3001 (18)139
C11—H11B···O3iii0.992.563.4462 (18)150
C14—H14···Cg3iv0.952.853.5574 (18)132
C18—H18···Cg2iv0.952.913.680 (2)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg3 are the centroids of the C8–C8 and C15–C20 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O2i0.93 (2)1.89 (2)2.8180 (16)172.9 (17)
C10—H10B⋯O1ii0.992.493.3001 (18)139
C11—H11B⋯O3iii0.992.563.4462 (18)150
C14—H14⋯Cg3iv0.952.853.5574 (18)132
C18—H18⋯Cg2iv0.952.913.680 (2)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Complexes of HIV-1 reverse transcriptase with inhibitors of the HEPT series reveal conformational changes relevant to the design of potent non-nucleoside inhibitors.

Authors:  A L Hopkins; J Ren; R M Esnouf; B E Willcox; E Y Jones; C Ross; T Miyasaka; R T Walker; H Tanaka; D K Stammers; D I Stuart
Journal:  J Med Chem       Date:  1996-04-12       Impact factor: 7.446

3.  Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants.

Authors:  A L Hopkins; J Ren; H Tanaka; M Baba; M Okamato; D I Stuart; D K Stammers
Journal:  J Med Chem       Date:  1999-11-04       Impact factor: 7.446

4.  Synthesis and antiviral evaluation of 6-(trifluoromethylbenzyl) and 6-(fluorobenzyl) analogues of HIV drugs emivirine and GCA-186.

Authors:  Nasser R El-Brollosy; Esben R Sørensen; Erik B Pedersen; Giuseppina Sanna; Paolo La Colla; Roberta Loddo
Journal:  Arch Pharm (Weinheim)       Date:  2008-01       Impact factor: 3.751

5.  6-Chloro-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Authors:  Nasser R El-Brollosy; Mohamed I Attia; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  5 in total
  1 in total

1.  6-Chloro-1-({[(2E)-2-methyl-3-phenyl-prop-2-en-1-yl]-oxy}meth-yl)-1,2,3,4-tetra-hydro-quinazoline-2,4-dione.

Authors:  Nasser R El-Brollosy; Mohamed I Attia; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19
  1 in total

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