Literature DB >> 22003379

Paleovirology - ghosts and gifts of viruses past.

Maulik R Patel1, Michael Emerman, Harmit S Malik.   

Abstract

The emerging field of paleovirology aims to study the evolutionary age and impact of ancient viruses (paleoviruses) on host biology. Despite a historical emphasis on retroviruses, paleoviral 'fossils' have recently been uncovered from a broad swathe of viruses. These viral imprints have upended long-held notions of the age and mutation rate of viruses. While 'direct' paleovirology relies on the insertion of viral genes in animal genomes, examination of adaptive changes in host genes that occurred in response to paleoviral infections provides a complementary strategy for making 'indirect' paleovirological inferences. Finally, viruses have also impacted host biology by providing genes hosts have domesticated for their own purpose.

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Year:  2011        PMID: 22003379      PMCID: PMC3190193          DOI: 10.1016/j.coviro.2011.06.007

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  34 in total

Review 1.  Evolution of the herpesviruses.

Authors:  Andrew J Davison
Journal:  Vet Microbiol       Date:  2002-04-22       Impact factor: 3.293

2.  Structural and functional analysis of prehistoric lentiviruses uncovers an ancient molecular interface.

Authors:  David C Goldstone; Melvyn W Yap; Laura E Robertson; Lesley F Haire; William R Taylor; Aris Katzourakis; Jonathan P Stoye; Ian A Taylor
Journal:  Cell Host Microbe       Date:  2010-09-16       Impact factor: 21.023

3.  Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain.

Authors:  Sara L Sawyer; Lily I Wu; Michael Emerman; Harmit S Malik
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-02       Impact factor: 11.205

4.  Retroviral invasion of the koala genome.

Authors:  Rachael E Tarlinton; Joanne Meers; Paul R Young
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

5.  Discovery and characterization of mammalian endogenous parvoviruses.

Authors:  Amit Kapoor; Peter Simmonds; W Ian Lipkin
Journal:  J Virol       Date:  2010-10-13       Impact factor: 5.103

6.  Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements.

Authors:  Marie Dewannieux; Francis Harper; Aurélien Richaud; Claire Letzelter; David Ribet; Gérard Pierron; Thierry Heidmann
Journal:  Genome Res       Date:  2006-10-31       Impact factor: 9.043

7.  Sharing of endogenous lentiviral gene fragments among leporid lineages separated for more than 12 million years.

Authors:  W van der Loo; J Abrantes; P J Esteves
Journal:  J Virol       Date:  2008-12-24       Impact factor: 5.103

8.  Filoviruses are ancient and integrated into mammalian genomes.

Authors:  Derek J Taylor; Robert W Leach; Jeremy Bruenn
Journal:  BMC Evol Biol       Date:  2010-06-22       Impact factor: 3.260

9.  Protein kinase R reveals an evolutionary model for defeating viral mimicry.

Authors:  Nels C Elde; Stephanie J Child; Adam P Geballe; Harmit S Malik
Journal:  Nature       Date:  2008-11-30       Impact factor: 49.962

10.  Identification of a RELIK orthologue in the European hare (Lepus europaeus) reveals a minimum age of 12 million years for the lagomorph lentiviruses.

Authors:  Z Keckesova; L M J Ylinen; G J Towers; R J Gifford; A Katzourakis
Journal:  Virology       Date:  2008-12-13       Impact factor: 3.616

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  51 in total

1.  Retroviruses push the envelope for mammalian placentation.

Authors:  Harmit Singh Malik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-26       Impact factor: 11.205

Review 2.  Endogenous viruses: insights into viral evolution and impact on host biology.

Authors:  Cédric Feschotte; Clément Gilbert
Journal:  Nat Rev Genet       Date:  2012-03-16       Impact factor: 53.242

3.  Evolutionary and functional analyses of the interaction between the myeloid restriction factor SAMHD1 and the lentiviral Vpx protein.

Authors:  Nadine Laguette; Nadia Rahm; Bijan Sobhian; Christine Chable-Bessia; Jan Münch; Joke Snoeck; Daniel Sauter; William M Switzer; Walid Heneine; Frank Kirchhoff; Frédéric Delsuc; Amalio Telenti; Monsef Benkirane
Journal:  Cell Host Microbe       Date:  2012-02-01       Impact factor: 21.023

4.  Natural mummification of the human gut preserves bacteriophage DNA.

Authors:  Tasha M Santiago-Rodriguez; Gino Fornaciari; Stefania Luciani; Scot E Dowd; Gary A Toranzos; Isolina Marota; Raul J Cano
Journal:  FEMS Microbiol Lett       Date:  2015-11-11       Impact factor: 2.742

5.  Virophages go nuclear in the marine alga Bigelowiella natans.

Authors:  Matthias G Fischer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-01       Impact factor: 11.205

6.  Paleovirology: inferring viral evolution from host genome sequence data.

Authors:  Aris Katzourakis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-08-12       Impact factor: 6.237

7.  Discovery and evolution of bunyavirids in arctic phantom midges and ancient bunyavirid-like sequences in insect genomes.

Authors:  Matthew J Ballinger; Jeremy A Bruenn; John Hay; Donna Czechowski; Derek J Taylor
Journal:  J Virol       Date:  2014-05-21       Impact factor: 5.103

8.  The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses.

Authors:  Alexander Suh; Jürgen Brosius; Jürgen Schmitz; Jan Ole Kriegs
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Freezing viruses in time.

Authors:  Edward C Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-17       Impact factor: 11.205

Review 10.  Genetic conflicts: the usual suspects and beyond.

Authors:  Richard N McLaughlin; Harmit S Malik
Journal:  J Exp Biol       Date:  2017-01-01       Impact factor: 3.312

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