Literature DB >> 22719298

Bis[(E)-N-(pyridin-3-yl-methyl-idene)hydroxyl-amine-κN(1)]silver(I) perchlorate.

Jing Xu, Shan Gao, Seik Weng Ng, Edward R T Tiekink.   

Abstract

Each of the ions in the title salt, [Ag(C(6)H(6)N(2)O)(2)]ClO(4), is completed by the application of crystallographic twofold symmetry. The Ag(I) atom is coordinated by two pyridine N atoms in an almost linear fashion [N-Ag-N = 170.0 (2)°], with the T-shaped coordination geometry being completed by a weakly associated perchlorate-O atom. Supra-molecular zigzag chains along [100] mediated by O-H⋯N hydrogen bonds [as parts of R(2) (2)(6) loops] feature in the crystal packing. The perchlorate O atoms are disordered over two sets of sites in a statistical ratio.

Entities:  

Year:  2012        PMID: 22719298      PMCID: PMC3379077          DOI: 10.1107/S1600536812019290

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural diversity in the structures of silver salts, see: Kundu et al. (2010 ▶). For related structures, see: Abu-Youssef et al. (2010 ▶); Xu et al. (2012 ▶).

Experimental

Crystal data

[Ag(C6H6N2O)2]ClO4 M = 451.58 Monoclinic, a = 15.382 (5) Å b = 8.234 (3) Å c = 13.320 (4) Å β = 111.531 (15)° V = 1569.3 (8) Å3 Z = 4 Mo Kα radiation μ = 1.49 mm−1 T = 293 K 0.18 × 0.16 × 0.14 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.449, T max = 1.000 7501 measured reflections 1795 independent reflections 1176 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.147 S = 1.06 1795 reflections 129 parameters 34 restraints H-atom parameters constrained Δρmax = 0.74 e Å−3 Δρmin = −0.49 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publicatioical">n: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812019290/hb6761sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812019290/hb6761Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ag(C6H6N2O)2]ClO4F(000) = 896
Mr = 451.58Dx = 1.911 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3613 reflections
a = 15.382 (5) Åθ = 3.0–27.5°
b = 8.234 (3) ŵ = 1.49 mm1
c = 13.320 (4) ÅT = 293 K
β = 111.531 (15)°Prism, colourless
V = 1569.3 (8) Å30.18 × 0.16 × 0.14 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer1795 independent reflections
Radiation source: fine-focus sealed tube1176 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.052
ω scanθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −19→19
Tmin = 0.449, Tmax = 1.000k = −10→10
7501 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0776P)2 + 1.2356P] where P = (Fo2 + 2Fc2)/3
1795 reflections(Δ/σ)max = 0.001
129 parametersΔρmax = 0.74 e Å3
34 restraintsΔρmin = −0.49 e Å3
xyzUiso*/UeqOcc. (<1)
Ag1.00000.04678 (8)0.75000.0718 (3)
Cl1.0000−0.4118 (3)0.75000.0779 (6)
O10.5863 (3)0.6168 (5)0.5648 (4)0.0819 (13)
H1o0.52970.63700.52980.123*
N10.8519 (3)0.0695 (5)0.6720 (4)0.0573 (11)
N20.6021 (3)0.4515 (5)0.5606 (4)0.0603 (12)
C10.7951 (4)−0.0529 (6)0.6259 (5)0.0617 (14)
H10.8207−0.15590.62850.074*
C20.7003 (4)−0.0342 (7)0.5744 (5)0.0645 (14)
H20.6630−0.12340.54370.077*
C30.6612 (4)0.1150 (7)0.5686 (4)0.0587 (13)
H30.59710.12890.53370.070*
C40.7187 (3)0.2477 (6)0.6158 (4)0.0495 (11)
C50.8130 (3)0.2174 (7)0.6658 (4)0.0544 (12)
H50.85210.30440.69710.065*
C60.6859 (4)0.4136 (7)0.6113 (4)0.0571 (12)
H60.72830.49430.64690.068*
O21.0050 (8)−0.2768 (10)0.6778 (8)0.105 (3)0.50
O30.9040 (6)−0.4057 (13)0.7376 (10)0.110 (4)0.50
O41.0044 (7)−0.5524 (9)0.6836 (7)0.089 (3)0.50
O51.0649 (10)−0.4065 (18)0.8439 (7)0.171 (6)0.50
U11U22U33U12U13U23
Ag0.0392 (4)0.0813 (5)0.0859 (5)0.0000.0121 (3)0.000
Cl0.0624 (13)0.0605 (12)0.1049 (17)0.0000.0238 (13)0.000
O10.064 (3)0.054 (2)0.106 (3)0.005 (2)0.005 (3)0.007 (2)
N10.042 (2)0.061 (3)0.063 (3)−0.0016 (19)0.013 (2)0.000 (2)
N20.054 (3)0.054 (3)0.066 (3)0.005 (2)0.013 (2)0.006 (2)
C10.056 (3)0.051 (3)0.072 (3)0.000 (2)0.017 (3)0.000 (3)
C20.048 (3)0.058 (3)0.075 (4)−0.009 (3)0.009 (3)−0.006 (3)
C30.040 (3)0.068 (3)0.060 (3)−0.003 (3)0.009 (2)0.002 (3)
C40.043 (2)0.055 (3)0.045 (2)−0.006 (2)0.010 (2)0.002 (2)
C50.040 (3)0.059 (3)0.057 (3)−0.005 (2)0.010 (2)−0.003 (2)
C60.045 (3)0.057 (3)0.062 (3)−0.004 (2)0.010 (2)0.002 (2)
O20.123 (7)0.082 (5)0.125 (7)−0.002 (5)0.063 (6)0.020 (5)
O30.098 (7)0.104 (6)0.148 (8)−0.010 (6)0.068 (7)−0.018 (6)
O40.072 (5)0.074 (5)0.107 (6)0.006 (4)0.018 (5)−0.014 (4)
O50.166 (11)0.162 (9)0.137 (9)−0.001 (9)−0.001 (8)−0.008 (8)
Ag—N1i2.138 (5)C2—H20.9300
Ag—N12.138 (5)C3—C41.402 (8)
Ag—O22.843 (9)C3—H30.9300
O1—N21.387 (7)C4—C51.378 (7)
O1—H1o0.8400C4—C61.449 (8)
N1—C11.327 (7)C5—H50.9300
N1—C51.346 (7)C6—H60.9300
N2—C61.255 (7)Cl—O51.283 (7)
C1—C21.374 (9)Cl—O31.426 (7)
C1—H10.9300Cl—O41.474 (6)
C2—C31.357 (8)Cl—O21.490 (6)
N1i—Ag—N1170.0 (2)C5—C4—C3117.1 (5)
N1i—Ag—O295.1 (3)C5—C4—C6118.6 (5)
N1—Ag—O294.2 (3)C3—C4—C6124.3 (5)
N2—O1—H1o109.5N1—C5—C4124.0 (5)
C1—N1—C5117.2 (5)N1—C5—H5118.0
C1—N1—Ag124.1 (4)C4—C5—H5118.0
C5—N1—Ag118.6 (3)N2—C6—C4122.0 (5)
C6—N2—O1112.5 (5)N2—C6—H6119.0
N1—C1—C2122.9 (5)C4—C6—H6119.0
N1—C1—H1118.6O5—Cl—O3120.9 (7)
C2—C1—H1118.6O5—Cl—O4114.9 (7)
C3—C2—C1119.8 (5)O3—Cl—O4103.4 (5)
C3—C2—H2120.1O5—Cl—O2113.4 (7)
C1—C2—H2120.1O3—Cl—O2101.3 (5)
C2—C3—C4119.1 (5)O4—Cl—O2100.0 (5)
C2—C3—H3120.5Cl—O2—Ag117.8 (5)
C4—C3—H3120.5
N1i—Ag—N1—C1168.7 (5)Ag—N1—C5—C4178.7 (4)
O2—Ag—N1—C19.2 (5)C3—C4—C5—N1−0.4 (8)
N1i—Ag—N1—C5−9.2 (4)C6—C4—C5—N1−177.8 (5)
O2—Ag—N1—C5−168.7 (4)O1—N2—C6—C4−178.7 (5)
C5—N1—C1—C2−0.7 (9)C5—C4—C6—N2175.0 (5)
Ag—N1—C1—C2−178.7 (5)C3—C4—C6—N2−2.3 (9)
N1—C1—C2—C30.5 (10)O5—Cl—O2—Ag−57.3 (9)
C1—C2—C3—C4−0.2 (9)O3—Cl—O2—Ag73.9 (7)
C2—C3—C4—C50.1 (8)O4—Cl—O2—Ag179.9 (5)
C2—C3—C4—C6177.4 (5)N1—Ag—O2—Cl−93.0 (6)
C1—N1—C5—C40.7 (8)
D—H···AD—HH···AD···AD—H···A
O1—H1o···N2ii0.842.072.821 (7)148
Table 1

