Literature DB >> 22689235

Draft genome sequence of Rhodococcus sp. strain P14, a biodegrader of high-molecular-weight polycyclic aromatic hydrocarbons.

Ying Zhang1, Fujun Qin, Jing Qiao, Gangmin Li, Chenghui Shen, Tongwang Huang, Zhong Hu.   

Abstract

The genus Rhodococcus is known for its ability to degrade various xenobiotic compounds. Rhodococcus sp. strain P14 isolated from crude oil-contaminated sediments can degrade mineral oil and polycyclic aromatic hydrocarbons (PAHs). The draft genome sequence of Rhodococcus sp. P14 was obtained using Solexa technology, which provided an invaluable genetic background for further investigation of the ability of P14 to degrade xenobiotic compounds.

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Year:  2012        PMID： 22689235      PMCID： PMC3434724          DOI： 10.1128/JB.00555-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

Review 1.  Biodegradation of high-molecular-weight polycyclic aromatic hydrocarbons by bacteria.

Authors:  R A Kanaly; S Harayama
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

Review 2.  Biodegradation and Rhodococcus--masters of catabolic versatility.

Authors:  Michael J Larkin; Leonid A Kulakov; Christopher C R Allen
Journal:  Curr Opin Biotechnol       Date:  2005-06       Impact factor: 9.740

3.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  A novel phenanthrene dioxygenase from Nocardioides sp. Strain KP7: expression in Escherichia coli.

Authors:  A Saito; T Iwabuchi; S Harayama
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

6.  Genome sequence of Rhodococcus sp. strain R04, a polychlorinated-biphenyl biodegrader.

Authors:  Xiuqing Yang; Rui Xue; Chong Shen; Shuren Li; Chong Gao; Qi Wang; Xiaoxia Zhao
Journal:  J Bacteriol       Date:  2011-07-08       Impact factor: 3.490

7.  The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.

Authors:  Michael P McLeod; René L Warren; William W L Hsiao; Naoto Araki; Matthew Myhre; Clinton Fernandes; Daisuke Miyazawa; Wendy Wong; Anita L Lillquist; Dennis Wang; Manisha Dosanjh; Hirofumi Hara; Anca Petrescu; Ryan D Morin; George Yang; Jeff M Stott; Jacqueline E Schein; Heesun Shin; Duane Smailus; Asim S Siddiqui; Marco A Marra; Steven J M Jones; Robert Holt; Fiona S L Brinkman; Keisuke Miyauchi; Masao Fukuda; Julian E Davies; William W Mohn; Lindsay D Eltis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

8.  Isolation, characterization of Rhodococcus sp. P14 capable of degrading high-molecular-weight polycyclic aromatic hydrocarbons and aliphatic hydrocarbons.

Authors:  Xiaohui Song; Yan Xu; Gangmin Li; Ying Zhang; Tongwang Huang; Zhong Hu
Journal:  Mar Pollut Bull       Date:  2011-08-25       Impact factor: 5.553

Review 9.  Biodegradation potential of the genus Rhodococcus.

Authors:  Ludmila Martínková; Bronislava Uhnáková; Miroslav Pátek; Jan Nesvera; Vladimír Kren
Journal:  Environ Int       Date:  2008-09-11       Impact factor: 9.621

10.  KEGG for linking genomes to life and the environment.

Authors:  Minoru Kanehisa; Michihiro Araki; Susumu Goto; Masahiro Hattori; Mika Hirakawa; Masumi Itoh; Toshiaki Katayama; Shuichi Kawashima; Shujiro Okuda; Toshiaki Tokimatsu; Yoshihiro Yamanishi
Journal:  Nucleic Acids Res       Date:  2007-12-12       Impact factor: 16.971
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  7 in total

1.  Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Authors:  Natalia Bourguignon; Rafael Bargiela; David Rojo; Tatyana N Chernikova; Sara A López de Rodas; Jesús García-Cantalejo; Daniela J Näther; Peter N Golyshin; Coral Barbas; Marcela Ferrero; Manuel Ferrer
Journal:  World J Microbiol Biotechnol       Date:  2016-10-26       Impact factor: 3.312

2.  Genes and novel sRNAs involved in PAHs degradation in marine bacteria Rhodococcus sp. P14 revealed by the genome and transcriptome analysis.

Authors:  Tao Peng; Jie Kan; Jing Hu; Zhong Hu
Journal:  3 Biotech       Date:  2020-02-26       Impact factor: 2.406

3.  Evident bacterial community changes but only slight degradation when polluted with pyrene in a red soil.

Authors:  Gaidi Ren; Wenjie Ren; Ying Teng; Zhengao Li
Journal:  Front Microbiol       Date:  2015-01-30       Impact factor: 5.640

4.  Response of Rhodococcus erythropolis strain IBBPo1 to toxic organic solvents.

Authors:  Mihaela Marilena Stancu
Journal:  Braz J Microbiol       Date:  2015 Oct-Dec       Impact factor: 2.476

5.  NarL, a Novel Repressor for CYP108j1 Expression during PAHs Degradation in Rhodococcus sp. P14.

Authors:  Jie Kan; Tao Peng; Tongwang Huang; Guangming Xiong; Zhong Hu
Journal:  Int J Mol Sci       Date:  2020-02-01       Impact factor: 5.923

6.  Experimental and Genomic Evaluation of the Oestrogen Degrading Bacterium Rhodococcus equi ATCC13557.

Authors:  Sarah L Harthern-Flint; Jan Dolfing; Wojciech Mrozik; Paola Meynet; Lucy E Eland; Martin Sim; Russell J Davenport
Journal:  Front Microbiol       Date:  2021-07-01       Impact factor: 5.640

7.  Genome-Based Insights into the Production of Carotenoids by Antarctic Bacteria, Planococcus sp. ANT_H30 and Rhodococcus sp. ANT_H53B.

Authors:  Michal Styczynski; Agata Rogowska; Katarzyna Gieczewska; Maciej Garstka; Anna Szakiel; Lukasz Dziewit
Journal:  Molecules       Date:  2020-09-23       Impact factor: 4.411
  7 in total

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