Literature DB >> 22719537

N'(2),N'(5)-Bis[(E)-2-hy-droxy-benzyl-idene]-3,4-dimethyl-thio-phene-2,5-dicarbohydrazide.

Shao-Lin Zhang1, Ling Zhang, Qin-Mei Wen, Rong-Xia Geng, Cheng-He Zhou.   

Abstract

In the title mol-ecule, C(22)H(20)N(4)O(4)S, both C=N bonds are in an E conformation. The benzene rings form dihedral angles of 12.10 (13) and 25.17 (12)° with the thio-phene ring. The dihedral angle between the two benzene rings is 17.59 (14)°. There are two intra-molecular O-H⋯N hydrogen bonds. In the crystal, N-H⋯O hydrogen bonds connect mol-ecules into chains along [010].

Entities:  

Year:  2012        PMID: 22719537      PMCID: PMC3379339          DOI: 10.1107/S1600536812020260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the medicinal properties of thio­phene derivatives, see: Bondock et al. (2010 ▶); Geng & Zhou (2008 ▶). For a related structure, see: Tang et al. (2010 ▶).

Experimental

Crystal data

C22H20N4O4S M = 436.48 Triclinic, a = 8.392 (8) Å b = 9.511 (9) Å c = 12.937 (8) Å α = 99.853 (17)° β = 90.804 (18)° γ = 92.374 (18)° V = 1016.2 (15) Å3 Z = 2 Mo Kα radiation μ = 0.20 mm−1 T = 296 K 0.19 × 0.18 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.963, T max = 0.969 5573 measured reflections 3925 independent reflections 2660 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.128 S = 1.02 3925 reflections 283 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020260/lh5463sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020260/lh5463Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020260/lh5463Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H20N4O4SZ = 2
Mr = 436.48F(000) = 456
Triclinic, P1Dx = 1.426 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.392 (8) ÅCell parameters from 1480 reflections
b = 9.511 (9) Åθ = 2.9–24.4°
c = 12.937 (8) ŵ = 0.20 mm1
α = 99.853 (17)°T = 296 K
β = 90.804 (18)°Block, yellow
γ = 92.374 (18)°0.19 × 0.18 × 0.16 mm
V = 1016.2 (15) Å3
Bruker APEXII CCD diffractometer3925 independent reflections
Radiation source: fine-focus sealed tube2660 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→10
Tmin = 0.963, Tmax = 0.969k = −11→10
5573 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.128w = 1/[σ2(Fo2) + (0.0604P)2 + 0.0881P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3925 reflectionsΔρmax = 0.23 e Å3
283 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0062 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.9005 (2)0.2862 (2)0.73465 (15)0.0457 (5)
N20.8176 (2)0.32288 (19)0.65213 (15)0.0463 (6)
H20.81120.41090.64550.056*
N30.0145 (2)0.15155 (19)0.30284 (15)0.0423 (5)
N40.1633 (2)0.16130 (19)0.34807 (16)0.0448 (5)
H40.19900.09260.37590.054*
C11.0429 (3)0.2314 (3)0.92331 (19)0.0473 (6)
C21.1287 (4)0.2087 (3)1.0091 (2)0.0631 (8)