Selected bond lengths (Å)

Ag—N12.138 (5)
Ag—O22.843 (9)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1o⋯N2i0.842.072.821 (7)148

Symmetry code: (i) .

  3 in total

1.  Synthesis, crystal structure, quantum chemical calculations, DNA interactions, and antimicrobial activity of [Ag(2-amino-3-methylpyridine)(2)]NO(3) and [Ag(pyridine-2-carboxaldoxime)NO(3)].

Authors:  Morsy A M Abu-Youssef; Saied M Soliman; Vratislav Langer; Yousry M Gohar; Ahmed A Hasanen; Mohamed A Makhyoun; Amira H Zaky; Lars R Öhrström
Journal:  Inorg Chem       Date:  2010-11-01       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  [(E)-Oxido(pyridin-2-yl-methyl-idene)amine-κ(2)N,N'][(E)-N-(pyridin-2-yl-methyl-idene)hydroxyl-amine-κ(2)N,N']silver(I) perchlorate-bis-[(E)-N-(pyridin-2-yl-methyl-idene)hydroxyl-amine-κ(2)N,N']silver(I) (1/1).

Authors:  Jing Xu; Shan Gao; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21
  3 in total
  1 in total

1.  Bis[μ-(E)-N-(pyridin-3-yl-methyl-idene)hy-droxy-amine]-κ(2) N (1):N (3);κ(2) N (3):N (1)-bis-{[(E)-N-(pyridin-3-yl-methyl-idene-κN)hy-droxy-amine]-silver(I)} dinitrate.

Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-28
  1 in total

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