Literature DB >> 22719511

9-(2-Bromo-phen-oxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Damian Trzybiński1, Andrzej Sieradzan, Karol Krzymiński, Jerzy Błażejowski.   

Abstract

In the crystal structure of the title compound, C(21)H(15)BrNO(2) (+)·CF(3)SO(3) (-), adjacent cations are linked through C-Br⋯π and π-π contacts [centroid-centroid distance = 3.744 (2) Å], and neighbouring cations and anions via C-H⋯O, C-F⋯π and S-O⋯π inter-actions. The acridine and benzene ring systems are oriented at a dihedral angle of 18.7 (1)°. The carb-oxy group is twisted at an angle of 69.3 (1)° relative to the acridine skeleton. The mean planes of adjacent acridine moieties are either parallel or inclined at an angle of 27.8 (1)° in the lattice.

Entities:  

Year:  2012        PMID: 22719511      PMCID: PMC3379313          DOI: 10.1107/S1600536812020892

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemiluminescent properties of 9-phen­oxy­carbonyl-10-methyl­acridinium trifluoro­methane­sulfonates, see: King et al. (2007 ▶); Krzymiński et al. (2011 ▶); Roda et al. (2003 ▶); Zomer & Jacquemijns (2001 ▶). For related structures, see: Trzybiński et al. (2010 ▶). For inter­molecular inter­actions, see: Dorn et al. (2005 ▶); Hunter et al. (2001 ▶); Novoa et al. (2006 ▶); Seo et al. (2009 ▶); Sikorski et al. (2005 ▶); Trzybiński et al. (2010 ▶). For similar C–Br⋯π, π–π, C–H⋯O, C–F⋯π and S–O⋯π inter­actions in related compounds, see: Sikorski et al. (2005 ▶); Trzybiński et al. (2010 ▶). For the synthesis, see: Sato (1996 ▶); Trzybiński et al. (2010 ▶).

Experimental

Crystal data

C21H15BrNO2CF3O3S M = 542.32 Monoclinic, a = 12.5718 (8) Å b = 20.3617 (16) Å c = 8.5162 (6) Å β = 104.498 (7)° V = 2110.6 (3) Å3 Z = 4 Mo Kα radiation μ = 2.11 mm−1 T = 295 K 0.46 × 0.25 × 0.02 mm

