| Literature DB >> 22219851 |
Kwang Ha1.
Abstract
The Pd(II) ion in the title complex, [PdI(2)(C(14)H(10)N(4))], is four-coordinated in a slightly distorted square-planar environment by the two pyridine N atoms of the chelating 2,3-di-2-pyridyl-pyrazine (dpp) ligand and two iodide anions. In the crystal, the pyridine rings are considerably inclined to the least-squares plane of the PdI(2)N(2) unit [maximum deviation = 0.090 (2) Å], making dihedral angles of 65.0 (2) and 66.6 (2)°. The pyrazine ring is perpendicular to the unit plane, with a dihedral angle of 89.9 (2)°. The complex mol-ecules are connected by C-H⋯I hydrogen bonds, forming a helical chain along the b axis.Entities:
Year: 2011 PMID: 22219851 PMCID: PMC3247546 DOI: 10.1107/S1600536811044023
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdI2(C14H10N4)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7148 reflections |
| θ = 2.4–27.0° | |
| µ = 4.87 mm−1 | |
| β = 102.118 (3)° | Block, red-brown |
| 0.42 × 0.31 × 0.29 mm | |
| Bruker SMART 1000 CCD diffractometer | 3513 independent reflections |
| Radiation source: fine-focus sealed tube | 2968 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 10659 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3513 reflections | (Δ/σ)max = 0.001 |
| 190 parameters | Δρmax = 1.28 e Å−3 |
| 0 restraints | Δρmin = −1.42 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Pd1 | 0.46673 (5) | 0.06358 (3) | 0.67952 (3) | 0.03147 (13) | |
| I1 | 0.61860 (5) | −0.07875 (3) | 0.68473 (4) | 0.04827 (15) | |
| I2 | 0.71972 (6) | 0.15314 (3) | 0.73389 (4) | 0.05207 (16) | |
| N1 | 0.1852 (6) | 0.0054 (3) | 0.9114 (4) | 0.0419 (12) | |
| N2 | 0.2351 (7) | 0.1813 (4) | 0.9159 (5) | 0.0473 (13) | |
| N3 | 0.2628 (5) | −0.0048 (3) | 0.6446 (4) | 0.0314 (10) | |
| N4 | 0.3330 (6) | 0.1733 (3) | 0.6587 (4) | 0.0375 (11) | |
| C1 | 0.2007 (6) | 0.0473 (4) | 0.8187 (5) | 0.0332 (12) | |
| C2 | 0.2265 (7) | 0.1360 (4) | 0.8211 (5) | 0.0347 (12) | |
| C3 | 0.2229 (9) | 0.1385 (5) | 1.0064 (6) | 0.0516 (17) | |
| H3 | 0.2304 | 0.1690 | 1.0740 | 0.062* | |
| C4 | 0.1993 (9) | 0.0498 (4) | 1.0047 (6) | 0.0495 (16) | |
