Literature DB >> 22058719

Tetra-aqua-bis-(2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetato)-iron(II).

Hai-Rong Wang1, Guo-Ting Li.   

Abstract

In the title compound, [Fe(C(9)H(6)N(3)O(3)S)(2)(H(2)O)(4)] or [Fe(POA)(2)(H(2)O)(4)], the Fe(II) atom is located on an inversion center and is ligated by four O atoms of coordinated water mol-ecules in the equatorial plane while two POA ligands acting as monodentate ligands occupy the axial positions through their pyridyl N atoms, completing a slightly distorted octa-hedral coordination geometry. A three-dimensional supra-molecular network is formed by multiple O-H⋯O hydrogen-bonding inter-actions between the coordinated water donors and the uncoordinated carboxyl acceptors.

Entities:  

Year:  2011        PMID: 22058719      PMCID: PMC3201331          DOI: 10.1107/S1600536811038918

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 5-(4-pyrid­yl)-1,3,4-oxadiazole-2-thione, see: Young & Wood (1955 ▶). For metal-assisted transformation of N-benzoyl­dithio­carbazate to 5-phenyl-1,3,4-oxadiazole-2-thiol (pot) in the presence of ethyl­enediamine, and its first-row transition-metal complexes, see: Tripathi et al. (2007 ▶). For ZnII and CdII metal-organic polymers with the versatile building block 5-(4-pyrid­yl)-1,3,4-oxadiazole-2-thiol, see: Du et al. (2006 ▶).