Data collection

Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.668, T max = 1.000 16372 measured reflections 3735 independent reflections 2348 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.088 S = 0.92 3735 reflections 299 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812020892/fj2548sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020892/fj2548Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812020892/fj2548Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15BrNO2+·CF3O3SF(000) = 1088
Mr = 542.32Dx = 1.707 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1539 reflections
a = 12.5718 (8) Åθ = 3.0–29.2°
b = 20.3617 (16) ŵ = 2.11 mm1
c = 8.5162 (6) ÅT = 295 K
β = 104.498 (7)°Plate, light-orange
V = 2110.6 (3) Å30.46 × 0.25 × 0.02 mm
Z = 4
Oxford Diffraction Gemini R Ultra Ruby CCD diffractometer3735 independent reflections
Radiation source: Enhanced (Mo) X-ray Source2348 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 10.4002 pixels mm-1θmax = 25.1°, θmin = 3.2°
ω scansh = −14→11
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −24→23
Tmin = 0.668, Tmax = 1.000l = −10→10
16372 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 0.92w = 1/[σ2(Fo2) + (0.0518P)2] where P = (Fo2 + 2Fc2)/3
3735 reflections(Δ/σ)max = 0.001
299 parametersΔρmax = 0.46 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.5650 (3)0.70124 (15)0.5969 (4)0.0507 (8)
H10.50480.72090.62270.061*
C20.6310 (3)0.73723 (16)0.5286 (4)0.0575 (9)
H20.61700.78180.50980.069*
C30.7204 (3)0.70832 (18)0.4856 (4)0.0581 (9)
H30.76390.73370.43550.070*
C40.7451 (3)0.64367 (16)0.5157 (3)0.0517 (8)
H40.80480.62520.48600.062*
C50.6664 (3)0.43392 (15)0.7299 (4)0.0532 (8)
H50.73140.41660.71400.064*
C60.5970 (3)0.39546 (15)0.7872 (4)0.0586 (9)
H60.61540.35160.80990.070*
C70.4988 (3)0.41906 (15)0.8135 (4)0.0525 (8)
H70.45190.39100.85030.063*
C80.4724 (2)0.48279 (14)0.7851 (3)0.0457 (7)
H80.40780.49880.80520.055*
C90.5181 (2)0.59299 (13)0.6949 (3)0.0355 (7)
N100.70556 (19)0.54005 (11)0.6297 (2)0.0397 (6)
C110.5865 (2)0.63282 (13)0.6305 (3)0.0379 (7)
C120.6800 (2)0.60492 (14)0.5919 (3)0.0405 (7)
C130.5419 (2)0.52598 (13)0.7246 (3)0.0366 (7)
C140.6396 (2)0.50086 (13)0.6942 (3)0.0380 (7)
C150.4213 (2)0.62290 (13)0.7426 (3)0.0388 (7)
O160.32648 (15)0.60104 (8)0.6463 (2)0.0410 (5)
O170.42777 (16)0.66151 (10)0.8497 (2)0.0541 (6)
C180.2280 (2)0.62507 (14)0.6773 (3)0.0417 (7)
C190.1815 (2)0.68158 (14)0.6025 (3)0.0457 (8)
C200.0812 (3)0.70147 (17)0.6251 (4)0.0596 (9)
H200.04760.73920.57430.072*
C210.0311 (3)0.6654 (2)0.7228 (4)0.0664 (10)
H21−0.03620.67910.73820.080*
C220.0792 (3)0.60940 (19)0.7976 (4)0.0637 (10)
H220.04490.58550.86390.076*
C230.1787 (3)0.58855 (15)0.7748 (4)0.0509 (8)
H230.21170.55050.82450.061*
Br240.25462 (3)0.731793 (18)0.47628 (4)0.06770 (16)
C250.8105 (3)0.51466 (16)0.6062 (4)0.0605 (9)
H25A0.82610.47280.65870.091*
H25B0.86850.54490.65220.091*
H25C0.80500.50980.49230.091*
S260.17372 (8)0.40673 (5)0.95720 (10)0.0608 (3)
O270.2606 (2)0.41546 (17)0.8843 (4)0.1142 (11)
O280.1816 (3)0.35388 (13)1.0698 (3)0.0968 (9)
O290.1332 (2)0.46570 (12)1.0126 (3)0.0852 (8)
C300.0621 (3)0.38096 (18)0.7915 (4)0.0625 (9)
F310.0855 (2)0.32387 (11)0.7309 (3)0.0976 (7)
F320.0450 (2)0.42450 (12)0.6698 (2)0.0985 (7)
F33−0.03080 (19)0.37394 (13)0.8308 (3)0.1006 (8)
