Literature DB >> 22713901

The LaueUtil toolkit for Laue photocrystallography. II. Spot finding and integration.

Jarosław A Kalinowski1, Bertrand Fournier, Anna Makal, Philip Coppens.   

Abstract

A spot-integration method is described which does not require prior indexing of the reflections. It is based on statistical analysis of the values from each of the pixels on successive frames, followed for each frame by morphological analysis to identify clusters of high value pixels which form an appropriate mask corresponding to a reflection peak. The method does not require prior assumptions such as fitting of a profile or definition of an integration box. The results are compared with those of the seed-skewness method which is based on minimizing the skewness of the intensity distribution within a peak's integration box. Applications in Laue photocrystallography are presented.

Year:  2012        PMID: 22713901      PMCID: PMC3380659          DOI: 10.1107/S0909049512022637

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  10 in total

Review 1.  Time-resolved biochemical crystallography: a mechanistic perspective.

Authors:  K Moffat
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

2.  Chromophore conformation and the evolution of tertiary structural changes in photoactive yellow protein.

Authors:  Spencer Anderson; Vukica Srajer; Reinhard Pahl; Sudarshan Rajagopal; Friedrich Schotte; Philip Anfinrud; Michael Wulff; Keith Moffat
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

3.  The LaueUtil toolkit for Laue photocrystallography. I. Rapid orientation matrix determination for intermediate-size-unit-cell Laue data.

Authors:  Jarosław A Kalinowski; Anna Makal; Philip Coppens
Journal:  J Appl Crystallogr       Date:  2011-10-29       Impact factor: 3.304

4.  Time-resolved synchrotron diffraction and theoretical studies of very short-lived photo-induced molecular species.

Authors:  Philip Coppens; Jason Benedict; Marc Messerschmidt; Irina Novozhilova; Tim Graber; Yu-Sheng Chen; Ivan Vorontsov; Stephan Scheins; Shao-Liang Zheng
Journal:  Acta Crystallogr A       Date:  2010-02-18       Impact factor: 2.290

5.  Optimizing the accuracy and precision of the single-pulse Laue technique for synchrotron photo-crystallography.

Authors:  Radosław Kamiński; Timothy Graber; Jason B Benedict; Robert Henning; Yu Sheng Chen; Stephan Scheins; Marc Messerschmidt; Philip Coppens
Journal:  J Synchrotron Radiat       Date:  2010-05-29       Impact factor: 2.616

6.  Extraction of accurate structure-factor amplitudes from Laue data: wavelength normalization with wiggler and undulator X-ray sources.

Authors:  V Srajer; S Crosson; M Schmidt; J Key; F Schotte; S Anderson; B Perman; Z Ren; T Y Teng; D Bourgeois; M Wulff; K Moffat
Journal:  J Synchrotron Radiat       Date:  2000-07-01       Impact factor: 2.616

7.  The RATIO method for time-resolved Laue crystallography.

Authors:  Philip Coppens; Mateusz Pitak; Milan Gembicky; Marc Messerschmidt; Stephan Scheins; Jason Benedict; Shin Ichi Adachi; Tokushi Sato; Shunsuke Nozawa; Kohei Ichiyanagi; Matthieu Chollet; Shin Ya Koshihara
Journal:  J Synchrotron Radiat       Date:  2009-01-10       Impact factor: 2.616

8.  The development of Laue techniques for single-pulse diffraction of chemical complexes: time-resolved Laue diffraction on a binuclear rhodium metal-organic complex.

Authors:  Anna Makal; Elzbieta Trzop; Jesse Sokolow; Jaroslaw Kalinowski; Jason Benedict; Philip Coppens
Journal:  Acta Crystallogr A       Date:  2011-05-10       Impact factor: 2.290

9.  Ultrafast spin-state photoswitching in a crystal and slower consecutive processes investigated by femtosecond optical spectroscopy and picosecond X-ray diffraction.

Authors:  Eric Collet; Nicolas Moisan; Chérif Baldé; Roman Bertoni; Elzbieta Trzop; Claire Laulhé; Maciej Lorenc; Marina Servol; Hervé Cailleau; Antoine Tissot; Marie-Laure Boillot; Timothy Graber; Robert Henning; Philip Coppens; Marylise Buron-Le Cointe
Journal:  Phys Chem Chem Phys       Date:  2012-01-31       Impact factor: 3.676

10.  Time-resolved Laue diffraction of excited species at atomic resolution: 100 ps single-pulse diffraction of the excited state of the organometallic complex Rh2(μ-PNP)2(PNP)2·BPh4.

Authors:  Jason B Benedict; Anna Makal; Jesse D Sokolow; Elzbieta Trzop; Stephan Scheins; Robert Henning; Timothy Graber; Philip Coppens
Journal:  Chem Commun (Camb)       Date:  2011-01-06       Impact factor: 6.222

  10 in total
  6 in total

1.  Analysis of multicrystal pump-probe data sets. II. Scaling of ratio data sets.

Authors:  Bertrand Fournier; Jesse Sokolow; Philip Coppens
Journal:  Acta Crystallogr A Found Adv       Date:  2016-02-16       Impact factor: 2.290

2.  On the assessment of time-resolved diffraction results.

Authors:  Bertrand Fournier; Philip Coppens
Journal:  Acta Crystallogr A Found Adv       Date:  2014-05-02       Impact factor: 2.290

3.  Seed-skewness algorithm for X-ray diffraction signal detection in time-resolved synchrotron Laue photocrystallography.

Authors:  Dariusz Szarejko; Radosław Kamiński; Piotr Łaski; Katarzyna N Jarzembska
Journal:  J Synchrotron Radiat       Date:  2020-02-11       Impact factor: 2.616

4.  Shedding light on the photochemistry of coinage-metal phosphorescent materials: a time-resolved Laue diffraction study of an Ag(I)-Cu(I) tetranuclear complex.

Authors:  Katarzyna N Jarzembska; Radosław Kamiński; Bertrand Fournier; Elżbieta Trzop; Jesse D Sokolow; Robert Henning; Yang Chen; Philip Coppens
Journal:  Inorg Chem       Date:  2014-09-19       Impact factor: 5.165

5.  New methods in time-resolved Laue pump-probe crystallography at synchrotron sources.

Authors:  Philip Coppens; Bertrand Fournier
Journal:  J Synchrotron Radiat       Date:  2015-01-28       Impact factor: 2.616

6.  Exploring the structural changes on excitation of a luminescent organic bromine-substituted complex by in-house time-resolved pump-probe diffraction.

Authors:  Krishnayan Basuroy; Yang Chen; Sounak Sarkar; Jason Benedict; Philip Coppens
Journal:  Struct Dyn       Date:  2017-03-09       Impact factor: 2.920

  6 in total

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