Literature DB >> 22719320

catena-Poly[[diaqua-nickel(II)]-bis-(μ-2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetato)].

Ru-Qin Gao, Chao-Hui Xia, Guo-Ting Li.   

Abstract

In the title compound, [Ni(C(9)H(6)N(3)O(3)S)(2)(H(2)O)(2)](n), the Ni(II) atom, located on an inversion center, is ligated in an octa-hedral geometry by two carboxyl-ate O atoms from two 2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetate (L) ligands and two O atoms from water mol-ecules in the equatorial plane, and two pyridine N atoms from other two L ligands at the apical sites. Two L ligands bridge pairs of metal atoms in an anti-parallel manner, forming centrosymmetric dinuclear quasi-recta-ngular units which are linked into infinite double-stranded chains parallel to [100]. O-H⋯O hydrogen bonds between the coordinating water mol-ecules and the carboxyl-ate groups of the L ligand as well as interchain S⋯N inter-actions [2.726 (2)-3.363 (2) Å] lead to the formation of a layer structure parallel to (001).

Entities:  

Year:  2012        PMID: 22719320      PMCID: PMC3379099          DOI: 10.1107/S1600536812020259

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For coordination polymers of 1,3,4-oxadiazole-2-thione, see: Wu et al. (2010 ▶); Lundin et al. (2006 ▶); Wang et al. (2007) ▶. For coordination polymers of symmetric pyridyl-containing oxadiazole ligands, see: Ma et al. (2007 ▶); Du et al. (2006) ▶. For unsymmetric pyridyl-containing oxadiazole ligands, see: Wang & Li (2011 ▶).

Experimental

Crystal data

[Ni(C9H6N3O3S)2(H2O)2] M = 567.20 Monoclinic, a = 11.8862 (18) Å b = 5.6431 (9) Å c = 15.500 (2) Å β = 95.687 (2)° V = 1034.5 (3) Å3 Z = 2 Mo Kα radiation μ = 1.20 mm−1 T = 293 K 0.15 × 0.13 × 0.07 mm