Experimental

Crystal data

[Fe(C9H6N3O3S)2(H2O)4] M = 600.37 Monoclinic, a = 14.365 (3) Å b = 10.709 (2) Å c = 7.5709 (15) Å β = 91.45 (3)° V = 1164.2 (4) Å3 Z = 2 Mo Kα radiation μ = 0.90 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.949, T max = 1.000 12366 measured reflections 2285 independent reflections 2179 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.078 S = 1.13 2285 reflections 185 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1994 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811038918/si2366sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811038918/si2366Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C9H6N3O3S)2(H2O)4]F(000) = 616
Mr = 600.37Dx = 1.713 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3319 reflections
a = 14.365 (3) Åθ = 2.4–30.9°
b = 10.709 (2) ŵ = 0.90 mm1
c = 7.5709 (15) ÅT = 293 K
β = 91.45 (3)°Prism, yellow
V = 1164.2 (4) Å30.20 × 0.20 × 0.20 mm
Z = 2
Siemens SMART CCD diffractometer2285 independent reflections
Radiation source: fine-focus sealed tube2179 reflections with I > 2σ(I)
graphiteRint = 0.034
ω scanθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −17→17
Tmin = 0.949, Tmax = 1.000k = −13→13
12366 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0327P)2 + 0.5694P] where P = (Fo2 + 2Fc2)/3
2285 reflections(Δ/σ)max < 0.001
185 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.00000.50000.00000.02246 (14)
S10.65085 (4)0.54011 (6)0.38712 (8)0.03380 (17)
O10.03673 (11)0.31754 (16)0.0529 (3)0.0319 (4)
O2−0.01063 (14)0.52700 (19)0.2780 (2)0.0397 (5)
O30.48086 (10)0.57082 (15)0.2519 (2)0.0302 (4)
O40.84192 (11)0.52207 (17)0.5162 (2)0.0407 (4)
O50.84840 (11)0.70106 (16)0.6691 (2)0.0397 (4)
N10.14562 (12)0.57012 (18)0.0402 (2)0.0272 (4)
N20.44244 (13)0.76466 (19)0.3170 (3)0.0381 (5)
N30.53408 (13)0.74249 (19)0.3821 (3)0.0378 (5)
C10.21910 (15)0.4960 (2)0.0133 (3)0.0281 (5)
H10.20930.4211−0.05160.034*
C20.30836 (15)0.5226 (2)0.0746 (3)0.0298 (5)
H20.35820.46650.05440.036*
C30.16251 (15)0.6786 (2)0.1237 (3)0.0329 (5)
H30.11190.73410.13980.039*
C40.24920 (15)0.7138 (2)0.1873 (3)0.0331 (5)
H40.25800.79200.24460.040*
C50.32349 (14)0.6327 (2)0.1658 (3)0.0259 (5)
C60.41495 (14)0.6630 (2)0.2443 (3)0.0277 (5)
C70.55192 (14)0.6288 (2)0.3411 (3)0.0288 (5)
C80.70959 (16)0.6582 (2)0.5169 (3)0.0367 (6)
H8A0.71160.73660.44780.044*
H8B0.67360.67470.62430.044*
C90.80811 (15)0.6208 (2)0.5712 (3)0.0312 (5)
H2A0.037 (2)0.516 (3)0.338 (4)0.053 (9)*
H2B−0.056 (3)0.522 (3)0.346 (5)0.068 (11)*
H1A0.067 (2)0.281 (3)−0.024 (4)0.051 (9)*
H1B0.070 (2)0.312 (3)0.145 (5)0.066 (11)*
U11U22U33U12U13U23
Fe10.0168 (2)0.0266 (2)0.0237 (2)0.00109 (17)−0.00395 (17)0.00006 (17)
S10.0217 (3)0.0386 (3)0.0406 (4)0.0032 (2)−0.0081 (2)−0.0074 (3)
O10.0271 (9)0.0336 (9)0.0345 (10)0.0056 (7)−0.0080 (8)0.0003 (8)
O20.0267 (9)0.0674 (13)0.0250 (9)0.0050 (9)−0.0024 (8)−0.0034 (8)
O30.0180 (8)0.0341 (9)0.0380 (9)−0.0009 (6)−0.0067 (7)−0.0049 (7)
O40.0249 (9)0.0502 (11)0.0468 (11)0.0041 (8)−0.0009 (8)0.0008 (9)
O50.0322 (9)0.0462 (10)0.0399 (10)−0.0095 (8)−0.0174 (8)0.0072 (8)
N10.0174 (9)0.0328 (11)0.0311 (10)−0.0016 (8)−0.0037 (8)0.0004 (8)
N20.0216 (10)0.0379 (12)0.0539 (13)0.0011 (8)−0.0125 (9)−0.0074 (10)
N30.0223 (10)0.0368 (12)0.0536 (13)0.0004 (8)−0.0136 (9)−0.0090 (10)
C10.0229 (11)0.0314 (12)0.0298 (11)−0.0027 (9)−0.0001 (9)−0.0026 (9)
C20.0191 (11)0.0351 (13)0.0352 (12)0.0029 (9)−0.0010 (9)−0.0024 (10)
C30.0209 (11)0.0311 (12)0.0464 (14)0.0024 (9)−0.0052 (10)−0.0042 (11)
C40.0267 (12)0.0297 (12)0.0425 (14)−0.0005 (10)−0.0043 (10)−0.0050 (10)
C50.0176 (10)0.0337 (12)0.0262 (11)−0.0044 (9)−0.0036 (9)0.0042 (9)
C60.0177 (10)0.0338 (13)0.0315 (12)0.0011 (9)−0.0012 (9)0.0009 (10)
