| Literature DB >> 22719320 |
Ru-Qin Gao, Chao-Hui Xia, Guo-Ting Li.
Abstract
In the title compound, [Ni(C(9)H(6)N(3)O(3)S)(2)(H(2)O)(2)](n), the Ni(II) atom, located on an inversion center, is ligated in an octa-hedral geometry by two carboxyl-ate O atoms from two 2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetate (L) ligands and two O atoms from water mol-ecules in the equatorial plane, and two pyridine N atoms from other two L ligands at the apical sites. Two L ligands bridge pairs of metal atoms in an anti-parallel manner, forming centrosymmetric dinuclear quasi-recta-ngular units which are linked into infinite double-stranded chains parallel to [100]. O-H⋯O hydrogen bonds between the coordinating water mol-ecules and the carboxyl-ate groups of the L ligand as well as interchain S⋯N inter-actions [2.726 (2)-3.363 (2) Å] lead to the formation of a layer structure parallel to (001).Entities:
Year: 2012 PMID: 22719320 PMCID: PMC3379099 DOI: 10.1107/S1600536812020259
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C9H6N3O3S)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -p 2ybc | Cell parameters from 1733 reflections |
| θ = 2.6–24.8° | |
| µ = 1.20 mm−1 | |
| β = 95.687 (2)° | Needle, pale green |
| 0.15 × 0.13 × 0.07 mm | |
| Siemens SMART CCD diffractometer | 1488 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 25.0°, θmin = 2.6° |
| ω scan | |
| 7195 measured reflections | |
| 1822 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1822 reflections | (Δ/σ)max < 0.001 |
| 166 parameters | Δρmax = 0.25 e Å−3 |
| 2 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.5000 | 0.0000 | 0.5000 | 0.01764 (14) | |
| S1 | 0.22867 (5) | 0.52524 (11) | 0.32025 (4) | 0.02534 (17) | |
| O1 | 0.03642 (14) | 0.3493 (3) | 0.36616 (11) | 0.0251 (4) | |
| N1 | −0.33708 (16) | 0.0597 (4) | 0.46039 (13) | 0.0214 (5) | |
| C1 | −0.3094 (2) | 0.2565 (5) | 0.41861 (17) | 0.0267 (6) | |
| H1 | −0.3640 | 0.3791 | 0.4099 | 0.032* | |
| O2 | 0.42671 (14) | 0.2203 (3) | 0.40344 (10) | 0.0223 (4) | |
| N2 | 0.04253 (19) | −0.0307 (4) | 0.33372 (17) | 0.0349 (6) | |
| C2 | −0.2055 (2) | 0.2898 (5) | 0.38770 (18) | 0.0285 (6) | |
| H2 | −0.1895 | 0.4322 | 0.3586 | 0.034* | |
| O3 | 0.41911 (15) | −0.0211 (3) | 0.28832 (12) | 0.0307 (4) | |
| N3 | 0.14163 (18) | 0.0782 (4) | 0.30919 (16) | 0.0329 (6) | |
| C3 | −0.1253 (2) | 0.1121 (5) | 0.39981 (16) | 0.0227 (6) | |