| H4 | 0.1932 | 0.0207 | 1.0714 | 0.059* | |
| C5 | 0.1683 (6) | −0.0075 (3) | 0.7174 (5) | 0.0309 (11) | |
| C6 | 0.0425 (7) | −0.0623 (4) | 0.7030 (6) | 0.0430 (15) | |
| H6 | −0.0216 | −0.0642 | 0.7561 | 0.052* | |
| C7 | 0.0103 (7) | −0.1154 (4) | 0.6092 (6) | 0.0485 (16) | |
| H7 | −0.0753 | −0.1541 | 0.5981 | 0.058* | |
| C8 | 0.1045 (7) | −0.1106 (4) | 0.5334 (5) | 0.0418 (14) | |
| H8 | 0.0844 | −0.1452 | 0.4684 | 0.050* | |
| C9 | 0.2272 (7) | −0.0552 (4) | 0.5534 (5) | 0.0385 (13) | |
| H9 | 0.2913 | −0.0517 | 0.5004 | 0.046* | |
| C10 | 0.2329 (7) | 0.1913 (4) | 0.7239 (5) | 0.0374 (13) | |
| C11 | 0.1398 (8) | 0.2639 (4) | 0.7055 (6) | 0.0470 (16) | |
| H11 | 0.0711 | 0.2768 | 0.7533 | 0.056* | |
| C12 | 0.1467 (10) | 0.3171 (4) | 0.6187 (6) | 0.0558 (19) | |
| H12 | 0.0820 | 0.3665 | 0.6050 | 0.067* | |
| C13 | 0.2478 (10) | 0.2984 (4) | 0.5515 (6) | 0.0554 (19) | |
| H13 | 0.2543 | 0.3348 | 0.4907 | 0.067* | |
| C14 | 0.3406 (9) | 0.2259 (4) | 0.5733 (5) | 0.0497 (16) | |
| H14 | 0.4113 | 0.2130 | 0.5270 | 0.060* |
| Pd1 | 0.0364 (2) | 0.0300 (2) | 0.0295 (2) | −0.00616 (17) | 0.01056 (17) | −0.00251 (16) |
| I1 | 0.0419 (3) | 0.0503 (3) | 0.0548 (3) | 0.00162 (18) | 0.01512 (19) | 0.00031 (19) |
| I2 | 0.0562 (3) | 0.0592 (3) | 0.0431 (3) | −0.0268 (2) | 0.0154 (2) | −0.0105 (2) |
| N1 | 0.053 (3) | 0.037 (3) | 0.036 (3) | −0.003 (2) | 0.013 (2) | −0.002 (2) |
| N2 | 0.062 (4) | 0.039 (3) | 0.041 (3) | 0.002 (3) | 0.012 (3) | −0.011 (2) |
| N3 | 0.034 (2) | 0.026 (2) | 0.034 (2) | −0.0009 (18) | 0.0070 (19) | 0.0001 (19) |
| N4 | 0.054 (3) | 0.027 (2) | 0.031 (2) | −0.004 (2) | 0.007 (2) | −0.0016 (19) |
| C1 | 0.032 (3) | 0.034 (3) | 0.034 (3) | 0.001 (2) | 0.007 (2) | −0.006 (2) |
| C2 | 0.038 (3) | 0.030 (3) | 0.037 (3) | −0.001 (2) | 0.010 (2) | −0.004 (2) |
| C3 | 0.072 (5) | 0.048 (4) | 0.038 (4) | −0.002 (3) | 0.018 (3) | −0.009 (3) |
| C4 | 0.068 (5) | 0.044 (4) | 0.040 (4) | −0.001 (3) | 0.019 (3) | −0.004 (3) |
| C5 | 0.034 (3) | 0.026 (3) | 0.034 (3) | 0.001 (2) | 0.010 (2) | −0.003 (2) |
| C6 | 0.034 (3) | 0.055 (4) | 0.044 (4) | −0.009 (3) | 0.017 (3) | −0.009 (3) |
