Literature DB >> 22719373

(2,3-Di-2-pyridyl-pyrazine-κ(2)N(2),N(3))diiodidoplatinum(II).

Kwang Ha1.   

Abstract

The Pt(II) ion in the title complex, [PtI(2)(C(14)H(10)N(4))], exists in a distorted square-planar environment defined by the two pyridine N atoms of the chelating 2,3-di-2-pyridyl-pyrazine ligand and two iodide anions. The pyridine rings are inclined to the least-squares plane of the PtI(2)N(2) unit [maximum deviation = 0.070 (3) Å] at 66.1 (2) and 65.9 (2)°; the pyrazine ring is perpendicular to this plane [dihedral angle = 89.7 (2)°]. Two inter-molecular C-H⋯I hydrogen bonds, both involving the same I atom as hydrogen-bond acceptor, generate a layer structure extending parallel to (001). Mol-ecules are stacked in columns along the a axis. Along the b axis, successive mol-ecules stack in opposite directions.

Entities:  

Year:  2012        PMID: 22719373      PMCID: PMC3379175          DOI: 10.1107/S1600536812023501

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For [PtBr2(dpp)] and [PdI2(dpp)] (dpp = 2,3-di-2-pyridyl­pyrazine), see: Ha (2011a ▶,b ▶).

