Literature DB >> 22219851

(2,3-Di-2-pyridyl-pyrazine-κN,N)diiodidopalladium(II).

Kwang Ha1.   

Abstract

The Pd(II) ion in the title complex, [PdI(2)(C(14)H(10)N(4))], is four-coordinated in a slightly distorted square-planar environment by the two pyridine N atoms of the chelating 2,3-di-2-pyridyl-pyrazine (dpp) ligand and two iodide anions. In the crystal, the pyridine rings are considerably inclined to the least-squares plane of the PdI(2)N(2) unit [maximum deviation = 0.090 (2) Å], making dihedral angles of 65.0 (2) and 66.6 (2)°. The pyrazine ring is perpendicular to the unit plane, with a dihedral angle of 89.9 (2)°. The complex mol-ecules are connected by C-H⋯I hydrogen bonds, forming a helical chain along the b axis.

Entities:  

Year:  2011        PMID: 22219851      PMCID: PMC3247546          DOI: 10.1107/S1600536811044023

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of the yellow form of [PtBr2(dpp)] which is isotypic to the title complex, see: Ha (2011 ▶).

Experimental

Crystal data

[PdI2(C14H10N4)] M = 594.46 Monoclinic, a = 8.7936 (12) Å b = 15.528 (2) Å c = 12.3351 (17) Å β = 102.118 (3)° V = 1646.8 (4) Å3 Z = 4 Mo Kα radiation μ = 4.87 mm−1 T = 200 K 0.42 × 0.31 × 0.29 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.183, T max = 0.243 10659 measured reflections 3513 independent reflections 2968 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.103 S = 1.05 3513 reflections 190 parameters H-atom parameters constrained Δρmax = 1.28 e Å−3 Δρmin = −1.42 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044023/is2795sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044023/is2795Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PdI2(C14H10N4)]F(000) = 1096
Mr = 594.46Dx = 2.398 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7148 reflections
a = 8.7936 (12) Åθ = 2.4–27.0°
b = 15.528 (2) ŵ = 4.87 mm1
c = 12.3351 (17) ÅT = 200 K
β = 102.118 (3)°Block, red-brown
V = 1646.8 (4) Å30.42 × 0.31 × 0.29 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3513 independent reflections
Radiation source: fine-focus sealed tube2968 reflections with I > 2σ(I)
graphiteRint = 0.022
φ and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −11→10
Tmin = 0.183, Tmax = 0.243k = −19→19
10659 measured reflectionsl = −11→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0477P)2 + 7.4036P] where P = (Fo2 + 2Fc2)/3
3513 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 1.28 e Å3
0 restraintsΔρmin = −1.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pd10.46673 (5)0.06358 (3)0.67952 (3)0.03147 (13)
I10.61860 (5)−0.07875 (3)0.68473 (4)0.04827 (15)