| C7 | 0.037 (3) | 0.046 (4) | 0.062 (4) | −0.012 (3) | 0.008 (3) | −0.014 (3) |
| C8 | 0.047 (4) | 0.038 (3) | 0.039 (3) | −0.005 (3) | 0.004 (3) | −0.014 (3) |
| C9 | 0.048 (3) | 0.037 (3) | 0.031 (3) | 0.000 (3) | 0.008 (2) | −0.007 (2) |
| C10 | 0.050 (3) | 0.026 (3) | 0.033 (3) | −0.004 (2) | −0.001 (3) | −0.003 (2) |
| C11 | 0.053 (4) | 0.033 (3) | 0.052 (4) | 0.003 (3) | 0.003 (3) | −0.004 (3) |
| C12 | 0.069 (5) | 0.029 (3) | 0.060 (4) | 0.000 (3) | −0.008 (4) | 0.004 (3) |
| C13 | 0.092 (6) | 0.032 (3) | 0.036 (3) | −0.007 (3) | 0.001 (4) | 0.004 (3) |
| C14 | 0.071 (5) | 0.041 (3) | 0.036 (3) | −0.011 (3) | 0.008 (3) | −0.001 (3) |
| Pd1—N3 | 2.050 (5) | C4—H4 | 0.9500 |
| Pd1—N4 | 2.056 (5) | C5—C6 | 1.378 (8) |
| Pd1—I1 | 2.5761 (7) | C6—C7 | 1.400 (9) |
| Pd1—I2 | 2.5898 (6) | C6—H6 | 0.9500 |
| N1—C4 | 1.326 (8) | C7—C8 | 1.375 (10) |
| N1—C1 | 1.347 (8) | C7—H7 | 0.9500 |
| N2—C3 | 1.321 (9) | C8—C9 | 1.362 (9) |
| N2—C2 | 1.353 (8) | C8—H8 | 0.9500 |
| N3—C5 | 1.346 (7) | C9—H9 | 0.9500 |
| N3—C9 | 1.352 (7) | C10—C11 | 1.384 (9) |
| N4—C10 | 1.340 (8) | C11—C12 | 1.363 (10) |
| N4—C14 | 1.346 (8) | C11—H11 | 0.9500 |
| C1—C2 | 1.395 (8) | C12—C13 | 1.367 (12) |
| C1—C5 | 1.489 (7) | C12—H12 | 0.9500 |
| C2—C10 | 1.486 (8) | C13—C14 | 1.383 (11) |
| C3—C4 | 1.393 (10) | C13—H13 | 0.9500 |
| C3—H3 | 0.9500 | C14—H14 | 0.9500 |
| N3—Pd1—N4 | 87.17 (19) | C6—C5—C1 | 117.9 (5) |
| N3—Pd1—I1 | 89.26 (13) | C5—C6—C7 | 119.2 (6) |
| N4—Pd1—I1 | 173.87 (13) | C5—C6—H6 | 120.4 |
| N3—Pd1—I2 | 176.70 (13) | C7—C6—H6 | 120.4 |
| N4—Pd1—I2 | 91.43 (14) | C8—C7—C6 | 118.9 (6) |
| I1—Pd1—I2 | 92.38 (2) | C8—C7—H7 | 120.5 |
| C4—N1—C1 | 118.5 (5) | C6—C7—H7 | 120.5 |
| C3—N2—C2 | 118.0 (6) | C9—C8—C7 | 118.6 (6) |
| C5—N3—C9 | 118.0 (5) | C9—C8—H8 | 120.7 |
| C5—N3—Pd1 | 120.7 (4) | C7—C8—H8 | 120.7 |
| C9—N3—Pd1 | 120.9 (4) | N3—C9—C8 | 123.6 (6) |
| C10—N4—C14 | 119.3 (6) | N3—C9—H9 | 118.2 |
| C10—N4—Pd1 | 121.9 (4) | C8—C9—H9 | 118.2 |
| C14—N4—Pd1 | 118.7 (5) | N4—C10—C11 | 120.8 (6) |
| N1—C1—C2 | 120.3 (5) | N4—C10—C2 | 120.3 (5) |
| N1—C1—C5 | 113.6 (5) | C11—C10—C2 | 118.9 (6) |
| C2—C1—C5 | 125.7 (5) | C12—C11—C10 | 120.0 (7) |
