Literature DB >> 22719503

(E)-3-Dimethyl-amino-1-(2,5-dimethyl-thio-phen-3-yl)prop-2-en-1-one.

Mostafa M Ghorab, Mansour S Al-Said, Hazem A Ghabbour, Tze Shyang Chia, Hoong-Kun Fun.   

Abstract

In the title compound, C(11)H(15)NOS, the 3-(dimethyl-amino)-prop-2-en-1-one unit is approximately planar [maximum deviation = 0.0975 (14) Å] and its mean plane of seven non-H atoms makes a dihedral angle of 6.96 (10)° with the thio-phene ring. In the crystal, mol-ecules are linked by pairs of C-H⋯O hydrogen bonds into inversion dimers with R(2) (2)(14) ring motifs. The dimers are stacked along the c axis through C-H⋯π inter-actions. The two methyl groups, attached to the thio-phene ring and the amino N atom, are each disordered over two orientations, with site-occupancy ratios of 0.59 (4):0.41 (4) and 0.74 (4):0.26 (4), respectively.

Entities:  

Year:  2012        PMID: 22719503      PMCID: PMC3379305          DOI: 10.1107/S1600536812021022

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and the biological activity of thio­phene derivatives, see: Ghorab et al. (2006 ▶); Al-Said et al. (2011 ▶); Shaaban et al. (2010 ▶); Krantz et al. (1990 ▶); Kikugawa & Ichino (1973 ▶); Gogte et al. (1967 ▶); Medower et al. (2008 ▶); Ghorab et al. (1998 ▶); Hassan et al. (1998 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H15NOS M = 209.30 Triclinic, a = 5.9114 (2) Å b = 7.5424 (2) Å c = 13.9940 (4) Å α = 81.274 (2)° β = 88.828 (3)° γ = 69.119 (3)° V = 575.83 (3) Å3 Z = 2 Cu Kα radiation μ = 2.24 mm−1 T = 296 K 0.82 × 0.15 × 0.07 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.260, T max = 0.859 7188 measured reflections 1897 independent reflections 1650 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.114 S = 1.08 1897 reflections 134 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812021022/is5136sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812021022/is5136Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812021022/is5136Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15NOSZ = 2
Mr = 209.30F(000) = 224
Triclinic, P1Dx = 1.207 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 5.9114 (2) ÅCell parameters from 967 reflections
b = 7.5424 (2) Åθ = 3.2–67.4°
c = 13.9940 (4) ŵ = 2.24 mm1
α = 81.274 (2)°T = 296 K
β = 88.828 (3)°Plate, pink
γ = 69.119 (3)°0.82 × 0.15 × 0.07 mm
V = 575.83 (3) Å3
Bruker SMART APEXII CCD area-detector diffractometer1897 independent reflections
Radiation source: fine-focus sealed tube1650 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 65.0°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −6→5
Tmin = 0.260, Tmax = 0.859k = −8→8
7188 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.0443P)2 + 0.1016P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1897 reflectionsΔρmax = 0.16 e Å3
134 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.010 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.02985 (11)0.64848 (8)0.08507 (4)0.0778 (3)
O10.0467 (3)0.8400 (2)0.37669 (10)0.0842 (5)
N10.3675 (3)1.2353 (2)0.39674 (11)0.0645 (4)
C1−0.0007 (3)0.7081 (3)0.19944 (13)0.0608 (5)
C20.1315 (3)0.8191 (3)0.21208 (12)0.0572 (4)
C30.2590 (4)0.8516 (3)0.12684 (14)0.0665 (5)
H3A0.35790.92440.12320.080*
C40.2241 (4)0.7685 (3)0.05249 (15)0.0722 (5)
C50.3269 (5)0.7734 (4)−0.04686 (17)0.0935 (8)
H5A0.47610.7964−0.04440.140*0.59 (4)
H5B0.21340.8744−0.09100.140*0.59 (4)
H5C0.35670.6526−0.06860.140*0.59 (4)
H5X0.48750.6789−0.04430.140*0.41 (4)
H5Y0.33290.8986−0.06880.140*0.41 (4)
H5Z0.22580.7459−0.09090.140*0.41 (4)
C6−0.1564 (4)0.6318 (3)0.26736 (16)0.0741 (6)
H6A−0.27500.73620.29300.111*
H6B−0.05680.54170.31940.111*
H6C−0.23680.56890.23300.111*
C70.1383 (3)0.8968 (3)0.30347 (13)0.0591 (5)
C80.2539 (3)1.0343 (3)0.30342 (13)0.0594 (5)
