Literature DB >> 31378315

Voltage-Dependent Profile Structures of a Kv-Channel via Time-Resolved Neutron Interferometry.

Andrey Y Tronin1, Lina J Maciunas2, Kimberly C Grasty2, Patrick J Loll2, Haile A Ambaye3, Andre A Parizzi3, Valeria Lauter3, Andrew D Geragotelis4, J Alfredo Freites4, Douglas J Tobias4, J Kent Blasie5.   

Abstract

Available experimental techniques cannot determine high-resolution three-dimensional structures of membrane proteins under a transmembrane voltage. Hence, the mechanism by which voltage-gated cation channels couple conformational changes within the four voltage sensor domains, in response to either depolarizing or polarizing transmembrane voltages, to opening or closing of the pore domain's ion channel remains unresolved. Single-membrane specimens, composed of a phospholipid bilayer containing a vectorially oriented voltage-gated K+ channel protein at high in-plane density tethered to the surface of an inorganic multilayer substrate, were developed to allow the application of transmembrane voltages in an electrochemical cell. Time-resolved neutron reflectivity experiments, enhanced by interferometry enabled by the multilayer substrate, were employed to provide directly the low-resolution profile structures of the membrane containing the vectorially oriented voltage-gated K+ channel for the activated, open and deactivated, closed states of the channel under depolarizing and hyperpolarizing transmembrane voltages applied cyclically. The profile structures of these single membranes were dominated by the voltage-gated K+ channel protein because of the high in-plane density. Importantly, the use of neutrons allowed the determination of the voltage-dependent changes in both the profile structure of the membrane and the distribution of water within the profile structure. These two key experimental results were then compared to those predicted by three computational modeling approaches for the activated, open and deactivated, closed states of three different voltage-gated K+ channels in hydrated phospholipid bilayer membrane environments. Of the three modeling approaches investigated, only one state-of-the-art molecular dynamics simulation that directly predicted the response of a voltage-gated K+ channel within a phospholipid bilayer membrane to applied transmembrane voltages by utilizing very long trajectories was found to be in agreement with the two key experimental results provided by the time-resolved neutron interferometry experiments.
Copyright © 2019 Biophysical Society. All rights reserved.

Entities:  

Year:  2019        PMID: 31378315      PMCID: PMC6712512          DOI: 10.1016/j.bpj.2019.07.011

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  A strategy for identification and quantification of detergents frequently used in the purification of membrane proteins.

Authors:  Laura R Eriks; June A Mayor; Ronald S Kaplan
Journal:  Anal Biochem       Date:  2003-12-15       Impact factor: 3.365

2.  X-ray structure of a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Alice Lee; Jiayun Chen; Vanessa Ruta; Martine Cadene; Brian T Chait; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

3.  The principle of gating charge movement in a voltage-dependent K+ channel.

Authors:  Youxing Jiang; Vanessa Ruta; Jiayun Chen; Alice Lee; Roderick MacKinnon
Journal:  Nature       Date:  2003-05-01       Impact factor: 49.962

4.  A quantitative description of membrane current and its application to conduction and excitation in nerve.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-08       Impact factor: 5.182

5.  Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.

Authors:  Alexander D Mackerell; Michael Feig; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-08       Impact factor: 3.376

6.  Scalable molecular dynamics with NAMD.

Authors:  James C Phillips; Rosemary Braun; Wei Wang; James Gumbart; Emad Tajkhorshid; Elizabeth Villa; Christophe Chipot; Robert D Skeel; Laxmikant Kalé; Klaus Schulten
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

7.  Structure of the KvAP voltage-dependent K+ channel and its dependence on the lipid membrane.

Authors:  Seok-Yong Lee; Alice Lee; Jiayun Chen; Roderick MacKinnon
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-13       Impact factor: 11.205

8.  Crystal structure of a mammalian voltage-dependent Shaker family K+ channel.

Authors:  Stephen B Long; Ernest B Campbell; Roderick Mackinnon
Journal:  Science       Date:  2005-07-07       Impact factor: 47.728

9.  Hydration state of single cytochrome c monolayers on soft interfaces via neutron interferometry.

Authors:  L R Kneller; A M Edwards; C E Nordgren; J K Blasie; N F Berk; S Krueger; C F Majkrzak
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

10.  Calibrated measurement of gating-charge arginine displacement in the KvAP voltage-dependent K+ channel.

Authors:  Vanessa Ruta; Jiayun Chen; Roderick MacKinnon
Journal:  Cell       Date:  2005-11-04       Impact factor: 41.582

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  2 in total

1.  Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations.

Authors:  Andrew D Geragotelis; Mona L Wood; Hendrik Göddeke; Liang Hong; Parker D Webster; Eric K Wong; J Alfredo Freites; Francesco Tombola; Douglas J Tobias
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

Review 2.  The Mechanism of Metal Homeostasis in Plants: A New View on the Synergistic Regulation Pathway of Membrane Proteins, Lipids and Metal Ions.

Authors:  Danxia Wu; Muhammad Saleem; Tengbing He; Guandi He
Journal:  Membranes (Basel)       Date:  2021-12-15
  2 in total

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