Literature DB >> 22719410

N-Hexyl-3-(4-hy-droxy-3,5-dimeth-oxy-phen-yl)propanamide.

L C R Andrade, J A Paixão, M J M de Almeida, E J Tavares da Silva, F M Fernandes Roleira.   

Abstract

In the title compound, C(17)H(27)NO(4), which is an hydro-sinapic acid derivative with increased lipophilicity conferred by an additional alkyl chain, the central and the hexyl linear chains contain slightly shorter bond lengths [C-N = 1.316 (2) Å; average linear chain C-C = 1.487 (6) Å] than reported average values [Csp(2)-N = 1.334, C-C for CH(2)-CH(2) = 1.524 and 1.513 Å for CH(2)-CH(3)]. The 4-hy-droxy-3,5-dimeth-oxy-phenyl plane [r.m.s. deviation 0.055 (12) Å] makes an angle of 59.89 (5)° with the central plane of the mol-ecule (composed of the N atom, the carbonyl group and the two methyl-ene C atoms linking the carbonyl group and the ring, [r.m.s. deviation 0.0026 (10) Å], which, in turn, makes an angle of 64.24 (13)° with the essentially planar hexyl chain [r.m.s. deviation 0.035 (18) Å]. The N-H group of the amide group is involved in a bifurcated hydrogen bond towards the hy-droxy and one of the meth-oxy O atoms of the 4-hy-droxy-3,5-dimeth-oxy-phenyl substituent of a neighbouring mol-ecule, forming a two-dimensional network in the (100) plane. In addition, the same hy-droxy group acts as a donor towards the carbonyl O atom of another neighbouring mol-ecule, forming chains running along the b axis.

Entities:  