Experimental

Crystal data

[PtI2(C14H10N4)] M = 683.15 Monoclinic, a = 8.7600 (7) Å b = 15.4750 (12) Å c = 12.5004 (10) Å β = 102.660 (2)° V = 1653.4 (2) Å3 Z = 4 Mo Kα radiation μ = 12.22 mm−1 T = 200 K 0.26 × 0.23 × 0.19 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.551, T max = 1.000 10058 measured reflections 3215 independent reflections 2807 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.077 S = 1.07 3215 reflections 190 parameters H-atom parameters constrained Δρmax = 1.30 e Å−3 Δρmin = −1.26 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812023501/ng5273sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812023501/ng5273Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PtI2(C14H10N4)]F(000) = 1224
Mr = 683.15Dx = 2.744 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6167 reflections
a = 8.7600 (7) Åθ = 2.6–26.0°
b = 15.4750 (12) ŵ = 12.22 mm1
c = 12.5004 (10) ÅT = 200 K
β = 102.660 (2)°Block, yellow
V = 1653.4 (2) Å30.26 × 0.23 × 0.19 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3215 independent reflections
Radiation source: fine-focus sealed tube2807 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
φ and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.551, Tmax = 1.000k = −19→13
10058 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0341P)2 + 4.3824P] where P = (Fo2 + 2Fc2)/3
3215 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 1.30 e Å3
0 restraintsΔρmin = −1.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.47513 (3)0.062468 (17)0.68112 (2)0.02787 (10)
I10.62382 (6)−0.08242 (3)0.69367 (4)0.04126 (14)
I20.73035 (6)0.15223 (4)0.73544 (4)0.04772 (16)
N10.1840 (7)0.0062 (4)0.9040 (5)0.0373 (14)
N20.2411 (8)0.1831 (4)0.9096 (5)0.0425 (15)
N30.2701 (6)−0.0044 (3)0.6444 (4)0.0280 (12)
N40.3445 (7)0.1720 (4)0.6578 (5)0.0369 (14)
C10.2034 (8)0.0481 (4)0.8137 (6)0.0308 (15)
C20.2337 (8)0.1370 (4)0.8164 (6)0.0331 (15)
C30.2248 (10)0.1399 (5)0.9984 (6)0.047 (2)
H30.23300.17031.06540.056*
C40.1965 (10)0.0532 (5)0.9959 (6)0.047 (2)
H40.18530.02511.06130.057*
C50.1726 (7)−0.0069 (4)0.7139 (5)0.0286 (14)
C60.0443 (8)−0.0605 (5)0.6955 (6)0.0375 (17)
H6−0.0224−0.06170.74600.045*
C70.0125 (8)−0.1121 (5)0.6041 (7)0.0444 (19)
H7−0.0752−0.14980.59130.053*
C80.1095 (8)−0.1086 (5)0.5310 (6)0.0383 (17)
H80.0890−0.14340.46680.046*
C90.2355 (9)−0.0544 (5)0.5521 (6)0.0343 (16)
H90.3012−0.05130.50110.041*
C100.2419 (8)0.1915 (4)0.7201 (6)0.0322 (15)
C110.1480 (9)0.2633 (5)0.6997 (7)0.0432 (19)
H110.07690.27610.74500.052*
C120.1573 (10)0.3169 (5)0.6127 (7)0.052 (2)
H120.09250.36660.59700.062*
C130.2640 (11)0.2964 (5)0.5491 (6)0.053 (2)
H130.27350.33220.48910.064*
C140.3539 (10)0.2253 (5)0.5731 (6)0.0449 (19)
H140.42650.21200.52910.054*
U11U22U33U12U13U23
Pt10.03372 (16)0.02391 (16)0.02724 (15)−0.00575 (11)0.00941 (11)−0.00250 (10)
I10.0362 (3)0.0397 (3)0.0496 (3)0.0012 (2)0.0132 (2)0.0003 (2)
I20.0505 (3)0.0517 (3)0.0432 (3)−0.0247 (3)0.0152 (2)−0.0113 (2)
N10.046 (3)0.029 (3)0.040 (3)−0.003 (3)0.016 (3)0.000 (3)
N20.061 (4)0.030 (3)0.037 (3)0.000 (3)0.012 (3)−0.008 (3)
N30.035 (3)0.019 (3)0.030 (3)0.000 (2)0.006 (2)−0.001 (2)
N40.055 (4)0.020 (3)0.034 (3)−0.004 (3)0.005 (3)−0.004 (2)
C10.031 (4)0.026 (4)0.035 (4)0.002 (3)0.007 (3)−0.005 (3)
C20.039 (4)0.024 (4)0.034 (4)−0.003 (3)0.002 (3)−0.006 (3)
C30.065 (5)0.039 (5)0.036 (4)−0.005 (4)0.012 (4)−0.010 (4)
C40.066 (5)0.045 (5)0.034 (4)−0.003 (4)0.019 (4)−0.002 (4)
C50.031 (3)0.021 (3)0.033 (3)0.002 (3)0.006 (3)−0.001 (3)
C60.032 (4)0.039 (4)0.042 (4)−0.005 (3)0.011 (3)−0.006 (3)