| O4 | 0.49432 (15) | −0.2945 (3) | 0.41919 (12) | 0.0258 (4) | |
| C4 | −0.1526 (2) | −0.0926 (5) | 0.44222 (16) | 0.0254 (6) | |
| H4 | −0.0996 | −0.2183 | 0.4512 | 0.030* | |
| C5 | −0.2588 (2) | −0.1107 (5) | 0.47130 (16) | 0.0229 (6) | |
| H5 | −0.2769 | −0.2515 | 0.5005 | 0.027* | |
| C6 | −0.0151 (2) | 0.1322 (5) | 0.36561 (17) | 0.0241 (6) | |
| C7 | 0.13385 (19) | 0.2981 (5) | 0.32989 (16) | 0.0233 (6) | |
| C8 | 0.3334 (2) | 0.3561 (5) | 0.26933 (16) | 0.0241 (6) | |
| H8A | 0.2953 | 0.2784 | 0.2171 | 0.029* | |
| H8B | 0.3895 | 0.4684 | 0.2495 | 0.029* | |
| C9 | 0.39724 (19) | 0.1663 (5) | 0.32486 (16) | 0.0210 (5) | |
| H4B | 0.459 (2) | −0.417 (3) | 0.4250 (18) | 0.032* | |
| H4A | 0.470 (2) | −0.229 (5) | 0.3738 (11) | 0.032* |
| Ni1 | 0.0149 (2) | 0.0173 (2) | 0.0210 (2) | 0.00045 (18) | 0.00284 (17) | 0.00042 (19) |
| S1 | 0.0185 (3) | 0.0219 (3) | 0.0362 (4) | 0.0001 (3) | 0.0056 (3) | 0.0036 (3) |
| O1 | 0.0187 (9) | 0.0241 (10) | 0.0338 (10) | 0.0013 (8) | 0.0087 (8) | −0.0002 (8) |
| N1 | 0.0174 (11) | 0.0225 (11) | 0.0245 (11) | −0.0009 (9) | 0.0030 (9) | −0.0010 (9) |
| C1 | 0.0225 (14) | 0.0194 (13) | 0.0393 (16) | 0.0029 (11) | 0.0090 (12) | 0.0014 (12) |
| O2 | 0.0231 (9) | 0.0221 (9) | 0.0215 (10) | 0.0018 (7) | 0.0011 (7) | 0.0020 (7) |
| N2 | 0.0254 (12) | 0.0278 (13) | 0.0546 (16) | −0.0049 (11) | 0.0187 (11) | −0.0056 (12) |
| C2 | 0.0277 (14) | 0.0201 (14) | 0.0388 (16) | −0.0006 (11) | 0.0095 (12) | 0.0058 (12) |
| O3 | 0.0350 (11) | 0.0293 (11) | 0.0281 (10) | 0.0086 (9) | 0.0040 (8) | −0.0047 (9) |
| N3 | 0.0207 (12) | 0.0244 (13) | 0.0563 (16) | −0.0032 (10) | 0.0178 (11) | −0.0030 (11) |
| C3 | 0.0178 (12) | 0.0250 (14) | 0.0253 (14) | −0.0019 (11) | 0.0016 (10) | −0.0022 (11) |
| O4 | 0.0288 (11) | 0.0211 (10) | 0.0271 (10) | −0.0007 (8) | 0.0013 (8) | 0.0001 (8) |
| C4 | 0.0212 (13) | 0.0262 (14) | 0.0284 (14) | 0.0043 (11) | 0.0006 (11) | 0.0016 (12) |
| C5 | 0.0213 (13) | 0.0242 (14) | 0.0236 (14) | 0.0002 (11) | 0.0038 (11) | 0.0027 (11) |
| C6 | 0.0178 (13) | 0.0255 (14) | 0.0293 (14) | −0.0020 (11) | 0.0038 (11) | 0.0020 (12) |
| C7 | 0.0144 (12) | 0.0266 (15) | 0.0291 (14) | 0.0027 (11) | 0.0036 (11) | 0.0026 (12) |
| C8 | 0.0164 (13) | 0.0307 (15) | 0.0258 (14) | 0.0006 (11) | 0.0049 (11) | 0.0050 (12) |
| C9 | 0.0121 (12) | 0.0275 (14) | 0.0244 (14) | −0.0027 (11) | 0.0063 (10) | 0.0033 (12) |
| Ni1—O2i | 2.0702 (16) | N2—C6 | 1.275 (3) |