H8A0.32791.06840.24800.071*
C90.2569 (3)1.1156 (3)0.38331 (13)0.0580 (4)
H9A0.17051.08330.43510.070*
C100.3421 (4)1.3206 (3)0.48415 (16)0.0786 (6)
H10A0.24441.27120.52820.118*
H10B0.26581.45750.46840.118*
H10C0.49921.28960.51390.118*
C110.5161 (5)1.2903 (4)0.3226 (2)0.0893 (7)
H11A0.63851.17710.30580.134*0.74 (4)
H11B0.59171.36900.34670.134*0.74 (4)
H11C0.41611.36130.26630.134*0.74 (4)
H11X0.67891.25270.34800.134*0.26 (4)
H11Y0.45121.42700.30300.134*0.26 (4)
H11Z0.51631.22760.26780.134*0.26 (4)
U11U22U33U12U13U23
S10.0865 (4)0.0846 (4)0.0703 (4)−0.0331 (3)0.0027 (3)−0.0296 (3)
O10.1196 (13)0.1037 (12)0.0637 (8)−0.0794 (10)0.0170 (8)−0.0201 (7)
N10.0697 (10)0.0645 (9)0.0719 (10)−0.0393 (8)0.0060 (7)−0.0110 (7)
C10.0613 (10)0.0593 (10)0.0623 (10)−0.0210 (8)−0.0024 (8)−0.0123 (8)
C20.0598 (10)0.0558 (10)0.0570 (10)−0.0220 (8)−0.0008 (7)−0.0079 (8)
C30.0681 (12)0.0701 (12)0.0638 (11)−0.0280 (10)0.0062 (9)−0.0105 (9)
C40.0711 (12)0.0748 (13)0.0616 (11)−0.0145 (10)0.0038 (9)−0.0119 (9)
C50.1003 (18)0.1024 (19)0.0662 (13)−0.0218 (14)0.0163 (12)−0.0163 (12)
C60.0784 (14)0.0821 (14)0.0782 (13)−0.0463 (11)0.0042 (10)−0.0184 (10)
C70.0625 (11)0.0611 (11)0.0599 (10)−0.0301 (9)0.0011 (8)−0.0078 (8)
C80.0635 (11)0.0600 (11)0.0603 (10)−0.0294 (8)0.0065 (8)−0.0084 (8)
C90.0583 (10)0.0559 (10)0.0653 (10)−0.0289 (8)0.0025 (8)−0.0050 (8)
C100.0951 (16)0.0787 (14)0.0786 (13)−0.0489 (12)−0.0018 (11)−0.0164 (11)
C110.0905 (16)0.0933 (16)0.1066 (17)−0.0600 (14)0.0237 (13)−0.0189 (13)
S1—C41.715 (2)C5—H5Z0.9600
S1—C11.7161 (19)C6—H6A0.9600
O1—C71.239 (2)C6—H6B0.9600
N1—C91.325 (2)C6—H6C0.9600
N1—C101.447 (3)C7—C81.431 (3)
N1—C111.453 (3)C8—C91.357 (3)
C1—C21.364 (3)C8—H8A0.9300
C1—C61.502 (3)C9—H9A0.9300
C2—C31.434 (3)C10—H10A0.9600
C2—C71.492 (3)C10—H10B0.9600
C3—C41.348 (3)C10—H10C0.9600
C3—H3A0.9300C11—H11A0.9600
C4—C51.506 (3)C11—H11B0.9600
C5—H5A0.9600C11—H11C0.9600
C5—H5B0.9600C11—H11X0.9600
C5—H5C0.9600C11—H11Y0.9600
C5—H5X0.9600C11—H11Z0.9600
C5—H5Y0.9600
C4—S1—C193.45 (9)C1—C6—H6C109.5
C9—N1—C10121.97 (16)H6A—C6—H6C109.5
C9—N1—C11121.03 (18)H6B—C6—H6C109.5
C10—N1—C11116.98 (17)O1—C7—C8122.18 (17)
C2—C1—C6131.23 (18)O1—C7—C2119.57 (17)
C2—C1—S1110.76 (14)C8—C7—C2118.26 (16)
C6—C1—S1118.00 (14)C9—C8—C7120.80 (17)
C1—C2—C3111.44 (17)C9—C8—H8A119.6
C1—C2—C7123.46 (16)C7—C8—H8A119.6
C3—C2—C7125.09 (17)N1—C9—C8128.09 (17)
C4—C3—C2114.75 (19)N1—C9—H9A116.0
C4—C3—H3A122.6C8—C9—H9A116.0
C2—C3—H3A122.6N1—C10—H10A109.5
C3—C4—C5129.0 (2)N1—C10—H10B109.5
C3—C4—S1109.58 (15)H10A—C10—H10B109.5
C5—C4—S1121.38 (19)N1—C10—H10C109.5
C4—C5—H5A109.5H10A—C10—H10C109.5
C4—C5—H5B109.5H10B—C10—H10C109.5
C4—C5—H5C109.5N1—C11—H11A109.5
C4—C5—H5X109.5N1—C11—H11B109.5
C4—C5—H5Y109.5N1—C11—H11C109.5
H5X—C5—H5Y109.5N1—C11—H11X109.5
C4—C5—H5Z109.5N1—C11—H11Y109.5
H5X—C5—H5Z109.5H11X—C11—H11Y109.5
H5Y—C5—H5Z109.5N1—C11—H11Z109.5
C1—C6—H6A109.5H11X—C11—H11Z109.5
C1—C6—H6B109.5H11Y—C11—H11Z109.5
H6A—C6—H6B109.5
C4—S1—C1—C20.81 (15)C1—S1—C4—C5−179.91 (19)
C4—S1—C1—C6−178.17 (16)C1—C2—C7—O19.8 (3)
C6—C1—C2—C3178.17 (19)C3—C2—C7—O1−170.80 (19)
S1—C1—C2—C3−0.6 (2)C1—C2—C7—C8−170.86 (17)
C6—C1—C2—C7−2.3 (3)C3—C2—C7—C88.6 (3)
S1—C1—C2—C7178.87 (14)O1—C7—C8—C9−3.3 (3)
C1—C2—C3—C40.1 (2)C2—C7—C8—C9177.32 (17)
C7—C2—C3—C4−179.42 (18)C10—N1—C9—C8176.0 (2)
C2—C3—C4—C5179.6 (2)C11—N1—C9—C8−2.5 (3)
C2—C3—C4—S10.5 (2)C7—C8—C9—N1175.62 (18)
C1—S1—C4—C3−0.76 (17)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O1i0.962.463.410 (3)172
C5—H5B···Cg1ii0.962.773.641 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1/C1–C4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O1i0.962.463.410 (3)172
C5—H5BCg1ii0.962.773.641 (3)152

Symmetry codes: (i) ; (ii) .

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