C70.030 (4)0.044 (5)0.058 (5)−0.008 (4)0.007 (3)−0.006 (4)
C80.042 (4)0.028 (4)0.041 (4)−0.001 (3)0.002 (3)−0.012 (3)
C90.043 (4)0.032 (4)0.025 (3)0.001 (3)0.002 (3)−0.006 (3)
C100.041 (4)0.019 (3)0.034 (4)−0.004 (3)0.005 (3)−0.002 (3)
C110.046 (4)0.025 (4)0.055 (5)0.005 (3)0.004 (4)0.000 (3)
C120.060 (5)0.025 (4)0.060 (5)0.004 (4)−0.007 (4)0.006 (4)
C130.090 (7)0.029 (4)0.035 (4)−0.008 (5)0.002 (4)0.002 (4)
C140.071 (5)0.032 (4)0.032 (4)−0.007 (4)0.012 (4)0.003 (3)
Pt1—N42.030 (6)C4—H40.9500
Pt1—N32.036 (5)C5—C61.375 (10)
Pt1—I12.5805 (6)C6—C71.372 (11)
Pt1—I22.5930 (6)C6—H60.9500
N1—C41.343 (10)C7—C81.379 (11)
N1—C11.345 (9)C7—H70.9500
N2—C31.329 (10)C8—C91.366 (10)
N2—C21.355 (9)C8—H80.9500
N3—C51.346 (8)C9—H90.9500
N3—C91.366 (8)C10—C111.373 (10)
N4—C101.346 (9)C11—C121.384 (11)
N4—C141.360 (9)C11—H110.9500
C1—C21.400 (10)C12—C131.391 (13)
C1—C51.486 (9)C12—H120.9500
C2—C101.485 (10)C13—C141.347 (12)
C3—C41.364 (11)C13—H130.9500
C3—H30.9500C14—H140.9500
N4—Pt1—N387.2 (2)C6—C5—C1118.5 (6)
N4—Pt1—I1174.46 (16)C7—C6—C5120.0 (7)
N3—Pt1—I188.89 (15)C7—C6—H6120.0
N4—Pt1—I290.97 (17)C5—C6—H6120.0
N3—Pt1—I2176.99 (15)C6—C7—C8119.2 (7)
I1—Pt1—I293.14 (2)C6—C7—H7120.4
C4—N1—C1117.0 (6)C8—C7—H7120.4
C3—N2—C2117.3 (6)C9—C8—C7119.0 (7)
C5—N3—C9118.3 (6)C9—C8—H8120.5
C5—N3—Pt1121.5 (4)C7—C8—H8120.5
C9—N3—Pt1120.0 (5)N3—C9—C8122.1 (7)
C10—N4—C14118.5 (6)N3—C9—H9118.9
C10—N4—Pt1122.1 (5)C8—C9—H9118.9
C14—N4—Pt1119.4 (5)N4—C10—C11121.5 (7)
N1—C1—C2120.8 (6)N4—C10—C2119.9 (6)
N1—C1—C5113.3 (6)C11—C10—C2118.5 (7)
C2—C1—C5125.6 (6)C10—C11—C12119.7 (8)
N2—C2—C1120.7 (7)C10—C11—H11120.2
N2—C2—C10113.4 (6)C12—C11—H11120.2
C1—C2—C10125.5 (6)C11—C12—C13118.3 (8)
N2—C3—C4121.9 (7)C11—C12—H12120.8
N2—C3—H3119.1C13—C12—H12120.8
C4—C3—H3119.1C14—C13—C12119.5 (8)
N1—C4—C3122.2 (7)C14—C13—H13120.2
N1—C4—H4118.9C12—C13—H13120.2
C3—C4—H4118.9C13—C14—N4122.5 (8)
N3—C5—C6121.4 (6)C13—C14—H14118.8
N3—C5—C1120.1 (6)N4—C14—H14118.8
N4—Pt1—N3—C5−71.2 (5)N1—C1—C5—C643.3 (9)
I1—Pt1—N3—C5112.7 (5)C2—C1—C5—C6−130.3 (8)
N4—Pt1—N3—C9114.8 (5)N3—C5—C6—C7−0.7 (11)
I1—Pt1—N3—C9−61.4 (5)C1—C5—C6—C7180.0 (7)
N3—Pt1—N4—C1062.0 (5)C5—C6—C7—C8−0.8 (12)
I2—Pt1—N4—C10−115.6 (5)C6—C7—C8—C90.6 (12)
N3—Pt1—N4—C14−114.3 (6)C5—N3—C9—C8−2.5 (10)
I2—Pt1—N4—C1468.1 (5)Pt1—N3—C9—C8171.7 (5)
C4—N1—C1—C2−0.5 (10)C7—C8—C9—N31.1 (11)
C4—N1—C1—C5−174.5 (6)C14—N4—C10—C110.0 (10)
C3—N2—C2—C12.6 (11)Pt1—N4—C10—C11−176.3 (5)
C3—N2—C2—C10175.9 (7)C14—N4—C10—C2−177.2 (6)
N1—C1—C2—N2−1.3 (11)Pt1—N4—C10—C26.5 (8)
C5—C1—C2—N2171.8 (7)N2—C2—C10—N4129.3 (7)
N1—C1—C2—C10−173.8 (7)C1—C2—C10—N4−57.7 (10)
C5—C1—C2—C10−0.6 (11)N2—C2—C10—C11−47.9 (9)
C2—N2—C3—C4−2.1 (12)C1—C2—C10—C11125.1 (8)
C1—N1—C4—C31.1 (12)N4—C10—C11—C120.5 (11)
N2—C3—C4—N10.2 (14)C2—C10—C11—C12177.7 (7)
C9—N3—C5—C62.3 (9)C10—C11—C12—C13−0.6 (12)
Pt1—N3—C5—C6−171.8 (5)C11—C12—C13—C140.3 (12)
C9—N3—C5—C1−178.3 (6)C12—C13—C14—N40.1 (12)
Pt1—N3—C5—C17.5 (8)C10—N4—C14—C13−0.3 (11)
N1—C1—C5—N3−136.1 (6)Pt1—N4—C14—C13176.1 (6)
C2—C1—C5—N350.3 (10)
D—H···AD—HH···AD···AD—H···A
C6—H6···I1i0.953.043.694 (7)127
C11—H11···I1ii0.953.013.813 (8)143
Pt1—N42.030 (6)
Pt1—N32.036 (5)
Pt1—I12.5805 (6)
Pt1—I22.5930 (6)
N4—Pt1—N387.2 (2)
I1—Pt1—I293.14 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯I1i0.953.043.694 (7)127
C11—H11⋯I1ii0.953.013.813 (8)143

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (2,3-Di-2-pyridyl-pyrazine-κN,N)diiodidopalladium(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  Dibromido(2,3-di-2-pyridyl-pyrazine-κN,N)platinum(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.