Literature DB >> 21579991

N,N,N,N-Tetra-kis(2-chloro-ethyl)-3,4-dimethyl-thio-phene-2,5-dicarboxamide.

Yi-Dan Tang1, Rong-Xia Geng, Cheng-He Zhou.   

Abstract

In the title compound, C(16)H(22)Cl(4)N(2)O(2)S, the two imide groups adopt a trans arrangement relative to the central thienyl ring, so the four terminal 2-chloro-ethyl arms adopt different orientations. In the crystal, mol-ecules are linked by weak C-H⋯Cl and C-H⋯O hydrogen bonds into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21579991      PMCID: PMC2980083          DOI: 10.1107/S1600536809052374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to nitro­gen mustard agents as anti­tumor dugs, see: Zhuang et al. (2008 ▶). For the synthesis, see: Luo et al. (2007 ▶). For a related structure, see: Dong et al. (2006 ▶).

Experimental

Crystal data

C16H22Cl4N2O2S M = 448.22 Monoclinic, a = 7.9238 (4) Å b = 21.1712 (11) Å c = 12.6186 (7) Å β = 99.2380 (10)° V = 2089.39 (19) Å3 Z = 4 Mo Kα radiation μ = 0.68 mm−1 T = 298 K 0.25 × 0.22 × 0.20 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.849, T max = 0.876 13412 measured reflections 4008 independent reflections 3342 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.126 S = 1.04 4008 reflections 228 parameters H-atom parameters constrained Δρmax = 0.88 e Å−3 Δρmin = −0.63 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: n class="Gene">APEX2 (Bruker, 2004 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809052374/ng2703sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809052374/ng2703Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H22Cl4N2O2SF(000) = 928
Mr = 448.22Dx = 1.425 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7657 reflections
a = 7.9238 (4) Åθ = 1.0–28.3°
b = 21.1712 (11) ŵ = 0.68 mm1
c = 12.6186 (7) ÅT = 298 K
β = 99.238 (1)°Block, white
V = 2089.39 (19) Å30.25 × 0.22 × 0.20 mm
Z = 4
Bruker APEXII area-detector diffractometer4008 independent reflections
Radiation source: fine-focus sealed tube3342 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scanθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.849, Tmax = 0.876k = −26→26
13412 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0694P)2 + 1.0128P] where P = (Fo2 + 2Fc2)/3
4008 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.88 e Å3
0 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6440 (3)0.16192 (11)0.56639 (16)0.0422 (5)
C20.4663 (3)0.10478 (11)0.41970 (16)0.0443 (5)
C30.7314 (3)0.11337 (11)0.52879 (16)0.0443 (5)
C40.6267 (3)0.07973 (11)0.44327 (16)0.0452 (5)
C50.9129 (3)0.09640 (14)0.5718 (2)0.0604 (7)
H5A0.95960.12670.62510.091*
H5B0.97880.09650.51420.091*
H5C0.91660.05510.60340.091*
C60.6887 (4)0.02243 (13)0.3905 (2)0.0622 (7)
H6A0.59470.00330.34410.093*
H6B0.7362−0.00730.44450.093*
H6C0.77490.03480.34910.093*
C70.3109 (3)0.08236 (11)0.34627 (17)0.0458 (5)