H2A1.11100.12511.03630.076*
C31.2397 (4)0.3085 (4)1.0542 (2)0.0702 (9)
H3A1.29920.29191.11180.084*
C41.2661 (4)0.4336 (4)1.0168 (2)0.0658 (8)
H4A1.34240.50141.04880.079*
C51.1795 (3)0.4575 (3)0.9320 (2)0.0524 (7)
H5A1.19580.54290.90710.063*
C61.0681 (3)0.3567 (3)0.88285 (18)0.0424 (6)
C70.9818 (3)0.3853 (3)0.79290 (18)0.0432 (6)
H7A0.98540.47720.77710.052*
C80.7473 (3)0.2195 (2)0.5826 (2)0.0438 (6)
C90.6441 (3)0.2671 (2)0.50316 (18)0.0392 (6)
C100.6698 (3)0.3655 (2)0.44024 (17)0.0365 (5)
C110.8216 (3)0.4475 (3)0.4339 (2)0.0482 (6)
H11A0.89740.42380.48370.072*
H11B0.80350.54790.44930.072*
H11C0.86260.42420.36440.072*
C120.5355 (3)0.3773 (2)0.37593 (16)0.0348 (5)
C130.5400 (3)0.4737 (3)0.29632 (19)0.0482 (6)
H13A0.43820.46810.26070.072*
H13B0.62100.44480.24640.072*
H13C0.56360.57020.33060.072*
C140.4126 (3)0.2878 (2)0.39320 (17)0.0356 (5)
C150.2514 (3)0.2808 (2)0.34768 (17)0.0364 (5)
C16−0.0755 (3)0.0451 (2)0.31184 (19)0.0454 (6)
H16A−0.0433−0.02000.35320.055*
C17−0.2275 (3)0.0243 (3)0.25834 (19)0.0452 (6)
C18−0.2791 (3)0.1158 (3)0.1937 (2)0.0490 (7)
C19−0.4226 (4)0.0886 (4)0.1412 (2)0.0686 (9)
H19A−0.45690.15000.09750.082*
C20−0.5150 (4)−0.0277 (4)0.1529 (3)0.0798 (11)
H20A−0.6133−0.04460.11790.096*
C21−0.4657 (4)−0.1201 (4)0.2151 (3)0.0795 (10)
H21A−0.5291−0.20050.22180.095*
C22−0.3236 (4)−0.0936 (3)0.2669 (2)0.0639 (8)
H22A−0.2900−0.15680.30940.077*
O10.9338 (3)0.13019 (19)0.88189 (15)0.0640 (6)
H10.89080.15360.83050.096*
O20.7611 (2)0.09444 (16)0.58491 (16)0.0683 (6)
O30.1986 (2)0.38046 (15)0.31228 (12)0.0443 (4)
O4−0.1926 (2)0.2321 (2)0.17967 (17)0.0681 (6)
H4B−0.10730.23550.21190.102*
S10.46125 (8)0.18434 (6)0.48365 (5)0.0450 (2)
U11U22U33U12U13U23
N10.0422 (13)0.0467 (11)0.0497 (12)0.0023 (10)−0.0194 (10)0.0140 (9)
N20.0483 (13)0.0348 (10)0.0563 (13)−0.0007 (9)−0.0264 (11)0.0116 (9)
N30.0329 (11)0.0371 (10)0.0555 (13)0.0001 (9)−0.0143 (10)0.0054 (9)
N40.0351 (12)0.0350 (10)0.0654 (14)−0.0012 (9)−0.0191 (10)0.0139 (9)
C10.0444 (16)0.0562 (15)0.0425 (14)0.0076 (13)−0.0018 (12)0.0105 (12)
C20.068 (2)0.0745 (19)0.0507 (17)0.0153 (17)−0.0077 (15)0.0200 (15)
C30.066 (2)0.100 (2)0.0455 (17)0.022 (2)−0.0139 (15)0.0112 (17)
C40.0513 (18)0.090 (2)0.0512 (17)0.0001 (17)−0.0179 (14)−0.0003 (16)
C50.0446 (16)0.0620 (16)0.0495 (15)−0.0029 (13)−0.0072 (13)0.0081 (13)
C60.0372 (14)0.0525 (14)0.0378 (13)0.0056 (12)−0.0054 (11)0.0087 (11)
C70.0417 (15)0.0443 (13)0.0445 (14)0.0030 (12)−0.0087 (12)0.0103 (11)
C80.0358 (14)0.0387 (12)0.0574 (15)−0.0030 (11)−0.0172 (12)0.0126 (11)
C90.0329 (13)0.0339 (11)0.0493 (14)−0.0015 (10)−0.0148 (11)0.0053 (10)
C100.0332 (13)0.0350 (11)0.0390 (13)0.0008 (10)−0.0045 (10)0.0007 (10)
C110.0361 (14)0.0584 (15)0.0488 (15)−0.0058 (12)−0.0059 (12)0.0083 (12)