U11U22U33U12U13U23
C10.044 (2)0.0501 (19)0.0606 (18)0.0065 (16)0.0176 (16)0.0073 (15)
C20.056 (2)0.0465 (18)0.072 (2)−0.0008 (17)0.0180 (19)0.0134 (16)
C30.053 (2)0.063 (2)0.061 (2)−0.0112 (18)0.0200 (17)0.0060 (16)
C40.045 (2)0.060 (2)0.0563 (18)−0.0036 (17)0.0233 (16)−0.0003 (15)
C50.053 (2)0.0488 (19)0.0603 (19)0.0127 (17)0.0193 (16)−0.0009 (15)
C60.068 (3)0.0403 (18)0.068 (2)0.0100 (18)0.0181 (19)0.0076 (15)
C70.051 (2)0.050 (2)0.0576 (19)−0.0015 (17)0.0163 (16)0.0083 (15)
C80.0402 (19)0.0512 (19)0.0463 (16)0.0000 (15)0.0122 (14)0.0017 (14)
C90.0288 (16)0.0437 (17)0.0319 (13)0.0022 (13)0.0035 (12)−0.0038 (12)
N100.0327 (14)0.0451 (14)0.0426 (13)0.0004 (12)0.0120 (11)−0.0088 (11)
C110.0318 (17)0.0444 (17)0.0365 (14)−0.0006 (14)0.0065 (13)0.0004 (12)
C120.0351 (18)0.0513 (19)0.0350 (14)−0.0040 (15)0.0086 (13)−0.0073 (13)
C130.0297 (17)0.0463 (18)0.0328 (14)0.0000 (13)0.0058 (12)−0.0044 (12)
C140.0345 (18)0.0438 (18)0.0342 (14)0.0004 (14)0.0056 (13)−0.0061 (12)
C150.0392 (19)0.0388 (16)0.0392 (16)0.0002 (14)0.0112 (14)0.0036 (13)
O160.0297 (11)0.0477 (11)0.0461 (11)0.0011 (9)0.0102 (9)−0.0073 (9)
O170.0409 (13)0.0674 (14)0.0534 (12)−0.0011 (11)0.0105 (10)−0.0193 (11)
C180.0297 (17)0.0493 (18)0.0453 (15)0.0000 (15)0.0079 (13)−0.0118 (14)
C190.0331 (19)0.0549 (19)0.0455 (16)0.0011 (15)0.0031 (14)−0.0113 (14)
C200.045 (2)0.065 (2)0.062 (2)0.0092 (19)−0.0010 (17)−0.0164 (18)
C210.032 (2)0.091 (3)0.076 (2)−0.001 (2)0.0114 (19)−0.033 (2)
C220.048 (2)0.085 (3)0.062 (2)−0.016 (2)0.0208 (18)−0.0191 (19)
C230.042 (2)0.0555 (19)0.0585 (19)−0.0048 (16)0.0189 (16)−0.0061 (15)
Br240.0705 (3)0.0676 (3)0.0633 (2)0.01066 (19)0.01349 (18)0.01921 (17)
C250.045 (2)0.058 (2)0.086 (2)0.0032 (17)0.0298 (18)−0.0099 (18)
S260.0498 (6)0.0710 (6)0.0608 (5)−0.0004 (4)0.0121 (4)−0.0092 (4)
O270.0577 (19)0.157 (3)0.143 (3)−0.0291 (19)0.0528 (18)−0.044 (2)
O280.130 (3)0.0818 (18)0.0673 (15)0.0238 (17)0.0033 (16)0.0126 (14)
O290.108 (2)0.0632 (16)0.0888 (17)0.0013 (15)0.0326 (16)−0.0232 (13)
C300.060 (3)0.074 (3)0.061 (2)−0.008 (2)0.0304 (19)−0.0021 (19)
F310.123 (2)0.0832 (16)0.0873 (14)−0.0155 (14)0.0280 (14)−0.0331 (12)
F320.1056 (19)0.1177 (19)0.0672 (13)0.0148 (15)0.0119 (13)0.0236 (13)
F330.0587 (15)0.140 (2)0.1082 (17)−0.0275 (14)0.0301 (13)−0.0134 (15)
C1—C21.343 (4)C13—C141.412 (4)
C1—C111.434 (4)C15—O171.192 (3)
C1—H10.9300C15—O161.342 (3)
C2—C31.397 (5)O16—C181.417 (3)
C2—H20.9300C18—C231.372 (4)
C3—C41.362 (5)C18—C191.373 (4)
C3—H30.9300C19—C201.383 (4)
C4—C121.407 (4)C19—Br241.882 (3)
C4—H40.9300C20—C211.375 (5)
C5—C61.351 (4)C20—H200.9300
C5—C141.419 (4)C21—C221.371 (5)
C5—H50.9300C21—H210.9300
C6—C71.394 (4)C22—C231.380 (5)
C6—H60.9300C22—H220.9300
C7—C81.346 (4)C23—H230.9300
C7—H70.9300C25—H25A0.9600
C8—C131.424 (4)C25—H25B0.9600
C8—H80.9300C25—H25C0.9600
C9—C111.391 (4)S26—O271.397 (3)
C9—C131.406 (4)S26—O281.428 (3)
C9—C151.505 (4)S26—O291.430 (2)
N10—C141.362 (3)S26—C301.801 (4)
N10—C121.378 (3)C30—F331.301 (4)
N10—C251.476 (4)C30—F311.334 (4)
C11—C121.416 (4)C30—F321.340 (4)
C2—C1—C11120.7 (3)C13—C14—C5118.7 (3)
C2—C1—H1119.7O17—C15—O16124.5 (3)
C11—C1—H1119.7O17—C15—C9124.6 (3)
C1—C2—C3120.5 (3)O16—C15—C9110.8 (2)
C1—C2—H2119.7C15—O16—C18117.1 (2)
C3—C2—H2119.7C23—C18—C19122.0 (3)
C4—C3—C2121.2 (3)C23—C18—O16118.3 (3)
C4—C3—H3119.4C19—C18—O16119.6 (3)