C80.7126 (3)0.21071 (11)0.64859 (17)0.0422 (5)
C90.6710 (3)0.13373 (12)0.79073 (18)0.0500 (6)
H9A0.75020.12030.85340.060*
H9B0.67170.10220.73500.060*
C100.4939 (4)0.13895 (13)0.8188 (2)0.0643 (7)
H10A0.41280.14830.75470.077*
H10B0.49040.17320.86940.077*
C110.7869 (4)0.24259 (14)0.8346 (2)0.0575 (6)
H11A0.75870.22910.90310.069*
H11B0.72690.28190.81520.069*
C120.9744 (4)0.25440 (18)0.8472 (3)0.0832 (10)
H12A1.00700.28380.90590.100*
H12B1.00090.27380.78220.100*
C130.4527 (3)0.10073 (11)0.18708 (17)0.0459 (5)
H13A0.49240.06700.14510.055*
H13B0.54780.11320.24140.055*
C140.4016 (3)0.15598 (12)0.11482 (18)0.0504 (6)
H14A0.31090.14340.05770.060*
H14B0.49850.16960.08240.060*
C150.1637 (3)0.05019 (11)0.17242 (19)0.0497 (6)
H15A0.12730.01250.20630.060*
H15B0.19370.03790.10380.060*
C160.0165 (3)0.09661 (13)0.1536 (2)0.0577 (6)
H16A0.05140.13420.11900.069*
H16B−0.01480.10890.22190.069*
Cl11.09507 (11)0.18434 (6)0.87299 (8)0.0971 (3)
Cl20.43645 (12)0.06673 (3)0.87659 (6)0.0720 (2)
Cl3−0.16257 (10)0.06186 (4)0.07135 (7)0.0781 (3)
Cl40.32971 (10)0.22004 (3)0.18815 (6)0.0651 (2)
N10.3156 (2)0.07637 (9)0.24030 (14)0.0420 (4)
N20.7258 (2)0.19471 (9)0.75320 (14)0.0434 (4)
O10.1805 (3)0.06964 (11)0.38336 (14)0.0699 (6)
O20.7529 (3)0.26329 (8)0.62021 (14)0.0593 (5)
S10.43739 (8)0.16811 (3)0.50083 (4)0.04896 (18)
U11U22U33U12U13U23
C10.0423 (12)0.0513 (12)0.0326 (10)0.0084 (9)0.0052 (8)0.0022 (9)
C20.0492 (13)0.0534 (13)0.0302 (10)0.0059 (10)0.0066 (9)−0.0019 (9)
C30.0471 (13)0.0543 (13)0.0321 (10)0.0109 (10)0.0082 (9)0.0025 (9)
C40.0547 (14)0.0508 (12)0.0307 (10)0.0123 (10)0.0089 (9)0.0026 (9)
C50.0496 (15)0.0781 (18)0.0526 (14)0.0201 (13)0.0054 (11)−0.0018 (13)
C60.0777 (19)0.0630 (16)0.0451 (13)0.0261 (14)0.0073 (12)−0.0057 (11)
C70.0508 (14)0.0507 (12)0.0361 (11)0.0023 (10)0.0072 (10)0.0025 (9)
C80.0369 (12)0.0505 (12)0.0390 (11)0.0072 (9)0.0058 (9)0.0011 (9)
C90.0589 (15)0.0538 (13)0.0373 (11)0.0106 (11)0.0077 (10)0.0037 (10)
C100.0720 (19)0.0531 (14)0.0737 (17)0.0027 (13)0.0295 (14)0.0103 (13)
C110.0556 (16)0.0686 (16)0.0464 (13)0.0011 (12)0.0026 (11)−0.0132 (12)
C120.068 (2)0.096 (2)0.079 (2)−0.0103 (17)−0.0062 (16)−0.0104 (18)
C130.0453 (13)0.0577 (13)0.0357 (11)0.0011 (10)0.0093 (9)−0.0033 (9)
C140.0542 (15)0.0603 (14)0.0376 (11)−0.0078 (11)0.0100 (10)−0.0009 (10)
C150.0568 (15)0.0478 (12)0.0435 (12)−0.0091 (11)0.0049 (10)−0.0084 (10)
C160.0510 (15)0.0590 (15)0.0592 (15)−0.0086 (12)−0.0024 (11)−0.0083 (12)
Cl10.0548 (5)0.1416 (9)0.0898 (6)0.0198 (5)−0.0041 (4)0.0276 (6)
Cl20.1030 (6)0.0533 (4)0.0654 (4)−0.0134 (3)0.0309 (4)−0.0015 (3)
Cl30.0515 (4)0.1027 (6)0.0773 (5)−0.0200 (4)0.0019 (3)−0.0212 (4)
Cl40.0750 (5)0.0475 (3)0.0758 (5)−0.0069 (3)0.0213 (4)−0.0027 (3)
N10.0468 (11)0.0451 (10)0.0340 (9)−0.0025 (8)0.0056 (8)−0.0029 (7)
N20.0432 (11)0.0517 (10)0.0346 (9)0.0023 (8)0.0037 (7)−0.0030 (8)
