Literature DB >> 22719432

1,1'-Bicyclo-hexyl-1,1'-diyl 2,2'-bipyridine-3,3'-dicarboxyl-ate.

Hoong-Kun Fun, Ming Yeng Lim, Ching Kheng Quah, Dongdong Wu.   

Abstract

The title compound, C(24)H(26)N(2)O(4), lies about a crystallographic twofold rotation axis. The cyclo-hexane rings adopts a chair conformation. The two pyridine rings form a dihedral angle of 41.02 (4)°. In the crystal, mol-ecules are linked via C-H⋯O and C-H⋯N hydrogen bonds into a layer parallel to the bc plane.

Entities:  

Year:  2012        PMID: 22719432      PMCID: PMC3379234          DOI: 10.1107/S1600536812018508

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the background to this study, see the first paper in this series: Fun, Quah, Wu & Zhang (2012 ▶). For a related structure, see: Fun, Quah & Wu (2012 ▶). For the stability of the temperature controller used in the the data collection, see: Cosier & Glazer (1986 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For the preparation, see: Wu et al. (2012 ▶).

Experimental

Crystal data

C24H26N2O4 M = 406.47 Monoclinic, a = 16.7647 (3) Å b = 10.2618 (2) Å c = 11.5755 (2) Å β = 99.810 (1)° V = 1962.28 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.53 × 0.24 × 0.12 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.952, T max = 0.989 11734 measured reflections 3578 independent reflections 2972 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.119 S = 1.04 3578 reflections 136 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018508/is5124sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018508/is5124Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018508/is5124Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H26N2O4F(000) = 864
Mr = 406.47Dx = 1.376 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4821 reflections
a = 16.7647 (3) Åθ = 2.3–32.4°
b = 10.2618 (2) ŵ = 0.09 mm1
c = 11.5755 (2) ÅT = 100 K
β = 99.810 (1)°Block, colourless
V = 1962.28 (6) Å30.53 × 0.24 × 0.12 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3578 independent reflections
Radiation source: fine-focus sealed tube2972 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 32.7°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −24→25
Tmin = 0.952, Tmax = 0.989k = −15→15
11734 measured reflectionsl = −14→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0602P)2 + 1.2358P] where P = (Fo2 + 2Fc2)/3
3578 reflections(Δ/σ)max = 0.001
136 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.07035 (4)0.91569 (6)0.32195 (5)0.01138 (14)
O20.08919 (4)0.79994 (7)0.15933 (6)0.01480 (15)
N10.03750 (5)0.47163 (8)0.36731 (7)0.01641 (17)
C10.13527 (6)0.68507 (10)0.44475 (8)0.01575 (18)
H1A0.16780.75830.47170.019*
C20.13993 (6)0.57190 (10)0.51086 (8)0.01792 (19)
H2A0.17570.56580.58370.022*
C30.09090 (6)0.46750 (10)0.46771 (8)0.01813 (19)
H3A0.09550.38890.51170.022*
C40.03211 (5)0.58187 (9)0.30384 (8)0.01315 (17)
C50.08212 (5)0.68998 (9)0.33802 (8)0.01229 (16)
C60.08110 (5)0.80731 (9)0.26097 (8)0.01163 (16)
C70.04781 (5)1.04426 (9)0.26757 (7)0.01063 (16)
C80.09239 (5)1.07527 (9)0.16519 (8)0.01365 (17)
H8A0.07601.01160.10130.016*
H8B0.07641.16310.13430.016*
C90.18467 (6)1.07060 (10)0.20256 (9)0.01769 (19)
H9A0.20130.98140.22890.021*
H9B0.21101.09210.13460.021*
C100.21245 (6)1.16711 (11)0.30191 (9)0.0207 (2)
H10A0.27161.15910.32800.025*
H10B0.20071.25720.27340.025*
C110.16867 (6)1.13963 (10)0.40464 (8)0.01758 (19)
H11A0.18421.20650.46600.021*
H11B0.18601.05370.43880.021*
C120.07650 (5)1.14012 (9)0.36753 (8)0.01346 (17)