| Ni1—O2 | 2.0702 (16) | N2—N3 | 1.414 (3) |
| Ni1—O4 | 2.0781 (18) | C2—C3 | 1.384 (3) |
| Ni1—O4i | 2.0781 (18) | C2—H2 | 0.9500 |
| Ni1—N1ii | 2.1157 (19) | O3—C9 | 1.239 (3) |
| Ni1—N1iii | 2.1157 (19) | N3—C7 | 1.287 (3) |
| S1—C7 | 1.723 (3) | C3—C4 | 1.383 (4) |
| S1—C8 | 1.811 (2) | C3—C6 | 1.465 (3) |
| O1—C7 | 1.367 (3) | O4—H4B | 0.816 (10) |
| O1—C6 | 1.369 (3) | O4—H4A | 0.819 (10) |
| N1—C5 | 1.337 (3) | C4—C5 | 1.385 (3) |
| N1—C1 | 1.343 (3) | C4—H4 | 0.9500 |
| N1—Ni1iv | 2.1157 (19) | C5—H5 | 0.9500 |
| C1—C2 | 1.380 (4) | C8—C9 | 1.528 (3) |
| C1—H1 | 0.9500 | C8—H8A | 0.9900 |
| O2—C9 | 1.271 (3) | C8—H8B | 0.9900 |
| O2i—Ni1—O2 | 180.00 (6) | C7—N3—N2 | 105.6 (2) |
| O2i—Ni1—O4 | 86.66 (7) | C4—C3—C2 | 118.6 (2) |
| O2—Ni1—O4 | 93.34 (7) | C4—C3—C6 | 119.8 (2) |
| O2i—Ni1—O4i | 93.34 (7) | C2—C3—C6 | 121.6 (2) |
| O2—Ni1—O4i | 86.66 (7) | Ni1—O4—H4B | 127 (2) |
| O4—Ni1—O4i | 180.0 | Ni1—O4—H4A | 98 (2) |
| O2i—Ni1—N1ii | 88.50 (7) | H4B—O4—H4A | 110 (3) |
| O2—Ni1—N1ii | 91.50 (7) | C3—C4—C5 | 118.7 (2) |
| O4—Ni1—N1ii | 85.90 (7) | C3—C4—H4 | 120.6 |
| O4i—Ni1—N1ii | 94.10 (7) | C5—C4—H4 | 120.6 |
| O2i—Ni1—N1iii | 91.50 (7) | N1—C5—C4 | 123.4 (2) |
| O2—Ni1—N1iii | 88.50 (7) | N1—C5—H5 | 118.3 |
| O4—Ni1—N1iii | 94.10 (7) | C4—C5—H5 | 118.3 |
| O4i—Ni1—N1iii | 85.90 (7) | N2—C6—O1 | 113.0 (2) |
| N1ii—Ni1—N1iii | 180.0 | N2—C6—C3 | 128.2 (2) |
| C7—S1—C8 | 97.45 (12) | O1—C6—C3 | 118.9 (2) |
| C7—O1—C6 | 101.82 (19) | N3—C7—O1 | 113.0 (2) |
| C5—N1—C1 | 117.0 (2) | N3—C7—S1 | 129.2 (2) |
| C5—N1—Ni1iv | 119.62 (16) | O1—C7—S1 | 117.79 (18) |
| C1—N1—Ni1iv | 123.17 (17) | C9—C8—S1 | 116.64 (17) |
| N1—C1—C2 | 123.4 (2) | C9—C8—H8A | 108.1 |
| N1—C1—H1 | 118.3 | S1—C8—H8A | 108.1 |
| C2—C1—H1 | 118.3 | C9—C8—H8B | 108.1 |
| C9—O2—Ni1 | 127.26 (16) | S1—C8—H8B | 108.1 |
| C6—N2—N3 | 106.5 (2) | H8A—C8—H8B | 107.3 |
| C1—C2—C3 | 118.8 (2) | O3—C9—O2 | 126.3 (2) |
| C1—C2—H2 | 120.6 | O3—C9—C8 | 117.1 (2) |
| C3—C2—H2 | 120.6 | O2—C9—C8 | 116.5 (2) |
| H··· | ||||
| O4—H4 | 0.82 (1) | 1.83 (1) | 2.633 (3) | 167 (3) |
| O4—H4 | 0.82 (1) | 2.11 (2) | 2.857 (3) | 153 (3) |
Selected bond lengths (Å)
| Ni1—O2 | 2.0702 (16) |
| Ni1—O4 | 2.0781 (18) |
| Ni1—N1i | 2.1157 (19) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4 | 0.82 (1) | 1.83 (1) | 2.633 (3) | 167 (3) |
| O4—H4 | 0.82 (1) | 2.11 (2) | 2.857 (3) | 153 (3) |
Symmetry code: (ii) .