| Literature DB >> 22719326 |
Ye Song1, Yu-Fei Ji, Min-Yan Kang, Zhi-Liang Liu.
Abstract
In the monomeric title complex, [CoCl(2)(C(3)H(5)N(3)S)(2)], the Co(II) atom is tetra-coordinated by two chloride anions and two N atoms from two monodentate 2-amino-5-methyl-1,3,4-thia-diazole ligands, giving a slightly distorted tetra-hedral stereochemistry [bond angle range about Co = 105.16 (12)-112.50 (10)°]. In the complex, the dihedral angle between the 1,3,4-thia-diazole planes in the two ligands is 72.8 (1)°. There are two intra-molecular N-H⋯Cl inter-actions in the complex unit, while in the crystal, inter-molecular N-H⋯N and N-H⋯Cl hydrogen bonds link these units into a two-dimensional layered structure parallel to (011).Entities:
Year: 2012 PMID: 22719326 PMCID: PMC3379105 DOI: 10.1107/S1600536812020995
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [CoCl2(C3H5N3S)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5643 reflections |
| θ = 0.7–0.7° | |
| µ = 2.01 mm−1 | |
| β = 99.479 (5)° | Block, blue |
| 0.20 × 0.20 × 0.20 mm | |
| Bruker SMART APEX diffractometer | 3194 independent reflections |
| Radiation source: fine-focus sealed tube | 2125 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.192 pixels mm-1 | θmax = 28.2°, θmin = 2.0° |
| ω–2τ scans | |
| Absorption correction: multi-scan ( | |
| 8978 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3194 reflections | (Δ/σ)max < 0.001 |
| 156 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.60 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Co1 | 0.15275 (5) | 0.62934 (2) | 0.21631 (7) | 0.02936 (16) | |
| S2 | 0.52153 (11) | 0.77737 (5) | 0.39642 (15) | 0.0386 (3) | |
| S1 | 0.26820 (12) | 0.44424 (5) | −0.08418 (15) | 0.0391 (3) | |
| Cl1 | 0.06975 (11) | 0.58762 (5) | 0.46557 (14) | 0.0410 (3) | |
| Cl2 | −0.02720 (11) | 0.68410 (5) | 0.02491 (16) | 0.0457 (3) | |
| C1 | 0.3446 (4) | 0.75138 (19) | 0.3006 (5) | 0.0320 (8) | |
| N3 | 0.3324 (3) | 0.68679 (14) | 0.2864 (4) | 0.0302 (7) | |
| N5 | 0.2217 (3) | 0.55309 (15) | 0.0748 (4) | 0.0303 (7) | |
| N6 | 0.3037 (3) | 0.56944 (15) | −0.0648 (5) | 0.0337 (7) | |
| N4 | 0.4654 (3) | 0.65406 (15) | 0.3519 (5) | 0.0352 (8) | |
| C6 | 0.1944 (4) | 0.48894 (18) | 0.0809 (5) | 0.0293 (8) | |
| C7 | 0.3353 (4) | 0.5187 (2) | −0.1557 (5) | 0.0336 (9) | |
| C8 | 0.5721 (4) | 0.69334 (19) | 0.4114 (5) | 0.0355 (9) | |
| N1 | 0.1191 (4) | 0.46049 (16) | 0.2013 (5) | 0.0434 (9) | |
| H1A | 0.0845 | 0.4842 | 0.2825 | 0.052* | |
| H1B | 0.1050 | 0.4183 | 0.1981 | 0.052* | |
| N2 | 0.2347 (4) | 0.79357 (16) | 0.2434 (5) | 0.0460 (9) | |
