Literature DB >> 22719326

Bis(2-amino-5-methyl-1,3,4-thia-diazole-κN(3))dichloridocobalt(II).

Ye Song1, Yu-Fei Ji, Min-Yan Kang, Zhi-Liang Liu.   

Abstract

In the monomeric title complex, [CoCl(2)(C(3)H(5)N(3)S)(2)], the Co(II) atom is tetra-coordinated by two chloride anions and two N atoms from two monodentate 2-amino-5-methyl-1,3,4-thia-diazole ligands, giving a slightly distorted tetra-hedral stereochemistry [bond angle range about Co = 105.16 (12)-112.50 (10)°]. In the complex, the dihedral angle between the 1,3,4-thia-diazole planes in the two ligands is 72.8 (1)°. There are two intra-molecular N-H⋯Cl inter-actions in the complex unit, while in the crystal, inter-molecular N-H⋯N and N-H⋯Cl hydrogen bonds link these units into a two-dimensional layered structure parallel to (011).

Entities:  

Year:  2012        PMID: 22719326      PMCID: PMC3379105          DOI: 10.1107/S1600536812020995

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of complexes containing 2,5-disubstituted 1,3,4-thia­diazo­les, see: Katritzky et al. (2010 ▶); Seed et al. (2007 ▶). For the preparation of the 2-amino-5-methyl-1,3,4-thia­diazole ligand, see: Chubb & Nissenbaum (1959 ▶). For complexes with this ligand, see: Lynch & Ewington (2001 ▶); Neverov et al. (1986 ▶); Antolini et al. (1988 ▶).

