Literature DB >> 22705839

Genetic bioaugmentation as an effective method for in situ bioremediation: functionality of catabolic plasmids following conjugal transfers.

Kaoru Ikuma1, Claudia K Gunsch.   

Abstract

Genetic bioaugmentation is an in situ bioremediation method that stimulates horizontal transfer of catabolic plasmids between exogenous donor cells and indigenous bacteria to increase the biodegradation potential of contaminants. A critical outcome of genetic bioaugmentation is the expression of an active catabolic phenotype upon plasmid conjugation. Using a pWW0-derivative TOL plasmid, we showed that certain genetic characteristics of the recipient bacteria, including genomic guanine-cytosine (G + C) content and phylogeny, may limit the expression of the transferred catabolic pathway. However, such genetic limitations observed in transconjugants could be overcome by the presence of an additional carbon source. Glucose and Luria-Bertani broth were shown to enhance the toluene degradation rates of transconjugants; these enhancement effects were dependent on transconjugant genomic G + C contents. Based on these observations, thorough genetic characterization of the indigenous microbial community in the contaminated environment of interest may provide a predictive tool for assessing the success of genetic bioaugmentation.

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Year:  2012        PMID: 22705839      PMCID: PMC3476876          DOI: 10.4161/bioe.20551

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  17 in total

1.  Effect of carbon source addition on toluene biodegradation by an Escherichia coli DH5alpha transconjugant harboring the TOL plasmid.

Authors:  Kaoru Ikuma; Claudia Gunsch
Journal:  Biotechnol Bioeng       Date:  2010-10-01       Impact factor: 4.530

Review 2.  Horizontal gene transfer, genome innovation and evolution.

Authors:  J Peter Gogarten; Jeffrey P Townsend
Journal:  Nat Rev Microbiol       Date:  2005-09       Impact factor: 60.633

3.  Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters.

Authors:  Eva M Top; Dirk Springael; Nico Boon
Journal:  FEMS Microbiol Ecol       Date:  2002-11-01       Impact factor: 4.194

4.  Functionality of the TOL plasmid under varying environmental conditions following conjugal transfer.

Authors:  Kaoru Ikuma; Claudia K Gunsch
Journal:  Appl Microbiol Biotechnol       Date:  2012-02-26       Impact factor: 4.813

5.  Establishment of new genetic traits in a microbial biofilm community.

Authors:  B B Christensen; C Sternberg; J B Andersen; L Eberl; S Moller; M Givskov; S Molin
Journal:  Appl Environ Microbiol       Date:  1998-06       Impact factor: 4.792

6.  Gene transfer of Alcaligenes eutrophus JMP134 plasmid pJP4 to indigenous soil recipients.

Authors:  G D DiGiovanni; J W Neilson; I L Pepper; N A Sinclair
Journal:  Appl Environ Microbiol       Date:  1996-07       Impact factor: 4.792

7.  TOL is a broad-host-range plasmid.

Authors:  S Benson; J Shapiro
Journal:  J Bacteriol       Date:  1978-07       Impact factor: 3.490

8.  Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media.

Authors:  H Tao; C Bausch; C Richmond; F R Blattner; T Conway
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

9.  Estimation of bacterial species phylogeny through oligonucleotide frequency distances.

Authors:  Mahoko Takahashi; Kirill Kryukov; Naruya Saitou
Journal:  Genomics       Date:  2009-02-12       Impact factor: 5.736

10.  Frequency of horizontal gene transfer of a large catabolic plasmid (pJP4) in soil.

Authors:  J W Neilson; K L Josephson; I L Pepper; R B Arnold; G D Di Giovanni; N A Sinclair
Journal:  Appl Environ Microbiol       Date:  1994-11       Impact factor: 4.792

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  9 in total

1.  Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes.

Authors:  J Pivetal; M Frénéa-Robin; N Haddour; C Vézy; L F Zanini; G Ciuta; N M Dempsey; F Dumas-Bouchiat; G Reyne; S Bégin-Colin; D Felder-Flesh; C Ghobril; G Pourroy; P Simonet
Journal:  Environ Sci Pollut Res Int       Date:  2015-12       Impact factor: 4.223

Review 2.  Examining horizontal gene transfer in microbial communities.

Authors:  Ilana Lauren Brito
Journal:  Nat Rev Microbiol       Date:  2021-04-12       Impact factor: 60.633

3.  Enhanced plasmid-mediated bioaugmentation of RDX-contaminated matrices in column studies using donor strain Gordonia sp. KTR9.

Authors:  Carina M Jung; Matthew Carr; G Alon Blakeney; Karl J Indest
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-22       Impact factor: 3.346

Review 4.  Endophytic Phytoaugmentation: Treating Wastewater and Runoff Through Augmented Phytoremediation.

Authors:  Lauren K Redfern; Claudia K Gunsch
Journal:  Ind Biotechnol (New Rochelle N Y)       Date:  2016-04-01

5.  A new framework for approaching precision bioremediation of PAH contaminated soils.

Authors:  Lauren K Redfern; Courtney M Gardner; Emina Hodzic; P Lee Ferguson; Helen Hsu-Kim; Claudia K Gunsch
Journal:  J Hazard Mater       Date:  2019-07-02       Impact factor: 10.588

Review 6.  Properties affecting transfer and expression of degradative plasmids for the purpose of bioremediation.

Authors:  Paige M Varner; Claudia K Gunsch
Journal:  Biodegradation       Date:  2021-05-27       Impact factor: 3.909

Review 7.  Plasmid-Mediated Bioaugmentation for the Bioremediation of Contaminated Soils.

Authors:  Carlos Garbisu; Olatz Garaiyurrebaso; Lur Epelde; Elisabeth Grohmann; Itziar Alkorta
Journal:  Front Microbiol       Date:  2017-10-09       Impact factor: 5.640

Review 8.  Antibiotics: An overview on the environmental occurrence, toxicity, degradation, and removal methods.

Authors:  Qiulian Yang; Yuan Gao; Jian Ke; Pau Loke Show; Yuhui Ge; Yanhua Liu; Ruixin Guo; Jianqiu Chen
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

9.  Bioremediation potential of glyphosate-degrading microorganisms in eutrophicated Ecuadorian water bodies.

Authors:  Fernanda Hernández-Alomia; Isabel Ballesteros; Pablo Castillejo
Journal:  Saudi J Biol Sci       Date:  2021-11-12       Impact factor: 4.219

  9 in total

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