C120.0338 (13)0.0354 (11)0.0338 (12)0.0009 (10)−0.0044 (10)0.0031 (9)
C130.0444 (15)0.0530 (14)0.0494 (15)−0.0021 (12)−0.0073 (12)0.0169 (12)
C140.0347 (13)0.0327 (11)0.0390 (13)0.0016 (10)−0.0090 (10)0.0057 (9)
C150.0369 (13)0.0328 (11)0.0380 (12)0.0016 (10)−0.0082 (10)0.0028 (10)
C160.0406 (15)0.0412 (13)0.0547 (15)−0.0008 (12)−0.0119 (12)0.0107 (11)
C170.0340 (14)0.0495 (14)0.0494 (15)−0.0022 (12)−0.0052 (12)0.0028 (12)
C180.0382 (15)0.0529 (15)0.0542 (16)0.0047 (13)−0.0055 (12)0.0039 (12)
C190.0429 (18)0.091 (2)0.069 (2)0.0100 (18)−0.0190 (15)0.0056 (17)
C200.0352 (17)0.114 (3)0.079 (2)−0.0092 (19)−0.0133 (16)−0.011 (2)
C210.050 (2)0.096 (2)0.086 (2)−0.0327 (18)−0.0060 (18)0.008 (2)
C220.0540 (19)0.0697 (18)0.0668 (19)−0.0183 (15)−0.0059 (15)0.0136 (15)
O10.0706 (15)0.0566 (11)0.0683 (14)−0.0086 (11)−0.0167 (11)0.0253 (10)
O20.0728 (15)0.0334 (9)0.0996 (15)−0.0046 (9)−0.0467 (12)0.0197 (9)
O30.0427 (10)0.0366 (8)0.0548 (10)0.0001 (8)−0.0179 (8)0.0135 (7)
O40.0557 (13)0.0601 (11)0.0935 (16)0.0018 (10)−0.0228 (11)0.0293 (11)
S10.0398 (4)0.0391 (3)0.0577 (4)−0.0084 (3)−0.0212 (3)0.0167 (3)
N1—C71.270 (3)C11—H11A0.9600
N1—N21.368 (3)C11—H11B0.9600
N2—C81.326 (3)C11—H11C0.9600
N2—H20.8600C12—C141.355 (3)
N3—C161.261 (3)C12—C131.491 (3)
N3—N41.365 (3)C13—H13A0.9600
N4—C151.331 (3)C13—H13B0.9600
N4—H40.8600C13—H13C0.9600
C1—O11.337 (3)C14—C151.462 (3)
C1—C21.368 (3)C14—S11.708 (2)
C1—C61.391 (4)C15—O31.217 (3)
C2—C31.354 (4)C16—C171.432 (3)
C2—H2A0.9300C16—H16A0.9300
C3—C41.370 (4)C17—C221.375 (4)
C3—H3A0.9300C17—C181.384 (4)
C4—C51.364 (4)C18—O41.338 (3)
C4—H4A0.9300C18—C191.367 (4)
C5—C61.377 (3)C19—C201.355 (5)
C5—H5A0.9300C19—H19A0.9300
C6—C71.433 (3)C20—C211.361 (5)
C7—H7A0.9300C20—H20A0.9300
C8—O21.205 (3)C21—C221.354 (4)
C8—C91.476 (3)C21—H21A0.9300
C9—C101.355 (3)C22—H22A0.9300
C9—S11.690 (3)O1—H10.8200
C10—C121.411 (3)O4—H4B0.8200
C10—C111.477 (4)
C7—N1—N2117.0 (2)H11A—C11—H11C109.5
C8—N2—N1118.42 (19)H11B—C11—H11C109.5
C8—N2—H2120.8C14—C12—C10111.9 (2)
N1—N2—H2120.8C14—C12—C13126.7 (2)
C16—N3—N4118.1 (2)C10—C12—C13121.3 (2)
C15—N4—N3117.69 (19)C12—C13—H13A109.5
C15—N4—H4121.2C12—C13—H13B109.5
N3—N4—H4121.2H13A—C13—H13B109.5
O1—C1—C2117.5 (3)C12—C13—H13C109.5
O1—C1—C6122.1 (2)H13A—C13—H13C109.5
C2—C1—C6120.4 (3)H13B—C13—H13C109.5
C3—C2—C1119.6 (3)C12—C14—C15126.6 (2)
C3—C2—H2A120.2C12—C14—S1112.18 (17)
C1—C2—H2A120.2C15—C14—S1121.11 (18)
C2—C3—C4121.3 (3)O3—C15—N4121.2 (2)
C2—C3—H3A119.4O3—C15—C14121.7 (2)
C4—C3—H3A119.4N4—C15—C14117.08 (19)
C5—C4—C3119.3 (3)N3—C16—C17119.9 (2)
C5—C4—H4A120.3N3—C16—H16A120.0
C3—C4—H4A120.3C17—C16—H16A120.0
C4—C5—C6120.9 (3)C22—C17—C18118.1 (3)
C4—C5—H5A119.6C22—C17—C16119.6 (2)
C6—C5—H5A119.6C18—C17—C16122.3 (2)
C5—C6—C1118.5 (2)O4—C18—C19117.7 (3)
C5—C6—C7119.0 (2)O4—C18—C17122.2 (2)