Experimental

Crystal data

[CoCl2(C3H5N3S)2] M = 360.15 Monoclinic, a = 9.124 (2) Å b = 20.180 (5) Å c = 7.2767 (19) Å β = 99.479 (5)° V = 1321.5 (6) Å3 Z = 4 Mo Kα radiation μ = 2.01 mm−1 T = 296 K 0.20 × 0.20 × 0.20 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.670, T max = 0.676 8978 measured reflections 3194 independent reflections 2125 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.110 S = 1.04 3194 reflections 156 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.60 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020995/zs2204sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020995/zs2204Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C3H5N3S)2]F(000) = 724
Mr = 360.15Dx = 1.810 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5643 reflections
a = 9.124 (2) Åθ = 0.7–0.7°
b = 20.180 (5) ŵ = 2.01 mm1
c = 7.2767 (19) ÅT = 296 K
β = 99.479 (5)°Block, blue
V = 1321.5 (6) Å30.20 × 0.20 × 0.20 mm
Z = 4
Bruker SMART APEX diffractometer3194 independent reflections
Radiation source: fine-focus sealed tube2125 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
Detector resolution: 8.192 pixels mm-1θmax = 28.2°, θmin = 2.0°
ω–2τ scansh = −9→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −26→26
Tmin = 0.670, Tmax = 0.676l = −8→9
8978 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.047P)2 + 0.1324P] where P = (Fo2 + 2Fc2)/3
3194 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.60 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.15275 (5)0.62934 (2)0.21631 (7)0.02936 (16)
S20.52153 (11)0.77737 (5)0.39642 (15)0.0386 (3)
S10.26820 (12)0.44424 (5)−0.08418 (15)0.0391 (3)
Cl10.06975 (11)0.58762 (5)0.46557 (14)0.0410 (3)
Cl2−0.02720 (11)0.68410 (5)0.02491 (16)0.0457 (3)
C10.3446 (4)0.75138 (19)0.3006 (5)0.0320 (8)
N30.3324 (3)0.68679 (14)0.2864 (4)0.0302 (7)
N50.2217 (3)0.55309 (15)0.0748 (4)0.0303 (7)
N60.3037 (3)0.56944 (15)−0.0648 (5)0.0337 (7)
N40.4654 (3)0.65406 (15)0.3519 (5)0.0352 (8)
C60.1944 (4)0.48894 (18)0.0809 (5)0.0293 (8)
C70.3353 (4)0.5187 (2)−0.1557 (5)0.0336 (9)
C80.5721 (4)0.69334 (19)0.4114 (5)0.0355 (9)
N10.1191 (4)0.46049 (16)0.2013 (5)0.0434 (9)
H1A0.08450.48420.28250.052*
H1B0.10500.41830.19810.052*
N20.2347 (4)0.79357 (16)0.2434 (5)0.0460 (9)
H2A0.14880.77890.19330.055*
H2B0.24940.83550.25650.055*
C200.4198 (5)0.5212 (2)−0.3141 (6)0.0453 (11)
H20A0.49700.4884−0.29610.068*
H20B0.46320.5643−0.31980.068*
H20C0.35380.5125−0.42850.068*
C210.7265 (5)0.6726 (2)0.4872 (7)0.0552 (13)
H21A0.79220.68720.40510.083*
H21B0.73070.62520.49760.083*
H21C0.75630.69200.60810.083*
U11U22U33U12U13U23
Co10.0291 (3)0.0241 (3)0.0352 (3)−0.0010 (2)0.0060 (2)−0.0012 (2)
S20.0437 (6)0.0292 (5)0.0425 (6)−0.0096 (4)0.0060 (5)−0.0050 (5)
S10.0487 (6)0.0273 (5)0.0421 (6)0.0026 (4)0.0100 (5)−0.0051 (5)
Cl10.0442 (5)0.0428 (6)0.0381 (6)−0.0072 (4)0.0129 (4)−0.0008 (5)
Cl20.0433 (6)0.0360 (6)0.0541 (7)0.0069 (5)−0.0029 (5)0.0033 (5)
C10.039 (2)0.0279 (19)0.031 (2)−0.0037 (17)0.0099 (17)−0.0030 (17)
N30.0303 (16)0.0216 (15)0.0387 (19)0.0003 (13)0.0054 (13)0.0001 (14)
N50.0328 (16)0.0271 (17)0.0315 (18)0.0015 (13)0.0066 (13)0.0005 (14)
N60.0374 (17)0.0279 (17)0.0368 (19)−0.0001 (14)0.0092 (14)0.0041 (15)
N40.0330 (17)0.0275 (16)0.045 (2)−0.0003 (14)0.0046 (15)0.0001 (16)
C60.0294 (18)0.0277 (19)0.029 (2)0.0011 (15)−0.0004 (15)0.0013 (16)
C70.035 (2)0.035 (2)0.031 (2)0.0025 (17)0.0041 (16)0.0003 (18)
C80.038 (2)0.033 (2)0.036 (2)−0.0038 (17)0.0065 (17)0.0000 (18)
N10.057 (2)0.0255 (17)0.050 (2)−0.0062 (16)0.0168 (18)0.0004 (16)