C2—C3—H3119.4C18—C19—C20118.6 (3)
C3—C4—C12119.8 (3)C18—C19—Br24120.5 (2)
C3—C4—H4120.1C20—C19—Br24120.9 (3)
C12—C4—H4120.1C21—C20—C19120.0 (3)
C6—C5—C14119.6 (3)C21—C20—H20120.0
C6—C5—H5120.2C19—C20—H20120.0
C14—C5—H5120.2C22—C21—C20120.7 (3)
C5—C6—C7122.4 (3)C22—C21—H21119.7
C5—C6—H6118.8C20—C21—H21119.7
C7—C6—H6118.8C21—C22—C23120.0 (3)
C8—C7—C6119.5 (3)C21—C22—H22120.0
C8—C7—H7120.3C23—C22—H22120.0
C6—C7—H7120.3C18—C23—C22118.8 (3)
C7—C8—C13120.9 (3)C18—C23—H23120.6
C7—C8—H8119.5C22—C23—H23120.6
C13—C8—H8119.5N10—C25—H25A109.5
C11—C9—C13120.8 (3)N10—C25—H25B109.5
C11—C9—C15119.5 (2)H25A—C25—H25B109.5
C13—C9—C15119.6 (3)N10—C25—H25C109.5
C14—N10—C12121.7 (2)H25A—C25—H25C109.5
C14—N10—C25120.3 (2)H25B—C25—H25C109.5
C12—N10—C25117.9 (2)O27—S26—O28117.6 (2)
C9—C11—C12119.2 (3)O27—S26—O29115.00 (18)
C9—C11—C1122.7 (3)O28—S26—O29112.46 (17)
C12—C11—C1118.0 (3)O27—S26—C30103.37 (18)
N10—C12—C4121.1 (3)O28—S26—C30102.49 (17)
N10—C12—C11119.3 (3)O29—S26—C30103.38 (17)
C4—C12—C11119.6 (3)F33—C30—F31107.6 (3)
C9—C13—C14118.3 (3)F33—C30—F32106.9 (3)
C9—C13—C8122.8 (3)F31—C30—F32106.6 (3)
C14—C13—C8118.9 (3)F33—C30—S26113.8 (2)
N10—C14—C13120.5 (2)F31—C30—S26110.6 (3)
N10—C14—C5120.9 (3)F32—C30—S26110.8 (2)
C11—C1—C2—C31.5 (5)C8—C13—C14—N10177.1 (2)
C1—C2—C3—C4−1.9 (5)C9—C13—C14—C5177.5 (2)
C2—C3—C4—C12−0.2 (4)C8—C13—C14—C5−2.0 (4)
C14—C5—C6—C7−0.1 (5)C6—C5—C14—N10−177.1 (3)
C5—C6—C7—C8−1.7 (5)C6—C5—C14—C132.0 (4)
C6—C7—C8—C131.6 (4)C11—C9—C15—O17−65.8 (3)
C13—C9—C11—C121.2 (4)C13—C9—C15—O17110.5 (3)
C15—C9—C11—C12177.5 (2)C11—C9—C15—O16113.1 (3)
C13—C9—C11—C1179.5 (2)C13—C9—C15—O16−70.5 (3)
C15—C9—C11—C1−4.3 (4)O17—C15—O16—C18−1.1 (4)
C2—C1—C11—C9−177.3 (3)C9—C15—O16—C18179.9 (2)
C2—C1—C11—C121.0 (4)C15—O16—C18—C23−94.4 (3)
C14—N10—C12—C4−175.8 (2)C15—O16—C18—C1989.3 (3)
C25—N10—C12—C47.3 (4)C23—C18—C19—C20−0.9 (4)
C14—N10—C12—C114.1 (3)O16—C18—C19—C20175.3 (2)
C25—N10—C12—C11−172.7 (2)C23—C18—C19—Br24177.7 (2)
C3—C4—C12—N10−177.4 (3)O16—C18—C19—Br24−6.2 (3)
C3—C4—C12—C112.7 (4)C18—C19—C20—C211.0 (4)
C9—C11—C12—N10−4.6 (3)Br24—C19—C20—C21−177.5 (2)
C1—C11—C12—N10177.0 (2)C19—C20—C21—C22−0.4 (5)
C9—C11—C12—C4175.3 (2)C20—C21—C22—C23−0.3 (5)
C1—C11—C12—C4−3.0 (4)C19—C18—C23—C220.2 (4)
C11—C9—C13—C142.7 (3)O16—C18—C23—C22−176.0 (2)
C15—C9—C13—C14−173.5 (2)C21—C22—C23—C180.4 (4)
C11—C9—C13—C8−177.8 (2)O27—S26—C30—F33−175.8 (3)
C15—C9—C13—C86.0 (4)O28—S26—C30—F3361.5 (3)
C7—C8—C13—C9−179.3 (2)O29—S26—C30—F33−55.6 (3)
C7—C8—C13—C140.2 (4)O27—S26—C30—F3162.8 (3)
C12—N10—C14—C130.0 (3)O28—S26—C30—F31−59.9 (3)
C25—N10—C14—C13176.7 (2)O29—S26—C30—F31−177.0 (2)
C12—N10—C14—C5179.0 (2)O27—S26—C30—F32−55.2 (3)
C25—N10—C14—C5−4.2 (4)O28—S26—C30—F32−177.9 (3)
C9—C13—C14—N10−3.4 (3)O29—S26—C30—F3265.0 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3···O28i0.932.543.289 (5)137
C7—H7···O270.932.543.200 (5)128
XI···JI···JX···JXI···J
C19—Br24···Cg4ii3.523 (2)4.847 (3)124.6 (1)
C30—F32···Cg4iii3.648 (2)4.310 (4)110.8 (2)
S26—O27···Cg1iv3.821 (3)3.708 (2)74.8 (2)
S26—O28···Cg1iv3.414 (3)3.708 (2)90.3 (2)
S26—O28···Cg2iv3.358 (3)4.445 (2)132.2 (2)
IJCgI···CgJDihedral angleCgI_PerpCgI_Offset
13v3.744 (2)2.74 (13)3.703 (2)0.553 (2)
31v3.744 (2)2.74 (13)3.717 (2)0.549 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O28i0.932.543.289 (5)137
C7—H7⋯O270.932.543.200 (5)128