Data collection

Siemens SMART CCD diffractometer 7195 measured reflections 1822 independent reflections 1488 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.068 S = 1.03 1822 reflections 166 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1994 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812020259/zj2075sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812020259/zj2075Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C9H6N3O3S)2(H2O)2]F(000) = 580
Mr = 567.20Dx = 1.821 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -p 2ybcCell parameters from 1733 reflections
a = 11.8862 (18) Åθ = 2.6–24.8°
b = 5.6431 (9) ŵ = 1.20 mm1
c = 15.500 (2) ÅT = 293 K
β = 95.687 (2)°Needle, pale green
V = 1034.5 (3) Å30.15 × 0.13 × 0.07 mm
Z = 2
Siemens SMART CCD diffractometer1488 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.034
Graphite monochromatorθmax = 25.0°, θmin = 2.6°
ω scanh = −14→13
7195 measured reflectionsk = −6→6
1822 independent reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.068H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0266P)2 + 0.8247P] where P = (Fo2 + 2Fc2)/3
1822 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.25 e Å3
2 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.00000.50000.01764 (14)
S10.22867 (5)0.52524 (11)0.32025 (4)0.02534 (17)
O10.03642 (14)0.3493 (3)0.36616 (11)0.0251 (4)
N1−0.33708 (16)0.0597 (4)0.46039 (13)0.0214 (5)
C1−0.3094 (2)0.2565 (5)0.41861 (17)0.0267 (6)
H1−0.36400.37910.40990.032*
O20.42671 (14)0.2203 (3)0.40344 (10)0.0223 (4)
N20.04253 (19)−0.0307 (4)0.33372 (17)0.0349 (6)
C2−0.2055 (2)0.2898 (5)0.38770 (18)0.0285 (6)
H2−0.18950.43220.35860.034*
O30.41911 (15)−0.0211 (3)0.28832 (12)0.0307 (4)
N30.14163 (18)0.0782 (4)0.30919 (16)0.0329 (6)
C3−0.1253 (2)0.1121 (5)0.39981 (16)0.0227 (6)
O40.49432 (15)−0.2945 (3)0.41919 (12)0.0258 (4)
C4−0.1526 (2)−0.0926 (5)0.44222 (16)0.0254 (6)
H4−0.0996−0.21830.45120.030*
C5−0.2588 (2)−0.1107 (5)0.47130 (16)0.0229 (6)
H5−0.2769−0.25150.50050.027*
C6−0.0151 (2)0.1322 (5)0.36561 (17)0.0241 (6)
C70.13385 (19)0.2981 (5)0.32989 (16)0.0233 (6)
C80.3334 (2)0.3561 (5)0.26933 (16)0.0241 (6)
H8A0.29530.27840.21710.029*
H8B0.38950.46840.24950.029*
C90.39724 (19)0.1663 (5)0.32486 (16)0.0210 (5)
H4B0.459 (2)−0.417 (3)0.4250 (18)0.032*
H4A0.470 (2)−0.229 (5)0.3738 (11)0.032*
U11U22U33U12U13U23
Ni10.0149 (2)0.0173 (2)0.0210 (2)0.00045 (18)0.00284 (17)0.00042 (19)
S10.0185 (3)0.0219 (3)0.0362 (4)0.0001 (3)0.0056 (3)0.0036 (3)
O10.0187 (9)0.0241 (10)0.0338 (10)0.0013 (8)0.0087 (8)−0.0002 (8)
N10.0174 (11)0.0225 (11)0.0245 (11)−0.0009 (9)0.0030 (9)−0.0010 (9)
C10.0225 (14)0.0194 (13)0.0393 (16)0.0029 (11)0.0090 (12)0.0014 (12)
O20.0231 (9)0.0221 (9)0.0215 (10)0.0018 (7)0.0011 (7)0.0020 (7)
N20.0254 (12)0.0278 (13)0.0546 (16)−0.0049 (11)0.0187 (11)−0.0056 (12)
C20.0277 (14)0.0201 (14)0.0388 (16)−0.0006 (11)0.0095 (12)0.0058 (12)
O30.0350 (11)0.0293 (11)0.0281 (10)0.0086 (9)0.0040 (8)−0.0047 (9)
N30.0207 (12)0.0244 (13)0.0563 (16)−0.0032 (10)0.0178 (11)−0.0030 (11)
C30.0178 (12)0.0250 (14)0.0253 (14)−0.0019 (11)0.0016 (10)−0.0022 (11)
O40.0288 (11)0.0211 (10)0.0271 (10)−0.0007 (8)0.0013 (8)0.0001 (8)