I20.71972 (6)0.15314 (3)0.73389 (4)0.05207 (16)
N10.1852 (6)0.0054 (3)0.9114 (4)0.0419 (12)
N20.2351 (7)0.1813 (4)0.9159 (5)0.0473 (13)
N30.2628 (5)−0.0048 (3)0.6446 (4)0.0314 (10)
N40.3330 (6)0.1733 (3)0.6587 (4)0.0375 (11)
C10.2007 (6)0.0473 (4)0.8187 (5)0.0332 (12)
C20.2265 (7)0.1360 (4)0.8211 (5)0.0347 (12)
C30.2229 (9)0.1385 (5)1.0064 (6)0.0516 (17)
H30.23040.16901.07400.062*
C40.1993 (9)0.0498 (4)1.0047 (6)0.0495 (16)
H40.19320.02071.07140.059*
C50.1683 (6)−0.0075 (3)0.7174 (5)0.0309 (11)
C60.0425 (7)−0.0623 (4)0.7030 (6)0.0430 (15)
H6−0.0216−0.06420.75610.052*
C70.0103 (7)−0.1154 (4)0.6092 (6)0.0485 (16)
H7−0.0753−0.15410.59810.058*
C80.1045 (7)−0.1106 (4)0.5334 (5)0.0418 (14)
H80.0844−0.14520.46840.050*
C90.2272 (7)−0.0552 (4)0.5534 (5)0.0385 (13)
H90.2913−0.05170.50040.046*
C100.2329 (7)0.1913 (4)0.7239 (5)0.0374 (13)
C110.1398 (8)0.2639 (4)0.7055 (6)0.0470 (16)
H110.07110.27680.75330.056*
C120.1467 (10)0.3171 (4)0.6187 (6)0.0558 (19)
H120.08200.36650.60500.067*
C130.2478 (10)0.2984 (4)0.5515 (6)0.0554 (19)
H130.25430.33480.49070.067*
C140.3406 (9)0.2259 (4)0.5733 (5)0.0497 (16)
H140.41130.21300.52700.060*
U11U22U33U12U13U23
Pd10.0364 (2)0.0300 (2)0.0295 (2)−0.00616 (17)0.01056 (17)−0.00251 (16)
I10.0419 (3)0.0503 (3)0.0548 (3)0.00162 (18)0.01512 (19)0.00031 (19)
I20.0562 (3)0.0592 (3)0.0431 (3)−0.0268 (2)0.0154 (2)−0.0105 (2)
N10.053 (3)0.037 (3)0.036 (3)−0.003 (2)0.013 (2)−0.002 (2)
N20.062 (4)0.039 (3)0.041 (3)0.002 (3)0.012 (3)−0.011 (2)
N30.034 (2)0.026 (2)0.034 (2)−0.0009 (18)0.0070 (19)0.0001 (19)
N40.054 (3)0.027 (2)0.031 (2)−0.004 (2)0.007 (2)−0.0016 (19)
C10.032 (3)0.034 (3)0.034 (3)0.001 (2)0.007 (2)−0.006 (2)
C20.038 (3)0.030 (3)0.037 (3)−0.001 (2)0.010 (2)−0.004 (2)
C30.072 (5)0.048 (4)0.038 (4)−0.002 (3)0.018 (3)−0.009 (3)
C40.068 (5)0.044 (4)0.040 (4)−0.001 (3)0.019 (3)−0.004 (3)
C50.034 (3)0.026 (3)0.034 (3)0.001 (2)0.010 (2)−0.003 (2)
C60.034 (3)0.055 (4)0.044 (4)−0.009 (3)0.017 (3)−0.009 (3)
C70.037 (3)0.046 (4)0.062 (4)−0.012 (3)0.008 (3)−0.014 (3)
C80.047 (4)0.038 (3)0.039 (3)−0.005 (3)0.004 (3)−0.014 (3)
C90.048 (3)0.037 (3)0.031 (3)0.000 (3)0.008 (2)−0.007 (2)
C100.050 (3)0.026 (3)0.033 (3)−0.004 (2)−0.001 (3)−0.003 (2)
C110.053 (4)0.033 (3)0.052 (4)0.003 (3)0.003 (3)−0.004 (3)
C120.069 (5)0.029 (3)0.060 (4)0.000 (3)−0.008 (4)0.004 (3)
C130.092 (6)0.032 (3)0.036 (3)−0.007 (3)0.001 (4)0.004 (3)
C140.071 (5)0.041 (3)0.036 (3)−0.011 (3)0.008 (3)−0.001 (3)
Pd1—N32.050 (5)C4—H40.9500
Pd1—N42.056 (5)C5—C61.378 (8)
Pd1—I12.5761 (7)C6—C71.400 (9)
Pd1—I22.5898 (6)C6—H60.9500
N1—C41.326 (8)C7—C81.375 (10)
N1—C11.347 (8)C7—H70.9500
N2—C31.321 (9)C8—C91.362 (9)
