Literature DB >> 22697566

Adsorption-driven translocation of polymer chain into nanopores.

Shuang Yang1, Alexander V Neimark.   

Abstract

The polymer translocation into nanopores is generally facilitated by external driving forces, such as electric or hydrodynamic fields, to compensate for entropic restrictions imposed by the confinement. We investigate the dynamics of translocation driven by polymer adsorption to the confining walls that is relevant to chromatographic separation of macromolecules. By using the self-consistent field theory, we study the passage of a chain trough a small opening from cis to trans compartments of spherical shape with adsorption potential applied in the trans compartment. The chain transfer is modeled as the Fokker-Plank diffusion along the free energy landscape of the translocation pass represented as a sum of the free energies of cis and trans parts of the chain tethered to the pore opening. We investigate how the chain length, the size of trans compartment, the magnitude of adsorption potential, and the extent of excluded volume interactions affect the translocation time and its distribution. Interplay of these factors brings about a variety of different translocation regimes. We show that excluded volume interactions within a certain range of adsorption potentials can cause a local minimum on the free energy landscape, which is absent for ideal chains. The adsorption potential always leads to the decrease of the free energy barrier, increasing the probability of successful translocation. However, the translocation time depends non-monotonically of the magnitude of adsorption potential. Our calculations predict the existence of the critical magnitude of adsorption potential, which separates favorable and unfavorable regimes of translocation.

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Year:  2012        PMID: 22697566     DOI: 10.1063/1.4720505

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Conformation-dependent translocation of a star polymer through a nanochannel.

Authors:  Zhu Liu; Jiannan Liu; Mengying Xiao; Rong Wang; Yeng-Long Chen
Journal:  Biomicrofluidics       Date:  2014-09-10       Impact factor: 2.800

2.  Free energy calculations shed light on the nuclear pore complex's selective barrier nature.

Authors:  Atsushi Matsuda; Mohammad R K Mofrad
Journal:  Biophys J       Date:  2021-07-31       Impact factor: 3.699

3.  Vesicle Geometries Enabled by Semiflexible Polymer.

Authors:  Ping Li; Nianqiang Kang; Aihua Chai; Dan Lu; Shuiping Luo; Zhiyong Yang
Journal:  Polymers (Basel)       Date:  2022-02-15       Impact factor: 4.329

4.  A general theory of polymer ejection tested in a quasi two-dimensional space.

Authors:  Pai-Yi Hsiao; Wei-Yei Chen
Journal:  Sci Rep       Date:  2021-07-19       Impact factor: 4.379

  4 in total

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