C1—C6—C7122.6 (2)C19—C18—C17120.1 (3)
N1—C7—C6120.5 (2)C20—C19—C18120.0 (3)
N1—C7—H7A119.8C20—C19—H19A120.0
C6—C7—H7A119.8C18—C19—H19A120.0
O2—C8—N2123.2 (2)C19—C20—C21120.9 (3)
O2—C8—C9121.3 (2)C19—C20—H20A119.6
N2—C8—C9115.5 (2)C21—C20—H20A119.6
C10—C9—C8131.5 (2)C22—C21—C20119.2 (3)
C10—C9—S1112.63 (17)C22—C21—H21A120.4
C8—C9—S1115.89 (19)C20—C21—H21A120.4
C9—C10—C12112.1 (2)C21—C22—C17121.6 (3)
C9—C10—C11125.2 (2)C21—C22—H22A119.2
C12—C10—C11122.6 (2)C17—C22—H22A119.2
C10—C11—H11A109.5C1—O1—H1109.5
C10—C11—H11B109.5C18—O4—H4B109.5
H11A—C11—H11B109.5C9—S1—C1491.09 (12)
C10—C11—H11C109.5
C7—N1—N2—C8172.0 (2)C11—C10—C12—C130.5 (3)
C16—N3—N4—C15−173.2 (2)C10—C12—C14—C15174.1 (2)
O1—C1—C2—C3−179.5 (3)C13—C12—C14—C15−9.0 (4)
C6—C1—C2—C3−0.5 (4)C10—C12—C14—S1−2.3 (2)
C1—C2—C3—C41.1 (5)C13—C12—C14—S1174.64 (18)
C2—C3—C4—C5−0.4 (5)N3—N4—C15—O33.1 (3)
C3—C4—C5—C6−1.1 (4)N3—N4—C15—C14−178.0 (2)
C4—C5—C6—C11.6 (4)C12—C14—C15—O3−20.8 (4)
C4—C5—C6—C7−178.9 (2)S1—C14—C15—O3155.27 (18)
O1—C1—C6—C5178.1 (2)C12—C14—C15—N4160.2 (2)
C2—C1—C6—C5−0.9 (4)S1—C14—C15—N4−23.7 (3)
O1—C1—C6—C7−1.3 (4)N4—N3—C16—C17−174.8 (2)
C2—C1—C6—C7179.7 (2)N3—C16—C17—C22178.7 (2)
N2—N1—C7—C6178.1 (2)N3—C16—C17—C181.8 (4)
C5—C6—C7—N1167.1 (2)C22—C17—C18—O4−179.2 (3)
C1—C6—C7—N1−13.4 (4)C16—C17—C18—O4−2.2 (4)
N1—N2—C8—O2−4.8 (4)C22—C17—C18—C190.6 (4)
N1—N2—C8—C9172.8 (2)C16—C17—C18—C19177.6 (2)
O2—C8—C9—C10−133.2 (3)O4—C18—C19—C20−179.9 (3)
N2—C8—C9—C1049.2 (4)C17—C18—C19—C200.3 (4)
O2—C8—C9—S145.7 (3)C18—C19—C20—C21−1.1 (5)
N2—C8—C9—S1−132.0 (2)C19—C20—C21—C221.0 (5)
C8—C9—C10—C12−179.5 (2)C20—C21—C22—C170.0 (5)
S1—C9—C10—C121.6 (2)C18—C17—C22—C21−0.8 (4)
C8—C9—C10—C113.4 (4)C16—C17—C22—C21−177.8 (3)
S1—C9—C10—C11−175.46 (18)C10—C9—S1—C14−2.47 (18)
C9—C10—C12—C140.4 (3)C8—C9—S1—C14178.49 (18)
C11—C10—C12—C14177.6 (2)C12—C14—S1—C92.72 (17)
C9—C10—C12—C13−176.7 (2)C15—C14—S1—C9−173.90 (18)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.912.626 (4)145
N2—H2···O3i0.861.972.789 (4)159
N4—H4···O2ii0.861.972.812 (4)165
O4—H4B···N30.821.852.569 (4)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.912.626 (4)145
N2—H2⋯O3i0.861.972.789 (4)159
N4—H4⋯O2ii0.861.972.812 (4)165
O4—H4B⋯N30.821.852.569 (4)146

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antimicrobial activity of some new thiazole, thiophene and pyrazole derivatives containing benzothiazole moiety.

Authors:  Samir Bondock; Walid Fadaly; Mohamed A Metwally
Journal:  Eur J Med Chem       Date:  2010-05-15       Impact factor: 6.514

3.  N,N,N,N-Tetra-kis(2-chloro-ethyl)-3,4-dimethyl-thio-phene-2,5-dicarboxamide.

Authors:  Yi-Dan Tang; Rong-Xia Geng; Cheng-He Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-12
  3 in total

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