| N2—C2—C1 | 120.7 (6) | C12—C11—H11 | 120.0 |
| N2—C2—C10 | 113.1 (5) | C10—C11—H11 | 120.0 |
| C1—C2—C10 | 126.0 (5) | C11—C12—C13 | 119.3 (7) |
| N2—C3—C4 | 121.5 (6) | C11—C12—H12 | 120.4 |
| N2—C3—H3 | 119.2 | C13—C12—H12 | 120.4 |
| C4—C3—H3 | 119.2 | C12—C13—C14 | 119.2 (7) |
| N1—C4—C3 | 120.9 (6) | C12—C13—H13 | 120.4 |
| N1—C4—H4 | 119.5 | C14—C13—H13 | 120.4 |
| C3—C4—H4 | 119.5 | N4—C14—C13 | 121.4 (7) |
| N3—C5—C6 | 121.6 (5) | N4—C14—H14 | 119.3 |
| N3—C5—C1 | 120.4 (5) | C13—C14—H14 | 119.3 |
| N4—Pd1—N3—C5 | −70.8 (4) | N1—C1—C5—C6 | 42.3 (7) |
| I1—Pd1—N3—C5 | 114.2 (4) | C2—C1—C5—C6 | −130.1 (7) |
| N4—Pd1—N3—C9 | 116.0 (4) | N3—C5—C6—C7 | −1.3 (10) |
| I1—Pd1—N3—C9 | −59.1 (4) | C1—C5—C6—C7 | −179.2 (6) |
| N3—Pd1—N4—C10 | 62.2 (5) | C5—C6—C7—C8 | −0.6 (11) |
| I2—Pd1—N4—C10 | −114.8 (4) | C6—C7—C8—C9 | 1.0 (10) |
| N3—Pd1—N4—C14 | −114.1 (5) | C5—N3—C9—C8 | −2.4 (9) |
| I2—Pd1—N4—C14 | 68.9 (5) | Pd1—N3—C9—C8 | 171.0 (5) |
| C4—N1—C1—C2 | −1.8 (9) | C7—C8—C9—N3 | 0.6 (10) |
| C4—N1—C1—C5 | −174.7 (6) | C14—N4—C10—C11 | −1.2 (9) |
| C3—N2—C2—C1 | 2.0 (10) | Pd1—N4—C10—C11 | −177.5 (4) |
| C3—N2—C2—C10 | 176.8 (6) | C14—N4—C10—C2 | −177.7 (5) |
| N1—C1—C2—N2 | −0.6 (9) | Pd1—N4—C10—C2 | 6.0 (7) |
| C5—C1—C2—N2 | 171.4 (6) | N2—C2—C10—N4 | 129.4 (6) |
| N1—C1—C2—C10 | −174.7 (6) | C1—C2—C10—N4 | −56.1 (8) |
| C5—C1—C2—C10 | −2.7 (10) | N2—C2—C10—C11 | −47.2 (8) |
| C2—N2—C3—C4 | −1.1 (11) | C1—C2—C10—C11 | 127.3 (7) |
| C1—N1—C4—C3 | 2.7 (10) | N4—C10—C11—C12 | 1.6 (10) |
| N2—C3—C4—N1 | −1.3 (12) | C2—C10—C11—C12 | 178.1 (6) |
| C9—N3—C5—C6 | 2.8 (8) | C10—C11—C12—C13 | −1.0 (10) |
| Pd1—N3—C5—C6 | −170.7 (5) | C11—C12—C13—C14 | 0.1 (11) |
| C9—N3—C5—C1 | −179.4 (5) | C10—N4—C14—C13 | 0.3 (9) |
| Pd1—N3—C5—C1 | 7.2 (7) | Pd1—N4—C14—C13 | 176.7 (5) |
| N1—C1—C5—N3 | −135.7 (6) | C12—C13—C14—N4 | 0.3 (11) |
| C2—C1—C5—N3 | 51.9 (8) |
| H··· | ||||
| C11—H11···I1i | 0.95 | 2.99 | 3.776 (7) | 141. |
Selected bond lengths (Å)
| Pd1—N3 | 2.050 (5) |
| Pd1—N4 | 2.056 (5) |
| Pd1—I1 | 2.5761 (7) |
| Pd1—I2 | 2.5898 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C11—H11⋯I1i | 0.95 | 2.99 | 3.776 (7) | 141 |
Symmetry code: (i) .