Literature DB >> 2271679

Length of the acyl carbonyl bond in acyl-serine proteases correlates with reactivity.

P J Tonge1, P R Carey.   

Abstract

Resonance Raman (RR) spectroscopy has been used to obtain the vibrational spectrum of the acyl carbonyl group in a series of acylchymotrypsins and acylsubtilisins at the pH of optimum hydrolysis. The acyl-enzymes, which utilize arylacryloyl acyl groups, include three oxyanion hole mutants of subtilisin BPN', Asn155Leu, Asn155Gln, and Asn155Arg, and encompass a 500-fold range of deacylation rate constants. For each acyl-enzyme a RR carbonyl band has been identified which arises from a population of carbonyl groups undergoing nucleophilic attack in the active site. As the deacylation rate (k3) increases through the series of acyl-enzymes, the carbonyl stretching band (vC = O) is observed to shift to lower frequency, indicating an increase in single bond character of the reactive acyl carbonyl group. Experiments involving the oxyanion hole mutants of subtilisin BPN' indicate that a shift of vC = O to lower frequency results from stronger hydrogen bonding of the acyl carbonyl group in the oxyanion hole. A plot of log k3 against vC = O is linear over the range investigated, demonstrating that the changes in vC = O correlate with the free energy of activation for the deacylation reaction. By use of an empirical correlation between carbonyl frequency (vC = O) and carbonyl bond length (rC = O) it is estimated that rC = O increases by 0.015 A as the deacylation rate increases 500-fold through the series of acyl-enzymes. This change in rC = O is about 7% of that expected for going from a formal C = O double bond in the acyl-enzyme to a formal C-O single bond in the tetrahedral intermediate for deacylation. The data also allow us to estimate the energy needed to extend the acyl carbonyl group along its axis to be 950 kJ mol-1 A-1.

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Year:  1990        PMID: 2271679     DOI: 10.1021/bi00500a002

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  A 13C-NMR study of the role of Asn-155 in stabilizing the oxyanion of a subtilisin tetrahedral adduct.

Authors:  T P O'connell; R M Day; E V Torchilin; W W Bachovchin; J G Malthouse
Journal:  Biochem J       Date:  1997-09-15       Impact factor: 3.857

2.  Effect of specificity on ligand conformation in acyl-chymotrypsins.

Authors:  S S Johal; A J White; C W Wharton
Journal:  Biochem J       Date:  1994-01-15       Impact factor: 3.857

3.  Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.

Authors:  Samuel H Schneider; Steven G Boxer
Journal:  J Phys Chem B       Date:  2016-08-31       Impact factor: 2.991

4.  Poliovirus RNA-dependent RNA polymerase (3Dpol): pre-steady-state kinetic analysis of ribonucleotide incorporation in the presence of Mn2+.

Authors:  Jamie J Arnold; David W Gohara; Craig E Cameron
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

5.  Analysis and elimination of protein perturbation in infrared difference spectra of acyl-chymotrypsin ester carbonyl groups by using 13C isotopic substitution.

Authors:  A J White; K Drabble; S Ward; C W Wharton
Journal:  Biochem J       Date:  1992-10-01       Impact factor: 3.857

6.  Detecting a quasi-stable imine species on the reaction pathway of SHV-1 β-lactamase and 6β-(hydroxymethyl)penicillanic acid sulfone.

Authors:  Tao Che; Elizabeth A Rodkey; Christopher R Bethel; Sivaprakash Shanmugam; Zhe Ding; Marianne Pusztai-Carey; Michael Nottingham; Weirui Chai; John D Buynak; Robert A Bonomo; Focco van den Akker; Paul R Carey
Journal:  Biochemistry       Date:  2015-01-08       Impact factor: 3.162

7.  Probing the Hydrogen-Bonding Environment of Individual Bases in DNA Duplexes with Isotope-Edited Infrared Spectroscopy.

Authors:  Robert J Fick; Amy Y Liu; Felix Nussbaumer; Christoph Kreutz; Atul Rangadurai; Yu Xu; Roger D Sommer; Honglue Shi; Steve Scheiner; Allison L Stelling
Journal:  J Phys Chem B       Date:  2021-07-08       Impact factor: 2.991

  7 in total

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