Year:  2012        PMID: 22719410      PMCID: PMC3379212          DOI: 10.1107/S1600536812019022

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the dependence on their structural characteristics of the anti­cancer activity of phenolic acids and their derivatives, see: Gomes et al. (2003 ▶). For restrictions on protection of lipophilic systems due to the hydro­philic nature of mol­ecules in aqueous media, see: Gao & Hu (2010 ▶). For the synthesis, see: Roleira et al. (2010 ▶). For reference bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H27NO4 M = 309.40 Monoclinic, a = 19.1126 (5) Å b = 8.4086 (2) Å c = 11.0715 (3) Å β = 91.5691 (15)° V = 1778.64 (8) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.34 × 0.26 × 0.19 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2000 ▶) T min = 0.856, T max = 0.865 34604 measured reflections 4259 independent reflections 2478 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.172 S = 0.99 4255 reflections 204 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019022/bt5889sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019022/bt5889Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812019022/bt5889Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H27NO4Dx = 1.157 Mg m3
Mr = 309.40Melting point: 366.5 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 19.1126 (5) ÅCell parameters from 7386 reflections
b = 8.4086 (2) Åθ = 3.0–23.3°
c = 11.0715 (3) ŵ = 0.08 mm1
β = 91.5691 (15)°T = 293 K
V = 1778.64 (8) Å3Prism, colourless
Z = 40.34 × 0.26 × 0.19 mm
F(000) = 672
Bruker APEX CCD diffractometer4259 independent reflections
Radiation source: fine-focus sealed tube2478 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.038
φ and ω scansθmax = 27.9°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2000)h = −25→25
Tmin = 0.856, Tmax = 0.865k = −11→9
34604 measured reflectionsl = −12→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.172w = 1/[σ2(Fo2) + (0.094P)2 + 0.1703P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
4255 reflectionsΔρmax = 0.19 e Å3
204 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.014 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N0.75497 (7)−0.11966 (19)0.21012 (13)0.0636 (4)
H100.7363−0.05640.26100.076*
O30.58084 (7)0.45097 (14)0.08943 (12)0.0698 (4)
O40.67504 (7)0.49686 (13)−0.08385 (10)0.0651 (4)
H40.68770.5478−0.02400.098*
O50.73329 (7)0.25857 (15)−0.19467 (11)0.0676 (4)
O90.73578 (7)−0.30205 (15)0.06653 (12)0.0689 (4)
C10.61840 (9)0.03560 (18)0.00631 (14)0.0507 (4)
C20.58855 (9)0.16335 (19)0.06493 (15)0.0523 (4)
H20.55550.14540.12360.063*
C30.60757 (9)0.31751 (18)0.03669 (15)0.0511 (4)
C40.65672 (9)0.34669 (18)−0.05009 (14)0.0485 (4)
C50.68601 (9)0.21800 (19)−0.10955 (14)0.0510 (4)
C60.66706 (9)0.06345 (19)−0.08136 (14)0.0528 (4)
H60.6871−0.0216−0.12150.063*
C70.59855 (9)−0.13192 (19)0.04171 (16)0.0585 (5)
H7A0.6098−0.2039−0.02340.070*
H7B0.5484−0.13680.05250.070*
C80.63594 (9)−0.18697 (19)0.15739 (15)0.0549 (4)
H8A0.6284−0.10970.22080.066*
H8B0.6161−0.28740.18260.066*
C90.71300 (9)−0.20718 (18)0.14130 (15)0.0501 (4)
C110.83047 (10)−0.1231 (3)0.20557 (19)0.0850 (7)
H11A0.8472−0.01630.19000.102*
H11B0.8438−0.18970.13850.102*
C120.86543 (12)−0.1833 (3)0.3176 (2)0.0894 (7)
H12A0.8501−0.29160.33160.107*