C40.0212 (13)0.0262 (14)0.0284 (14)0.0043 (11)0.0006 (11)0.0016 (12)
C50.0213 (13)0.0242 (14)0.0236 (14)0.0002 (11)0.0038 (11)0.0027 (11)
C60.0178 (13)0.0255 (14)0.0293 (14)−0.0020 (11)0.0038 (11)0.0020 (12)
C70.0144 (12)0.0266 (15)0.0291 (14)0.0027 (11)0.0036 (11)0.0026 (12)
C80.0164 (13)0.0307 (15)0.0258 (14)0.0006 (11)0.0049 (11)0.0050 (12)
C90.0121 (12)0.0275 (14)0.0244 (14)−0.0027 (11)0.0063 (10)0.0033 (12)
Ni1—O2i2.0702 (16)N2—C61.275 (3)
Ni1—O22.0702 (16)N2—N31.414 (3)
Ni1—O42.0781 (18)C2—C31.384 (3)
Ni1—O4i2.0781 (18)C2—H20.9500
Ni1—N1ii2.1157 (19)O3—C91.239 (3)
Ni1—N1iii2.1157 (19)N3—C71.287 (3)
S1—C71.723 (3)C3—C41.383 (4)
S1—C81.811 (2)C3—C61.465 (3)
O1—C71.367 (3)O4—H4B0.816 (10)
O1—C61.369 (3)O4—H4A0.819 (10)
N1—C51.337 (3)C4—C51.385 (3)
N1—C11.343 (3)C4—H40.9500
N1—Ni1iv2.1157 (19)C5—H50.9500
C1—C21.380 (4)C8—C91.528 (3)
C1—H10.9500C8—H8A0.9900
O2—C91.271 (3)C8—H8B0.9900
O2i—Ni1—O2180.00 (6)C7—N3—N2105.6 (2)
O2i—Ni1—O486.66 (7)C4—C3—C2118.6 (2)
O2—Ni1—O493.34 (7)C4—C3—C6119.8 (2)
O2i—Ni1—O4i93.34 (7)C2—C3—C6121.6 (2)
O2—Ni1—O4i86.66 (7)Ni1—O4—H4B127 (2)
O4—Ni1—O4i180.0Ni1—O4—H4A98 (2)
O2i—Ni1—N1ii88.50 (7)H4B—O4—H4A110 (3)
O2—Ni1—N1ii91.50 (7)C3—C4—C5118.7 (2)
O4—Ni1—N1ii85.90 (7)C3—C4—H4120.6
O4i—Ni1—N1ii94.10 (7)C5—C4—H4120.6
O2i—Ni1—N1iii91.50 (7)N1—C5—C4123.4 (2)
O2—Ni1—N1iii88.50 (7)N1—C5—H5118.3
O4—Ni1—N1iii94.10 (7)C4—C5—H5118.3
O4i—Ni1—N1iii85.90 (7)N2—C6—O1113.0 (2)
N1ii—Ni1—N1iii180.0N2—C6—C3128.2 (2)
C7—S1—C897.45 (12)O1—C6—C3118.9 (2)
C7—O1—C6101.82 (19)N3—C7—O1113.0 (2)
C5—N1—C1117.0 (2)N3—C7—S1129.2 (2)
C5—N1—Ni1iv119.62 (16)O1—C7—S1117.79 (18)
C1—N1—Ni1iv123.17 (17)C9—C8—S1116.64 (17)
N1—C1—C2123.4 (2)C9—C8—H8A108.1
N1—C1—H1118.3S1—C8—H8A108.1
C2—C1—H1118.3C9—C8—H8B108.1
C9—O2—Ni1127.26 (16)S1—C8—H8B108.1
C6—N2—N3106.5 (2)H8A—C8—H8B107.3
C1—C2—C3118.8 (2)O3—C9—O2126.3 (2)
C1—C2—H2120.6O3—C9—C8117.1 (2)
C3—C2—H2120.6O2—C9—C8116.5 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4A···O30.82 (1)1.83 (1)2.633 (3)167 (3)
O4—H4B···O2v0.82 (1)2.11 (2)2.857 (3)153 (3)
Table 1

Selected bond lengths (Å)

Ni1—O22.0702 (16)
Ni1—O42.0781 (18)
Ni1—N1i2.1157 (19)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4A⋯O30.82 (1)1.83 (1)2.633 (3)167 (3)
O4—H4B⋯O2ii0.82 (1)2.11 (2)2.857 (3)153 (3)

Symmetry code: (ii) .

  4 in total

1.  Synthesis and characterization of a multicomponent rhenium(I) complex for application as an OLED dopant.

Authors:  Natasha J Lundin; Allan G Blackman; Keith C Gordon; David L Officer
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2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Modulated preparation and structural diversification of ZnII and CdII metal-organic frameworks with a versatile building block 5-(4-pyridyl)-1,3,4-oxadiazole-2-thiol.

Authors:  Miao Du; Zhi-Hui Zhang; Xiao-Jun Zhao; Qiang Xu
Journal:  Inorg Chem       Date:  2006-07-24       Impact factor: 5.165

4.  Tetra-aqua-bis-(2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetato)-iron(II).

Authors:  Hai-Rong Wang; Guo-Ting Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  4 in total

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