Symmetry code: (i) .

Table 2

C—F⋯π, C—Br⋯π and S—O⋯π inter­actions (Å, °)

Cg1, Cg2 and Cg4 are the centroids of the C9/N10/C11–C14, C1–C4/C11/C12 and C18–C23 rings, respectively.

XIJIJXJXIJ
C19—Br24⋯Cg4ii3.523 (2)4.847 (3)124.6 (1)
C30—F32⋯Cg4iii3.648 (2)4.310 (4)110.8 (2)
S26—O27⋯Cg1iv3.821 (3)3.708 (2)74.8 (2)
S26—O28⋯Cg1iv3.414 (3)3.708 (2)90.3 (2)
S26—O28⋯Cg2iv3.358 (3)4.445 (2)132.2 (2)

Symmetry codes: (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  9-(2,6-Difluorophenoxycarbonyl)-10-methylacridinium trifluoromethanesulfonate and its precursor 2,6-difluorophenyl acridine-9-carboxylate: C-H...O, C-F...pi, S-O...pi and pi-pi stacking interactions.

Authors:  Artur Sikorski; Karol Krzymiński; Agnieszka Niziołek; Jerzy Błazejowski
Journal:  Acta Crystallogr C       Date:  2005-11-11       Impact factor: 1.172

3.  Chemiluminogenic features of 10-methyl-9-(phenoxycarbonyl)acridinium trifluoromethanesulfonates alkyl substituted at the benzene ring in aqueous media.

Authors:  Karol Krzymiński; Agnieszka Ożóg; Piotr Malecha; Alexander D Roshal; Agnieszka Wróblewska; Beata Zadykowicz; Jerzy Błażejowski
Journal:  J Org Chem       Date:  2011-01-19       Impact factor: 4.354

4.  5-Bromo-2,7-dimethyl-3-methyl-sulfinyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-29

5.  Flow injection analysis of H2O2 in natural waters using acridinium ester chemiluminescence: method development and optimization using a kinetic model.

Authors:  D Whitney King; William J Cooper; Steven A Rusak; Barrie M Peake; James J Kiddle; Daniel W O'Sullivan; Megan L Melamed; Chris R Morgan; Stephen M Theberge
Journal:  Anal Chem       Date:  2007-04-25       Impact factor: 6.986

6.  9-(4-Bromo-phenoxy-carbon-yl)-10-methyl-acridinium trifluoro-methane-sulfonate.

Authors:  Damian Trzybiński; Karol Krzymiński; Artur Sikorski; Jerzy Błażejowski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-12

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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