H12B0.8508−0.11920.38520.107*
C130.94383 (12)−0.1808 (4)0.3140 (2)0.0967 (8)
H13A0.9580−0.24790.24770.116*
H13B0.9585−0.07310.29590.116*
C140.98230 (14)−0.2337 (4)0.4256 (3)0.1093 (9)
H14A0.9668−0.16950.49270.131*
H14B0.9694−0.34300.44200.131*
C151.05973 (14)−0.2242 (4)0.4222 (3)0.1218 (11)
H15A1.0751−0.28760.35470.146*
H15B1.0726−0.11480.40640.146*
C161.09856 (17)−0.2777 (5)0.5325 (3)0.1430 (13)
H16A1.0904−0.38910.54480.215*
H16B1.0828−0.21910.60090.215*
H16C1.1477−0.25970.52320.215*
C330.52544 (11)0.4316 (2)0.1699 (2)0.0792 (6)
H33A0.54150.37070.23860.119*
H33B0.48740.37670.12960.119*
H33C0.50980.53400.19620.119*
C550.76020 (12)0.1358 (3)−0.26704 (19)0.0827 (6)
H55A0.72220.0765−0.30330.124*
H55B0.78880.0663−0.21780.124*
H55C0.78790.1812−0.32930.124*
U11U22U33U12U13U23
N0.0518 (10)0.0748 (10)0.0642 (9)−0.0007 (7)0.0016 (7)−0.0170 (8)
O30.0784 (9)0.0481 (7)0.0842 (9)0.0003 (6)0.0272 (7)−0.0118 (6)
O40.0938 (10)0.0483 (7)0.0537 (7)−0.0083 (6)0.0098 (6)0.0001 (5)
O50.0770 (9)0.0656 (8)0.0611 (7)−0.0018 (6)0.0200 (6)−0.0086 (6)
O90.0729 (9)0.0600 (8)0.0742 (8)−0.0011 (6)0.0102 (7)−0.0160 (6)
C10.0504 (10)0.0457 (8)0.0552 (9)−0.0015 (7)−0.0134 (7)−0.0021 (7)
C20.0495 (10)0.0502 (9)0.0573 (9)−0.0036 (7)0.0020 (8)−0.0012 (8)
C30.0548 (10)0.0442 (9)0.0542 (9)0.0016 (7)0.0003 (7)−0.0063 (7)
C40.0572 (10)0.0426 (8)0.0456 (8)−0.0020 (7)−0.0018 (7)−0.0009 (7)
C50.0501 (10)0.0564 (9)0.0465 (8)0.0004 (7)−0.0017 (7)−0.0027 (7)
C60.0567 (11)0.0459 (9)0.0555 (9)0.0053 (7)−0.0059 (8)−0.0087 (7)
C70.0545 (11)0.0464 (9)0.0740 (11)−0.0066 (7)−0.0105 (8)−0.0046 (8)
C80.0560 (11)0.0468 (9)0.0619 (10)−0.0064 (7)0.0044 (8)0.0031 (8)
C90.0576 (11)0.0419 (8)0.0508 (9)0.0010 (7)0.0026 (7)0.0053 (7)
C110.0564 (13)0.1206 (19)0.0779 (13)−0.0055 (12)0.0030 (10)−0.0124 (13)
C120.0622 (14)0.1089 (18)0.0967 (16)−0.0005 (12)−0.0056 (12)0.0081 (14)
C130.0641 (15)0.133 (2)0.0928 (16)0.0082 (13)−0.0021 (12)−0.0075 (15)
C140.0774 (18)0.138 (2)0.112 (2)0.0045 (16)−0.0112 (15)0.0073 (18)
C150.0728 (18)0.184 (3)0.108 (2)0.0236 (18)−0.0101 (15)−0.012 (2)
C160.104 (2)0.209 (4)0.115 (2)0.016 (2)−0.0206 (19)0.005 (2)
C330.0720 (14)0.0728 (13)0.0943 (14)−0.0026 (10)0.0296 (11)−0.0245 (12)
C550.0834 (16)0.0945 (16)0.0711 (12)0.0065 (12)0.0193 (11)−0.0207 (12)
N—C91.316 (2)C11—C121.482 (3)
N—C111.446 (2)C11—H11A0.9700
N—H100.8600C11—H11B0.9700
O3—C31.3703 (19)C12—C131.500 (3)
O3—C331.412 (2)C12—H12A0.9700
O4—C41.3653 (19)C12—H12B0.9700
O4—H40.8200C13—C141.489 (3)
O5—C51.367 (2)C13—H13A0.9700
O5—C551.412 (2)C13—H13B0.9700
O9—C91.2373 (19)C14—C151.484 (3)
C1—C61.383 (2)C14—H14A0.9700
C1—C21.386 (2)C14—H14B0.9700
C1—C71.513 (2)C15—C161.481 (4)
C2—C31.384 (2)C15—H15A0.9700
C2—H20.9300C15—H15B0.9700
C3—C41.384 (2)C16—H16A0.9600
C4—C51.392 (2)C16—H16B0.9600
C5—C61.387 (2)C16—H16C0.9600
C6—H60.9300C33—H33A0.9600
C7—C81.522 (2)C33—H33B0.9600
C7—H7A0.9700C33—H33C0.9600
C7—H7B0.9700C55—H55A0.9600
C8—C91.498 (2)C55—H55B0.9600
C8—H8A0.9700C55—H55C0.9600
C8—H8B0.9700
C9—N—C11124.19 (16)H11A—C11—H11B107.7
C9—N—H10117.9C11—C12—C13113.6 (2)
C11—N—H10117.9C11—C12—H12A108.8
C3—O3—C33117.97 (14)C13—C12—H12A108.8
C4—O4—H4109.5C11—C12—H12B108.8
C5—O5—C55117.83 (15)C13—C12—H12B108.8
C6—C1—C2119.40 (15)H12A—C12—H12B107.7
C6—C1—C7121.18 (15)C14—C13—C12116.4 (2)
C2—C1—C7119.40 (16)C14—C13—H13A108.2