N2—C21.353 (8)C8—H80.9500
N3—C51.346 (7)C9—H90.9500
N3—C91.352 (7)C10—C111.384 (9)
N4—C101.340 (8)C11—C121.363 (10)
N4—C141.346 (8)C11—H110.9500
C1—C21.395 (8)C12—C131.367 (12)
C1—C51.489 (7)C12—H120.9500
C2—C101.486 (8)C13—C141.383 (11)
C3—C41.393 (10)C13—H130.9500
C3—H30.9500C14—H140.9500
N3—Pd1—N487.17 (19)C6—C5—C1117.9 (5)
N3—Pd1—I189.26 (13)C5—C6—C7119.2 (6)
N4—Pd1—I1173.87 (13)C5—C6—H6120.4
N3—Pd1—I2176.70 (13)C7—C6—H6120.4
N4—Pd1—I291.43 (14)C8—C7—C6118.9 (6)
I1—Pd1—I292.38 (2)C8—C7—H7120.5
C4—N1—C1118.5 (5)C6—C7—H7120.5
C3—N2—C2118.0 (6)C9—C8—C7118.6 (6)
C5—N3—C9118.0 (5)C9—C8—H8120.7
C5—N3—Pd1120.7 (4)C7—C8—H8120.7
C9—N3—Pd1120.9 (4)N3—C9—C8123.6 (6)
C10—N4—C14119.3 (6)N3—C9—H9118.2
C10—N4—Pd1121.9 (4)C8—C9—H9118.2
C14—N4—Pd1118.7 (5)N4—C10—C11120.8 (6)
N1—C1—C2120.3 (5)N4—C10—C2120.3 (5)
N1—C1—C5113.6 (5)C11—C10—C2118.9 (6)
C2—C1—C5125.7 (5)C12—C11—C10120.0 (7)
N2—C2—C1120.7 (6)C12—C11—H11120.0
N2—C2—C10113.1 (5)C10—C11—H11120.0
C1—C2—C10126.0 (5)C11—C12—C13119.3 (7)
N2—C3—C4121.5 (6)C11—C12—H12120.4
N2—C3—H3119.2C13—C12—H12120.4
C4—C3—H3119.2C12—C13—C14119.2 (7)
N1—C4—C3120.9 (6)C12—C13—H13120.4
N1—C4—H4119.5C14—C13—H13120.4
C3—C4—H4119.5N4—C14—C13121.4 (7)
N3—C5—C6121.6 (5)N4—C14—H14119.3
N3—C5—C1120.4 (5)C13—C14—H14119.3
N4—Pd1—N3—C5−70.8 (4)N1—C1—C5—C642.3 (7)
I1—Pd1—N3—C5114.2 (4)C2—C1—C5—C6−130.1 (7)
N4—Pd1—N3—C9116.0 (4)N3—C5—C6—C7−1.3 (10)
I1—Pd1—N3—C9−59.1 (4)C1—C5—C6—C7−179.2 (6)
N3—Pd1—N4—C1062.2 (5)C5—C6—C7—C8−0.6 (11)
I2—Pd1—N4—C10−114.8 (4)C6—C7—C8—C91.0 (10)
N3—Pd1—N4—C14−114.1 (5)C5—N3—C9—C8−2.4 (9)
I2—Pd1—N4—C1468.9 (5)Pd1—N3—C9—C8171.0 (5)
C4—N1—C1—C2−1.8 (9)C7—C8—C9—N30.6 (10)
C4—N1—C1—C5−174.7 (6)C14—N4—C10—C11−1.2 (9)
C3—N2—C2—C12.0 (10)Pd1—N4—C10—C11−177.5 (4)
C3—N2—C2—C10176.8 (6)C14—N4—C10—C2−177.7 (5)
N1—C1—C2—N2−0.6 (9)Pd1—N4—C10—C26.0 (7)
C5—C1—C2—N2171.4 (6)N2—C2—C10—N4129.4 (6)
N1—C1—C2—C10−174.7 (6)C1—C2—C10—N4−56.1 (8)
C5—C1—C2—C10−2.7 (10)N2—C2—C10—C11−47.2 (8)
C2—N2—C3—C4−1.1 (11)C1—C2—C10—C11127.3 (7)
C1—N1—C4—C32.7 (10)N4—C10—C11—C121.6 (10)
N2—C3—C4—N1−1.3 (12)C2—C10—C11—C12178.1 (6)
C9—N3—C5—C62.8 (8)C10—C11—C12—C13−1.0 (10)
Pd1—N3—C5—C6−170.7 (5)C11—C12—C13—C140.1 (11)
C9—N3—C5—C1−179.4 (5)C10—N4—C14—C130.3 (9)
Pd1—N3—C5—C17.2 (7)Pd1—N4—C14—C13176.7 (5)
N1—C1—C5—N3−135.7 (6)C12—C13—C14—N40.3 (11)
C2—C1—C5—N351.9 (8)
D—H···AD—HH···AD···AD—H···A
C11—H11···I1i0.952.993.776 (7)141.
Table 1

Selected bond lengths (Å)

Pd1—N32.050 (5)
Pd1—N42.056 (5)
Pd1—I12.5761 (7)
Pd1—I22.5898 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯I1i0.952.993.776 (7)141

Symmetry code: (i) .

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