| H2A | 0.1488 | 0.7789 | 0.1933 | 0.055* | |
| H2B | 0.2494 | 0.8355 | 0.2565 | 0.055* | |
| C20 | 0.4198 (5) | 0.5212 (2) | −0.3141 (6) | 0.0453 (11) | |
| H20A | 0.4970 | 0.4884 | −0.2961 | 0.068* | |
| H20B | 0.4632 | 0.5643 | −0.3198 | 0.068* | |
| H20C | 0.3538 | 0.5125 | −0.4285 | 0.068* | |
| C21 | 0.7265 (5) | 0.6726 (2) | 0.4872 (7) | 0.0552 (13) | |
| H21A | 0.7922 | 0.6872 | 0.4051 | 0.083* | |
| H21B | 0.7307 | 0.6252 | 0.4976 | 0.083* | |
| H21C | 0.7563 | 0.6920 | 0.6081 | 0.083* |
| Co1 | 0.0291 (3) | 0.0241 (3) | 0.0352 (3) | −0.0010 (2) | 0.0060 (2) | −0.0012 (2) |
| S2 | 0.0437 (6) | 0.0292 (5) | 0.0425 (6) | −0.0096 (4) | 0.0060 (5) | −0.0050 (5) |
| S1 | 0.0487 (6) | 0.0273 (5) | 0.0421 (6) | 0.0026 (4) | 0.0100 (5) | −0.0051 (5) |
| Cl1 | 0.0442 (5) | 0.0428 (6) | 0.0381 (6) | −0.0072 (4) | 0.0129 (4) | −0.0008 (5) |
| Cl2 | 0.0433 (6) | 0.0360 (6) | 0.0541 (7) | 0.0069 (5) | −0.0029 (5) | 0.0033 (5) |
| C1 | 0.039 (2) | 0.0279 (19) | 0.031 (2) | −0.0037 (17) | 0.0099 (17) | −0.0030 (17) |
| N3 | 0.0303 (16) | 0.0216 (15) | 0.0387 (19) | 0.0003 (13) | 0.0054 (13) | 0.0001 (14) |
| N5 | 0.0328 (16) | 0.0271 (17) | 0.0315 (18) | 0.0015 (13) | 0.0066 (13) | 0.0005 (14) |
| N6 | 0.0374 (17) | 0.0279 (17) | 0.0368 (19) | −0.0001 (14) | 0.0092 (14) | 0.0041 (15) |
| N4 | 0.0330 (17) | 0.0275 (16) | 0.045 (2) | −0.0003 (14) | 0.0046 (15) | 0.0001 (16) |
| C6 | 0.0294 (18) | 0.0277 (19) | 0.029 (2) | 0.0011 (15) | −0.0004 (15) | 0.0013 (16) |
| C7 | 0.035 (2) | 0.035 (2) | 0.031 (2) | 0.0025 (17) | 0.0041 (16) | 0.0003 (18) |
| C8 | 0.038 (2) | 0.033 (2) | 0.036 (2) | −0.0038 (17) | 0.0065 (17) | 0.0000 (18) |
| N1 | 0.057 (2) | 0.0255 (17) | 0.050 (2) | −0.0062 (16) | 0.0168 (18) | 0.0004 (16) |
| N2 | 0.047 (2) | 0.0247 (17) | 0.065 (3) | 0.0031 (16) | 0.0032 (18) | −0.0034 (18) |
| C20 | 0.044 (2) | 0.058 (3) | 0.037 (2) | 0.008 (2) | 0.0165 (19) | 0.000 (2) |
| C21 | 0.041 (2) | 0.054 (3) | 0.067 (3) | 0.003 (2) | −0.003 (2) | −0.005 (3) |
| Co1—N3 | 2.004 (3) | N4—C8 | 1.275 (5) |
| Co1—N5 | 2.009 (3) | C6—N1 | 1.330 (5) |
| Co1—Cl1 | 2.2416 (12) | C7—C20 | 1.490 (5) |
| Co1—Cl2 | 2.2590 (12) | C8—C21 | 1.486 (5) |
| S2—C1 | 1.731 (4) | N1—H1A | 0.8600 |
| S2—C8 | 1.756 (4) | N1—H1B | 0.8600 |
| S1—C6 | 1.725 (4) | N2—H2A | 0.8600 |
| S1—C7 | 1.735 (4) | N2—H2B | 0.8600 |
| C1—N3 | 1.311 (5) | C20—H20A | 0.9600 |
| C1—N2 | 1.329 (5) | C20—H20B | 0.9600 |
| N3—N4 | 1.395 (4) | C20—H20C | 0.9600 |
| N5—C6 | 1.320 (4) | C21—H21A | 0.9600 |
| N5—N6 | 1.397 (4) | C21—H21B | 0.9600 |
| N6—C7 | 1.277 (5) | C21—H21C | 0.9600 |
