Literature DB >> 22694875

Analytical tools for characterizing heterogeneity in organelle content.

Robbyn K Anand1, Daniel T Chiu.   

Abstract

Heterogeneity in the content and function of subcellular organelles on the intercellular and intracellular level plays an important role in determining cell fate. These variations extend to normal-state and disease-state cellular functions and responses to environmental stimuli, such as oxidative stress and therapeutic drugs. Analytical tools to characterize variation in all types of organelles are essential to provide insights that can lead to advances in medicine, such as therapies targeted to specific subcellular regions. In this review, we discuss analytical techniques for interrogating individual intact organelles (e.g. mitochondria and synaptic vesicles) and lysates in a high-throughput manner, including a recently developed nanoscale fluorescence-activated subcellular sorter and techniques based on capillary electrophoresis with laser-induced fluorescence detection. We then highlight the advantages that droplet microfluidics offers for probing subcellular heterogeneity. Published by Elsevier Ltd.

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Year:  2012        PMID: 22694875      PMCID: PMC3424364          DOI: 10.1016/j.cbpa.2012.05.187

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  37 in total

1.  Analysis of the bioactivity of magnetically immunoisolated peroxisomes.

Authors:  Yaohua Wang; Thane H Taylor; Edgar A Arriaga
Journal:  Anal Bioanal Chem       Date:  2011-11-08       Impact factor: 4.142

2.  Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity.

Authors:  Jean-Christophe Baret; Oliver J Miller; Valerie Taly; Michaël Ryckelynck; Abdeslam El-Harrak; Lucas Frenz; Christian Rick; Michael L Samuels; J Brian Hutchison; Jeremy J Agresti; Darren R Link; David A Weitz; Andrew D Griffiths
Journal:  Lab Chip       Date:  2009-04-23       Impact factor: 6.799

Review 3.  The implications of mitochondrial DNA copy number regulation during embryogenesis.

Authors:  Phillippa J Carling; Lynsey M Cree; Patrick F Chinnery
Journal:  Mitochondrion       Date:  2011-05-27       Impact factor: 4.160

4.  Rapid and label-free screening of enzyme inhibitors using segmented flow electrospray ionization mass spectrometry.

Authors:  Jian Pei; Qiang Li; Robert T Kennedy
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-10       Impact factor: 3.109

5.  High-throughput microfluidic single-cell RT-qPCR.

Authors:  Adam K White; Michael VanInsberghe; Oleh I Petriv; Mani Hamidi; Darek Sikorski; Marco A Marra; James Piret; Samuel Aparicio; Carl L Hansen
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-01       Impact factor: 11.205

6.  Determining the number of specific proteins in cellular compartments by quantitative microscopy.

Authors:  Sarah A Mutch; Jennifer C Gadd; Bryant S Fujimoto; Patricia Kensel-Hammes; Perry G Schiro; Sandra M Bajjalieh; Daniel T Chiu
Journal:  Nat Protoc       Date:  2011-11-17       Impact factor: 13.491

7.  High throughput single cell bioinformatics.

Authors:  Kenneth L Roach; Kevin R King; Basak E Uygun; Isaac S Kohane; Martin L Yarmush; Mehmet Toner
Journal:  Biotechnol Prog       Date:  2009 Nov-Dec

8.  Droplet microfluidic technology for single-cell high-throughput screening.

Authors:  Eric Brouzes; Martina Medkova; Neal Savenelli; Dave Marran; Mariusz Twardowski; J Brian Hutchison; Jonathan M Rothberg; Darren R Link; Norbert Perrimon; Michael L Samuels
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-15       Impact factor: 11.205

Review 9.  Genomic analysis at the single-cell level.

Authors:  Tomer Kalisky; Paul Blainey; Stephen R Quake
Journal:  Annu Rev Genet       Date:  2011-09-19       Impact factor: 16.830

Review 10.  Heterogeneity of mitochondria and mitochondrial function within cells as another level of mitochondrial complexity.

Authors:  Andrey V Kuznetsov; Raimund Margreiter
Journal:  Int J Mol Sci       Date:  2009-04-24       Impact factor: 6.208

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  6 in total

1.  Analysis of individual mitochondria via fluorescent immunolabeling with Anti-TOM22 antibodies.

Authors:  Thane H Taylor; Nicholas W Frost; Michael T Bowser; Edgar A Arriaga
Journal:  Anal Bioanal Chem       Date:  2014-01-31       Impact factor: 4.142

2.  Nanofluidic platform for single mitochondria analysis using fluorescence microscopy.

Authors:  Katayoun Zand; Ted Pham; Antonio Davila; Douglas C Wallace; Peter J Burke
Journal:  Anal Chem       Date:  2013-05-31       Impact factor: 6.986

3.  Phenotypic drug profiling in droplet microfluidics for better targeting of drug-resistant tumors.

Authors:  S Sarkar; N Cohen; P Sabhachandani; T Konry
Journal:  Lab Chip       Date:  2015-12-07       Impact factor: 6.799

Review 4.  Micro- and Nano-Devices for Studying Subcellular Biology.

Authors:  Michael J Siedlik; Zijian Yang; Parnika S Kadam; James Eberwine; David Issadore
Journal:  Small       Date:  2020-12-20       Impact factor: 13.281

5.  Single-cell measurements of IgE-mediated FcεRI signaling using an integrated microfluidic platform.

Authors:  Yanli Liu; Dipak Barua; Peng Liu; Bridget S Wilson; Janet M Oliver; William S Hlavacek; Anup K Singh
Journal:  PLoS One       Date:  2013-03-27       Impact factor: 3.240

6.  A subcellular cookie cutter for spatial genomics in human tissue.

Authors:  Alexander G Bury; Angela Pyle; Fabio Marcuccio; Doug M Turnbull; Amy E Vincent; Gavin Hudson; Paolo Actis
Journal:  Anal Bioanal Chem       Date:  2022-03-02       Impact factor: 4.478

  6 in total

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