C3—C2—C1120.40 (16)C12—C13—H13A108.2
C3—C2—H2119.8C14—C13—H13B108.2
C1—C2—H2119.8C12—C13—H13B108.2
O3—C3—C4114.75 (14)H13A—C13—H13B107.3
O3—C3—C2124.57 (16)C15—C14—C13115.7 (2)
C4—C3—C2120.68 (15)C15—C14—H14A108.4
O4—C4—C3122.55 (14)C13—C14—H14A108.4
O4—C4—C5118.68 (15)C15—C14—H14B108.4
C3—C4—C5118.68 (14)C13—C14—H14B108.4
O5—C5—C6124.80 (15)H14A—C14—H14B107.4
O5—C5—C4114.47 (14)C16—C15—C14116.1 (3)
C6—C5—C4120.73 (16)C16—C15—H15A108.3
C1—C6—C5120.10 (15)C14—C15—H15A108.3
C1—C6—H6119.9C16—C15—H15B108.3
C5—C6—H6119.9C14—C15—H15B108.3
C1—C7—C8112.70 (13)H15A—C15—H15B107.4
C1—C7—H7A109.1C15—C16—H16A109.5
C8—C7—H7A109.1C15—C16—H16B109.5
C1—C7—H7B109.1H16A—C16—H16B109.5
C8—C7—H7B109.1C15—C16—H16C109.5
H7A—C7—H7B107.8H16A—C16—H16C109.5
C9—C8—C7112.03 (14)H16B—C16—H16C109.5
C9—C8—H8A109.2O3—C33—H33A109.5
C7—C8—H8A109.2O3—C33—H33B109.5
C9—C8—H8B109.2H33A—C33—H33B109.5
C7—C8—H8B109.2O3—C33—H33C109.5
H8A—C8—H8B107.9H33A—C33—H33C109.5
O9—C9—N121.86 (16)H33B—C33—H33C109.5
O9—C9—C8121.18 (15)O5—C55—H55A109.5
N—C9—C8116.96 (15)O5—C55—H55B109.5
N—C11—C12113.90 (19)H55A—C55—H55B109.5
N—C11—H11A108.8O5—C55—H55C109.5
C12—C11—H11A108.8H55A—C55—H55C109.5
N—C11—H11B108.8H55B—C55—H55C109.5
C12—C11—H11B108.8
C6—C1—C2—C3−0.4 (2)C2—C1—C6—C50.4 (2)
C7—C1—C2—C3177.97 (15)C7—C1—C6—C5−177.97 (14)
C33—O3—C3—C4173.79 (16)O5—C5—C6—C1−179.81 (14)
C33—O3—C3—C2−6.2 (3)C4—C5—C6—C10.2 (2)
C1—C2—C3—O3179.82 (15)C6—C1—C7—C899.72 (18)
C1—C2—C3—C4−0.2 (2)C2—C1—C7—C8−78.67 (19)
O3—C3—C4—O4−2.5 (2)C1—C7—C8—C9−67.73 (19)
C2—C3—C4—O4177.49 (14)C11—N—C9—O90.6 (3)
O3—C3—C4—C5−179.18 (14)C11—N—C9—C8−179.38 (17)
C2—C3—C4—C50.8 (2)C7—C8—C9—O9−60.08 (19)
C55—O5—C5—C66.1 (2)C7—C8—C9—N119.90 (16)
C55—O5—C5—C4−173.98 (16)C9—N—C11—C12−115.0 (2)
O4—C4—C5—O52.4 (2)N—C11—C12—C13−177.8 (2)
C3—C4—C5—O5179.19 (14)C11—C12—C13—C14177.6 (2)
O4—C4—C5—C6−177.66 (15)C12—C13—C14—C15−177.6 (3)
C3—C4—C5—C6−0.8 (2)C13—C14—C15—C16−179.6 (3)
D—H···AD—HH···AD···AD—H···A
N—H10···O4i0.862.162.9655 (19)155
N—H10···O5i0.862.553.244 (2)138
O4—H4···O9ii0.821.842.6216 (17)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H10⋯O4i0.862.162.9655 (19)155
N—H10⋯O5i0.862.553.244 (2)138
O4—H4⋯O9ii0.821.842.6216 (17)158

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Anticancer activity of phenolic acids of natural or synthetic origin: a structure-activity study.

Authors:  Catarina A Gomes; Teresa Girão da Cruz; José L Andrade; Nuno Milhazes; Fernanda Borges; M Paula M Marques
Journal:  J Med Chem       Date:  2003-12-04       Impact factor: 7.446

Review 2.  Bioavailability challenges associated with development of anti-cancer phenolics.

Authors:  Song Gao; Ming Hu
Journal:  Mini Rev Med Chem       Date:  2010-06       Impact factor: 3.862

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Lipophilic phenolic antioxidants: correlation between antioxidant profile, partition coefficients and redox properties.

Authors:  Fernanda M F Roleira; Christophe Siquet; Elizabeta Orrù; E Manuela Garrido; Jorge Garrido; Nuno Milhazes; Gianni Podda; Fátima Paiva-Martins; Salette Reis; Rui A Carvalho; Elisiário J Tavares da Silva; Fernanda Borges
Journal:  Bioorg Med Chem       Date:  2010-07-01       Impact factor: 3.641

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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