C70.0184 (10)0.0376 (13)0.0302 (12)−0.0044 (9)−0.0041 (9)−0.0014 (10)
C80.0270 (12)0.0391 (14)0.0433 (14)−0.0001 (10)−0.0134 (11)−0.0039 (11)
C90.0230 (11)0.0401 (14)0.0303 (12)−0.0037 (10)−0.0028 (9)0.0108 (11)
Fe1—O1i2.0605 (17)N1—C31.341 (3)
Fe1—O12.0605 (17)N2—C61.278 (3)
Fe1—O22.1340 (18)N2—N31.414 (3)
Fe1—O2i2.1340 (18)N3—C71.284 (3)
Fe1—N1i2.2359 (18)C1—C21.382 (3)
Fe1—N12.2359 (18)C1—H10.9500
S1—C71.737 (2)C2—C51.381 (3)
S1—C81.799 (2)C2—H20.9500
O1—H1A0.83 (3)C3—C41.377 (3)
O1—H1B0.83 (3)C3—H30.9500
O2—H2A0.82 (3)C4—C51.389 (3)
O2—H2B0.84 (4)C4—H40.9500
O3—C71.360 (2)C5—C61.464 (3)
O3—C61.368 (3)C8—C91.517 (3)
O4—C91.240 (3)C8—H8A0.9900
O5—C91.265 (3)C8—H8B0.9900
N1—C11.340 (3)
O1i—Fe1—O1180.0N1—C1—H1118.2
O1i—Fe1—O292.22 (8)C2—C1—H1118.2
O1—Fe1—O287.78 (8)C5—C2—C1118.5 (2)
O1i—Fe1—O2i87.78 (8)C5—C2—H2120.8
O1—Fe1—O2i92.22 (8)C1—C2—H2120.8
O2—Fe1—O2i180.00 (11)N1—C3—C4123.6 (2)
O1i—Fe1—N1i93.33 (7)N1—C3—H3118.2
O1—Fe1—N1i86.67 (7)C4—C3—H3118.2
O2—Fe1—N1i95.14 (8)C3—C4—C5118.6 (2)
O2i—Fe1—N1i84.86 (8)C3—C4—H4120.7
O1i—Fe1—N186.67 (7)C5—C4—H4120.7
O1—Fe1—N193.33 (7)C2—C5—C4118.74 (19)
O2—Fe1—N184.86 (8)C2—C5—C6121.4 (2)
O2i—Fe1—N195.14 (8)C4—C5—C6119.9 (2)
N1i—Fe1—N1180.0N2—C6—O3112.99 (18)
C7—S1—C895.46 (11)N2—C6—C5128.9 (2)
Fe1—O1—H1A116 (2)O3—C6—C5118.03 (19)
Fe1—O1—H1B112 (2)N3—C7—O3113.64 (19)
H1A—O1—H1B105 (3)N3—C7—S1129.59 (17)
Fe1—O2—H2A116 (2)O3—C7—S1116.75 (17)
Fe1—O2—H2B132 (2)C9—C8—S1112.55 (17)
H2A—O2—H2B108 (3)C9—C8—H8A109.1
C7—O3—C6101.62 (17)S1—C8—H8A109.1
C1—N1—C3116.77 (19)C9—C8—H8B109.1
C1—N1—Fe1121.21 (15)S1—C8—H8B109.1
C3—N1—Fe1120.82 (15)H8A—C8—H8B107.8
C6—N2—N3106.39 (19)O4—C9—O5126.8 (2)
C7—N3—N2105.35 (18)O4—C9—C8120.3 (2)
N1—C1—C2123.7 (2)O5—C9—C8112.9 (2)
O1i—Fe1—N1—C1−152.98 (18)C3—C4—C5—C22.9 (3)
O1—Fe1—N1—C127.02 (18)C3—C4—C5—C6−175.1 (2)
O2—Fe1—N1—C1114.48 (18)N3—N2—C6—O3−0.5 (3)
O2i—Fe1—N1—C1−65.52 (18)N3—N2—C6—C5175.9 (2)
N1i—Fe1—N1—C17(44)C7—O3—C6—N20.8 (3)
O1i—Fe1—N1—C339.94 (18)C7—O3—C6—C5−176.01 (19)
O1—Fe1—N1—C3−140.06 (18)C2—C5—C6—N2172.6 (2)
O2—Fe1—N1—C3−52.59 (18)C4—C5—C6—N2−9.4 (4)
O2i—Fe1—N1—C3127.41 (18)C2—C5—C6—O3−11.1 (3)
N1i—Fe1—N1—C3−161 (44)C4—C5—C6—O3166.9 (2)
C6—N2—N3—C70.0 (3)N2—N3—C7—O30.6 (3)
C3—N1—C1—C23.6 (3)N2—N3—C7—S1−177.87 (18)
Fe1—N1—C1—C2−164.01 (18)C6—O3—C7—N3−0.8 (3)
N1—C1—C2—C5−1.3 (4)C6—O3—C7—S1177.81 (15)
C1—N1—C3—C4−2.6 (3)C8—S1—C7—N33.4 (3)
Fe1—N1—C3—C4165.05 (19)C8—S1—C7—O3−174.96 (18)
N1—C3—C4—C5−0.6 (4)C7—S1—C8—C9−174.28 (18)
C1—C2—C5—C4−2.0 (3)S1—C8—C9—O44.8 (3)
C1—C2—C5—C6176.0 (2)S1—C8—C9—O5−177.06 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O5ii0.83 (3)1.87 (3)2.691 (3)170 (3)
O1—H1B···O5iii0.83 (3)1.82 (4)2.649 (2)174 (3)
O2—H2A···O4iii0.82 (3)2.07 (3)2.896 (3)177 (3)
O2—H2B···O4iv0.84 (4)1.98 (4)2.817 (3)175 (3)
Table 1

Selected bond lengths (Å)

Fe1—O12.0605 (17)
Fe1—O22.1340 (18)
Fe1—N12.2359 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O5i0.83 (3)1.87 (3)2.691 (3)170 (3)
O1—H1B⋯O5ii0.83 (3)1.82 (4)2.649 (2)174 (3)
O2—H2A⋯O4ii0.82 (3)2.07 (3)2.896 (3)177 (3)
O2—H2B⋯O4iii0.84 (4)1.98 (4)2.817 (3)175 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Modulated preparation and structural diversification of ZnII and CdII metal-organic frameworks with a versatile building block 5-(4-pyridyl)-1,3,4-oxadiazole-2-thiol.

Authors:  Miao Du; Zhi-Hui Zhang; Xiao-Jun Zhao; Qiang Xu
Journal:  Inorg Chem       Date:  2006-07-24       Impact factor: 5.165

  2 in total
  1 in total

1.  catena-Poly[[diaqua-nickel(II)]-bis-(μ-2-{[5-(pyridin-4-yl)-1,3,4-oxadiazol-2-yl]sulfan-yl}acetato)].

Authors:  Ru-Qin Gao; Chao-Hui Xia; Guo-Ting Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-12
  1 in total

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