N20.047 (2)0.0247 (17)0.065 (3)0.0031 (16)0.0032 (18)−0.0034 (18)
C200.044 (2)0.058 (3)0.037 (2)0.008 (2)0.0165 (19)0.000 (2)
C210.041 (2)0.054 (3)0.067 (3)0.003 (2)−0.003 (2)−0.005 (3)
Co1—N32.004 (3)N4—C81.275 (5)
Co1—N52.009 (3)C6—N11.330 (5)
Co1—Cl12.2416 (12)C7—C201.490 (5)
Co1—Cl22.2590 (12)C8—C211.486 (5)
S2—C11.731 (4)N1—H1A0.8600
S2—C81.756 (4)N1—H1B0.8600
S1—C61.725 (4)N2—H2A0.8600
S1—C71.735 (4)N2—H2B0.8600
C1—N31.311 (5)C20—H20A0.9600
C1—N21.329 (5)C20—H20B0.9600
N3—N41.395 (4)C20—H20C0.9600
N5—C61.320 (4)C21—H21A0.9600
N5—N61.397 (4)C21—H21B0.9600
N6—C71.277 (5)C21—H21C0.9600
N3—Co1—N5105.16 (12)N6—C7—S1114.7 (3)
N3—Co1—Cl1112.50 (10)C20—C7—S1120.9 (3)
N5—Co1—Cl1107.63 (9)N4—C8—C21125.1 (4)
N3—Co1—Cl2110.78 (9)N4—C8—S2113.7 (3)
N5—Co1—Cl2108.41 (9)C21—C8—S2121.2 (3)
Cl1—Co1—Cl2111.99 (5)C6—N1—H1A120.0
C1—S2—C887.17 (18)C6—N1—H1B120.0
C6—S1—C787.32 (18)H1A—N1—H1B120.0
N3—C1—N2124.2 (3)C1—N2—H2A120.0
N3—C1—S2113.2 (3)C1—N2—H2B120.0
N2—C1—S2122.5 (3)H2A—N2—H2B120.0
C1—N3—N4112.7 (3)C7—C20—H20A109.5
C1—N3—Co1130.6 (3)C7—C20—H20B109.5
N4—N3—Co1116.2 (2)H20A—C20—H20B109.5
C6—N5—N6112.5 (3)C7—C20—H20C109.5
C6—N5—Co1131.1 (3)H20A—C20—H20C109.5
N6—N5—Co1116.2 (2)H20B—C20—H20C109.5
C7—N6—N5112.4 (3)C8—C21—H21A109.5
C8—N4—N3113.2 (3)C8—C21—H21B109.5
N5—C6—N1124.5 (4)H21A—C21—H21B109.5
N5—C6—S1113.1 (3)C8—C21—H21C109.5
N1—C6—S1122.4 (3)H21A—C21—H21C109.5
N6—C7—C20124.3 (4)H21B—C21—H21C109.5
C8—S2—C1—N30.3 (3)C6—N5—N6—C7−0.4 (4)
C8—S2—C1—N2−178.0 (4)Co1—N5—N6—C7−175.9 (3)
N2—C1—N3—N4178.2 (3)C1—N3—N4—C8−0.3 (5)
S2—C1—N3—N4−0.1 (4)Co1—N3—N4—C8−173.4 (3)
N2—C1—N3—Co1−10.0 (6)N6—N5—C6—N1179.7 (3)
S2—C1—N3—Co1171.75 (19)Co1—N5—C6—N1−5.7 (6)
N5—Co1—N3—C1145.3 (3)N6—N5—C6—S10.2 (4)
Cl1—Co1—N3—C1−97.9 (3)Co1—N5—C6—S1174.85 (18)
Cl2—Co1—N3—C128.3 (4)C7—S1—C6—N50.0 (3)
N5—Co1—N3—N4−43.2 (3)C7—S1—C6—N1−179.5 (3)
Cl1—Co1—N3—N473.7 (3)N5—N6—C7—C20179.1 (3)
Cl2—Co1—N3—N4−160.1 (2)N5—N6—C7—S10.3 (4)
N3—Co1—N5—C6137.7 (3)C6—S1—C7—N6−0.2 (3)
Cl1—Co1—N5—C617.5 (4)C6—S1—C7—C20−179.0 (3)
Cl2—Co1—N5—C6−103.8 (3)N3—N4—C8—C21−179.3 (4)
N3—Co1—N5—N6−47.8 (3)N3—N4—C8—S20.6 (4)
Cl1—Co1—N5—N6−168.0 (2)C1—S2—C8—N4−0.5 (3)
Cl2—Co1—N5—N670.7 (2)C1—S2—C8—C21179.4 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl10.862.493.281 (4)153
N2—H2A···Cl20.862.663.445 (4)152
N2—H2B···Cl1i0.862.903.331 (4)113
N2—H2B···N6ii0.862.323.114 (5)153
N1—H1B···Cl2iii0.862.653.387 (4)144
N1—H1A···Cl1iv0.862.883.341 (3)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl10.862.493.281 (4)153
N2—H2A⋯Cl20.862.663.445 (4)152
N2—H2B⋯N6i0.862.323.114 (5)153
N1—H1B⋯Cl2ii0.862.653.387 (4)144

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Synthesis of self-organizing mesogenic materials containing a sulfur-based five-membered heterocyclic core.

Authors:  Alexander Seed
Journal:  Chem Soc Rev       Date:  2007-07-02       Impact factor: 54.564

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Tetrakis(2-amino-5-methyl-1,3,4-thiadiazole-N3)chlorocopper(II) chloride monohydrate and tetrakis(2-amino-5-ethyl-1,3,4-thiadiazole-N3)chlorocopper(II) chloride.

Authors:  D E Lynch; J Ewington
Journal:  Acta Crystallogr C       Date:  2001-09-11       Impact factor: 1.172

4.  Efficient syntheses of thiadiazole peptides.

Authors:  Alan R Katritzky; Claudia El-Nachef; Kiran Bajaj; Jonathan Kubik; Danniebelle N Haase
Journal:  J Org Chem       Date:  2010-09-03       Impact factor: 4.354

  4 in total

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