O10.0591 (12)0.1096 (17)0.0431 (9)−0.0159 (11)0.0148 (8)0.0033 (10)
O20.0674 (12)0.0544 (10)0.0566 (10)−0.0052 (8)0.0112 (9)0.0066 (8)
S10.0447 (3)0.0604 (4)0.0402 (3)0.0135 (3)0.0020 (2)−0.0095 (2)
C1—C31.366 (3)C10—H10A0.9700
C1—C81.502 (3)C10—H10B0.9700
C1—S11.717 (2)C11—N21.468 (3)
C2—C41.365 (3)C11—C121.490 (4)
C2—C71.494 (3)C11—H11A0.9700
C2—S11.724 (2)C11—H11B0.9700
C3—C41.440 (3)C12—Cl11.766 (4)
C3—C51.497 (3)C12—H12A0.9700
C4—C61.504 (3)C12—H12B0.9700
C5—H5A0.9600C13—N11.460 (3)
C5—H5B0.9600C13—C141.498 (3)
C5—H5C0.9600C13—H13A0.9700
C6—H6A0.9600C13—H13B0.9700
C6—H6B0.9600C14—Cl41.786 (3)
C6—H6C0.9600C14—H14A0.9700
C7—O11.231 (3)C14—H14B0.9700
C7—N11.350 (3)C15—N11.469 (3)
C8—O21.227 (3)C15—C161.514 (4)
C8—N21.350 (3)C15—H15A0.9700
C9—N21.465 (3)C15—H15B0.9700
C9—C101.505 (4)C16—Cl31.777 (3)
C9—H9A0.9700C16—H16A0.9700
C9—H9B0.9700C16—H16B0.9700
C10—Cl21.784 (3)
C3—C1—C8127.6 (2)N2—C11—H11A108.8
C3—C1—S1112.81 (17)C12—C11—H11A108.8
C8—C1—S1119.44 (16)N2—C11—H11B108.8
C4—C2—C7131.1 (2)C12—C11—H11B108.8
C4—C2—S1112.36 (17)H11A—C11—H11B107.7
C7—C2—S1116.12 (17)C11—C12—Cl1112.3 (3)
C1—C3—C4111.6 (2)C11—C12—H12A109.1
C1—C3—C5124.5 (2)Cl1—C12—H12A109.1
C4—C3—C5123.9 (2)C11—C12—H12B109.1
C2—C4—C3112.1 (2)Cl1—C12—H12B109.1
C2—C4—C6125.2 (2)H12A—C12—H12B107.9
C3—C4—C6122.7 (2)N1—C13—C14114.0 (2)
C3—C5—H5A109.5N1—C13—H13A108.7
C3—C5—H5B109.5C14—C13—H13A108.7
H5A—C5—H5B109.5N1—C13—H13B108.7
C3—C5—H5C109.5C14—C13—H13B108.7
H5A—C5—H5C109.5H13A—C13—H13B107.6
H5B—C5—H5C109.5C13—C14—Cl4110.80 (15)
C4—C6—H6A109.5C13—C14—H14A109.5
C4—C6—H6B109.5Cl4—C14—H14A109.5
H6A—C6—H6B109.5C13—C14—H14B109.5
C4—C6—H6C109.5Cl4—C14—H14B109.5
H6A—C6—H6C109.5H14A—C14—H14B108.1
H6B—C6—H6C109.5N1—C15—C16112.64 (19)
O1—C7—N1121.0 (2)N1—C15—H15A109.1
O1—C7—C2119.5 (2)C16—C15—H15A109.1
N1—C7—C2119.6 (2)N1—C15—H15B109.1
O2—C8—N2122.0 (2)C16—C15—H15B109.1
O2—C8—C1120.3 (2)H15A—C15—H15B107.8
N2—C8—C1117.7 (2)C15—C16—Cl3110.22 (18)
N2—C9—C10110.34 (19)C15—C16—H16A109.6
N2—C9—H9A109.6Cl3—C16—H16A109.6
C10—C9—H9A109.6C15—C16—H16B109.6
N2—C9—H9B109.6Cl3—C16—H16B109.6
C10—C9—H9B109.6H16A—C16—H16B108.1
H9A—C9—H9B108.1C7—N1—C13124.28 (19)
C9—C10—Cl2110.00 (19)C7—N1—C15117.58 (19)
C9—C10—H10A109.7C13—N1—C15117.75 (17)
Cl2—C10—H10A109.7C8—N2—C9123.80 (19)
C9—C10—H10B109.7C8—N2—C11118.4 (2)
Cl2—C10—H10B109.7C9—N2—C11117.63 (19)
H10A—C10—H10B108.2C1—S1—C291.11 (11)
N2—C11—C12113.7 (2)
D—H···AD—HH···AD···AD—H···A
C14—H14B···O2i0.972.453.257 (3)141
C14—H14A···Cl1ii0.972.803.632 (3)145
C6—H6B···O1iii0.962.543.474 (3)166
C5—H5B···O1iv0.962.543.477 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14B⋯O2i0.972.453.257 (3)141
C14—H14A⋯Cl1ii0.972.803.632 (3)145
C6—H6B⋯O1iii0.962.543.474 (3)166
C5—H5B⋯O1iv0.962.543.477 (3)165

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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