| N3—Co1—N5 | 105.16 (12) | N6—C7—S1 | 114.7 (3) |
| N3—Co1—Cl1 | 112.50 (10) | C20—C7—S1 | 120.9 (3) |
| N5—Co1—Cl1 | 107.63 (9) | N4—C8—C21 | 125.1 (4) |
| N3—Co1—Cl2 | 110.78 (9) | N4—C8—S2 | 113.7 (3) |
| N5—Co1—Cl2 | 108.41 (9) | C21—C8—S2 | 121.2 (3) |
| Cl1—Co1—Cl2 | 111.99 (5) | C6—N1—H1A | 120.0 |
| C1—S2—C8 | 87.17 (18) | C6—N1—H1B | 120.0 |
| C6—S1—C7 | 87.32 (18) | H1A—N1—H1B | 120.0 |
| N3—C1—N2 | 124.2 (3) | C1—N2—H2A | 120.0 |
| N3—C1—S2 | 113.2 (3) | C1—N2—H2B | 120.0 |
| N2—C1—S2 | 122.5 (3) | H2A—N2—H2B | 120.0 |
| C1—N3—N4 | 112.7 (3) | C7—C20—H20A | 109.5 |
| C1—N3—Co1 | 130.6 (3) | C7—C20—H20B | 109.5 |
| N4—N3—Co1 | 116.2 (2) | H20A—C20—H20B | 109.5 |
| C6—N5—N6 | 112.5 (3) | C7—C20—H20C | 109.5 |
| C6—N5—Co1 | 131.1 (3) | H20A—C20—H20C | 109.5 |
| N6—N5—Co1 | 116.2 (2) | H20B—C20—H20C | 109.5 |
| C7—N6—N5 | 112.4 (3) | C8—C21—H21A | 109.5 |
| C8—N4—N3 | 113.2 (3) | C8—C21—H21B | 109.5 |
| N5—C6—N1 | 124.5 (4) | H21A—C21—H21B | 109.5 |
| N5—C6—S1 | 113.1 (3) | C8—C21—H21C | 109.5 |
| N1—C6—S1 | 122.4 (3) | H21A—C21—H21C | 109.5 |
| N6—C7—C20 | 124.3 (4) | H21B—C21—H21C | 109.5 |
| C8—S2—C1—N3 | 0.3 (3) | C6—N5—N6—C7 | −0.4 (4) |
| C8—S2—C1—N2 | −178.0 (4) | Co1—N5—N6—C7 | −175.9 (3) |
| N2—C1—N3—N4 | 178.2 (3) | C1—N3—N4—C8 | −0.3 (5) |
| S2—C1—N3—N4 | −0.1 (4) | Co1—N3—N4—C8 | −173.4 (3) |
| N2—C1—N3—Co1 | −10.0 (6) | N6—N5—C6—N1 | 179.7 (3) |
| S2—C1—N3—Co1 | 171.75 (19) | Co1—N5—C6—N1 | −5.7 (6) |
| N5—Co1—N3—C1 | 145.3 (3) | N6—N5—C6—S1 | 0.2 (4) |
| Cl1—Co1—N3—C1 | −97.9 (3) | Co1—N5—C6—S1 | 174.85 (18) |
| Cl2—Co1—N3—C1 | 28.3 (4) | C7—S1—C6—N5 | 0.0 (3) |
| N5—Co1—N3—N4 | −43.2 (3) | C7—S1—C6—N1 | −179.5 (3) |
| Cl1—Co1—N3—N4 | 73.7 (3) | N5—N6—C7—C20 | 179.1 (3) |
| Cl2—Co1—N3—N4 | −160.1 (2) | N5—N6—C7—S1 | 0.3 (4) |
| N3—Co1—N5—C6 | 137.7 (3) | C6—S1—C7—N6 | −0.2 (3) |
| Cl1—Co1—N5—C6 | 17.5 (4) | C6—S1—C7—C20 | −179.0 (3) |
| Cl2—Co1—N5—C6 | −103.8 (3) | N3—N4—C8—C21 | −179.3 (4) |
| N3—Co1—N5—N6 | −47.8 (3) | N3—N4—C8—S2 | 0.6 (4) |
| Cl1—Co1—N5—N6 | −168.0 (2) | C1—S2—C8—N4 | −0.5 (3) |
| Cl2—Co1—N5—N6 | 70.7 (2) | C1—S2—C8—C21 | 179.4 (4) |
| H··· | ||||
| N1—H1 | 0.86 | 2.49 | 3.281 (4) | 153 |
| N2—H2 | 0.86 | 2.66 | 3.445 (4) | 152 |
| N2—H2 | 0.86 | 2.90 | 3.331 (4) | 113 |
| N2—H2 | 0.86 | 2.32 | 3.114 (5) | 153 |
| N1—H1 | 0.86 | 2.65 | 3.387 (4) | 144 |
| N1—H1 | 0.86 | 2.88 | 3.341 (3) | 115 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.49 | 3.281 (4) | 153 |
| N2—H2 | 0.86 | 2.66 | 3.445 (4) | 152 |
| N2—H2 | 0.86 | 2.32 | 3.114 (5) | 153 |
| N1—H1 | 0.86 | 2.65 | 3.387 (4) | 144 |
Symmetry codes: (i) ; (ii) .