H12A0.05851.22910.34220.016*
H12B0.05101.11710.43590.016*
U11U22U33U12U13U23
O10.0130 (3)0.0087 (3)0.0120 (3)0.0012 (2)0.0009 (2)0.0006 (2)
O20.0162 (3)0.0141 (3)0.0145 (3)0.0007 (2)0.0040 (2)−0.0013 (2)
N10.0203 (4)0.0111 (4)0.0178 (3)0.0014 (3)0.0030 (3)0.0021 (3)
C10.0156 (4)0.0141 (4)0.0164 (4)0.0025 (3)−0.0004 (3)−0.0002 (3)
C20.0196 (4)0.0177 (5)0.0154 (4)0.0054 (4)−0.0002 (3)0.0016 (3)
C30.0223 (4)0.0140 (4)0.0180 (4)0.0052 (4)0.0032 (3)0.0039 (3)
C40.0156 (4)0.0099 (4)0.0138 (4)0.0012 (3)0.0022 (3)0.0001 (3)
C50.0132 (3)0.0097 (4)0.0139 (3)0.0020 (3)0.0020 (3)0.0005 (3)
C60.0094 (3)0.0098 (4)0.0151 (4)−0.0001 (3)0.0003 (3)−0.0002 (3)
C70.0118 (3)0.0076 (3)0.0119 (3)−0.0002 (3)0.0003 (3)0.0009 (3)
C80.0132 (4)0.0137 (4)0.0140 (4)−0.0011 (3)0.0023 (3)0.0021 (3)
C90.0134 (4)0.0198 (5)0.0203 (4)−0.0020 (3)0.0040 (3)0.0032 (4)
C100.0143 (4)0.0193 (5)0.0271 (5)−0.0050 (4)−0.0001 (3)0.0018 (4)
C110.0141 (4)0.0167 (4)0.0200 (4)−0.0014 (3)−0.0028 (3)−0.0025 (4)
C120.0142 (4)0.0101 (4)0.0148 (4)−0.0005 (3)−0.0011 (3)−0.0023 (3)
O1—C61.3458 (11)C7—C7i1.5854 (17)
O1—C71.4828 (11)C8—C91.5344 (13)
O2—C61.2094 (11)C8—H8A0.9900
N1—C31.3414 (12)C8—H8B0.9900
N1—C41.3435 (12)C9—C101.5290 (15)
C1—C21.3856 (14)C9—H9A0.9900
C1—C51.3956 (12)C9—H9B0.9900
C1—H1A0.9500C10—C111.5264 (15)
C2—C31.3903 (15)C10—H10A0.9900
C2—H2A0.9500C10—H10B0.9900
C3—H3A0.9500C11—C121.5317 (13)
C4—C51.4061 (13)C11—H11A0.9900
C4—C4i1.5018 (18)C11—H11B0.9900
C5—C61.4968 (12)C12—H12A0.9900
C7—C121.5324 (12)C12—H12B0.9900
C7—C81.5382 (12)
C6—O1—C7124.05 (6)C7—C8—H8A109.2
C3—N1—C4118.24 (9)C9—C8—H8B109.2
C2—C1—C5119.12 (9)C7—C8—H8B109.2
C2—C1—H1A120.4H8A—C8—H8B107.9
C5—C1—H1A120.4C10—C9—C8110.80 (8)
C1—C2—C3118.24 (9)C10—C9—H9A109.5
C1—C2—H2A120.9C8—C9—H9A109.5
C3—C2—H2A120.9C10—C9—H9B109.5
N1—C3—C2123.60 (9)C8—C9—H9B109.5
N1—C3—H3A118.2H9A—C9—H9B108.1
C2—C3—H3A118.2C11—C10—C9109.94 (8)
N1—C4—C5121.94 (8)C11—C10—H10A109.7
N1—C4—C4i115.20 (6)C9—C10—H10A109.7
C5—C4—C4i122.84 (6)C11—C10—H10B109.7
C1—C5—C4118.74 (8)C9—C10—H10B109.7
C1—C5—C6119.82 (8)H10A—C10—H10B108.2
C4—C5—C6121.42 (8)C10—C11—C12112.15 (8)
O2—C6—O1127.53 (8)C10—C11—H11A109.2
O2—C6—C5122.52 (8)C12—C11—H11A109.2
O1—C6—C5109.95 (7)C10—C11—H11B109.2
O1—C7—C12103.07 (6)C12—C11—H11B109.2
O1—C7—C8112.90 (7)H11A—C11—H11B107.9
C12—C7—C8108.53 (7)C11—C12—C7112.42 (8)
O1—C7—C7i106.40 (5)C11—C12—H12A109.1
C12—C7—C7i111.54 (7)C7—C12—H12A109.1
C8—C7—C7i113.91 (8)C11—C12—H12B109.1
C9—C8—C7112.04 (7)C7—C12—H12B109.1
C9—C8—H8A109.2H12A—C12—H12B107.9
C5—C1—C2—C3−0.15 (14)C1—C5—C6—O1−53.79 (11)
C4—N1—C3—C21.26 (15)C4—C5—C6—O1128.11 (9)
C1—C2—C3—N1−2.13 (16)C6—O1—C7—C12−157.78 (7)
C3—N1—C4—C51.90 (14)C6—O1—C7—C8−40.90 (10)
C3—N1—C4—C4i−176.74 (10)C6—O1—C7—C7i84.75 (10)
C2—C1—C5—C43.07 (14)O1—C7—C8—C9−56.99 (10)
C2—C1—C5—C6−175.08 (8)C12—C7—C8—C956.61 (10)
N1—C4—C5—C1−4.06 (14)C7i—C7—C8—C9−178.48 (6)
C4i—C4—C5—C1174.47 (10)C7—C8—C9—C10−58.49 (11)
N1—C4—C5—C6174.05 (8)C8—C9—C10—C1156.01 (11)
C4i—C4—C5—C6−7.41 (15)C9—C10—C11—C12−54.88 (11)
C7—O1—C6—O214.66 (13)C10—C11—C12—C755.67 (11)
C7—O1—C6—C5−165.46 (7)O1—C7—C12—C1165.03 (9)
C1—C5—C6—O2126.10 (10)C8—C7—C12—C11−54.90 (10)
C4—C5—C6—O2−52.00 (13)C7i—C7—C12—C11178.81 (7)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O2ii0.952.603.5319 (12)168
C12—H12A···N1iii0.992.543.4641 (12)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O2i0.952.603.5319 (12)168
C12—H12A⋯N1ii0.992.543.4641 (12)156

Symmetry codes: (i) ; (ii) .

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