Literature DB >> 21742862

Genome sequence of Rhodococcus sp. strain R04, a polychlorinated-biphenyl biodegrader.

Xiuqing Yang1, Rui Xue, Chong Shen, Shuren Li, Chong Gao, Qi Wang, Xiaoxia Zhao.   

Abstract

The genus Rhodococcus has proved to be a promising option for the cleanup of polluted sites and application of a microbial biocatalyst. Rhodococcus sp. strain R04, isolated from oil-contaminated soil, can biodegrade polychlorinated biphenyls. Here we report the draft genome sequence of Rhodococcus sp. strain R04, which could be used to predict genes for xenobiotic biodegradation and provide important insights into the applications of this strain.
Copyright © 2011, American Society for Microbiology. All Rights Reserved.

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Year:  2011        PMID： 21742862      PMCID： PMC3165690          DOI： 10.1128/JB.05635-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Substrate preferences in biodesulfurization of diesel range fuels by Rhodococcus sp. strain ECRD-1.

Authors:  Roger C Prince; Matthew J Grossman
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  Unmarked gene deletion mutagenesis of kstD, encoding 3-ketosteroid Delta1-dehydrogenase, in Rhodococcus erythropolis SQ1 using sacB as counter-selectable marker.

Authors:  R van der Geize; G I Hessels; R van Gerwen; P van der Meijden; L Dijkhuizen
Journal:  FEMS Microbiol Lett       Date:  2001-12-18       Impact factor: 2.742

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Multiplicity of aromatic ring hydroxylation dioxygenase genes in a strong PCB degrader, Rhodococcus sp. strain RHA1 demonstrated by denaturing gradient gel electrophoresis.

Authors:  W Kitagawa; A Suzuki; T Hoaki; E Masai; M Fukuda
Journal:  Biosci Biotechnol Biochem       Date:  2001-08       Impact factor: 2.043

6.  Highly enantioselective synthesis of alpha,alpha-disubstituted malonamic acids through asymmetric hydrolysis of dinitriles with Rhodococcus sp. CGMCC 0497.

Authors:  Zhong-Liu Wu; Zu-Yi Li
Journal:  Chem Commun (Camb)       Date:  2003-02-07       Impact factor: 6.222

7.  Haloalkane degradation and assimilation by Rhodococcus rhodochrous NCIMB 13064.

Authors:  H Curragh; O Flynn; M J Larkin; T M Stafford; J T Hamilton; D B Harper
Journal:  Microbiology       Date:  1994-06       Impact factor: 2.777

8.  Metabolism of 2-mercaptobenzothiazole by Rhodococcus rhodochrous.

Authors:  Nicolas Haroune; Bruno Combourieu; Pascale Besse; Martine Sancelme; Achim Kloepfer; Thorsten Reemtsma; Heleen De Wever; Anne-Marie Delort
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  Characterization and functional analysis of a novel gene cluster involved in biphenyl degradation in Rhodococcus sp. strain R04.

Authors:  X Yang; X Liu; L Song; F Xie; G Zhang; S Qian
Journal:  J Appl Microbiol       Date:  2007-12       Impact factor: 3.772

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
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  5 in total

1.  Draft genome sequence of Rhodococcus sp. strain P14, a biodegrader of high-molecular-weight polycyclic aromatic hydrocarbons.

Authors:  Ying Zhang; Fujun Qin; Jing Qiao; Gangmin Li; Chenghui Shen; Tongwang Huang; Zhong Hu
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

2.  Insights into the degradation capacities of Amycolatopsis tucumanensis DSM 45259 guided by microarray data.

Authors:  Natalia Bourguignon; Rafael Bargiela; David Rojo; Tatyana N Chernikova; Sara A López de Rodas; Jesús García-Cantalejo; Daniela J Näther; Peter N Golyshin; Coral Barbas; Marcela Ferrero; Manuel Ferrer
Journal:  World J Microbiol Biotechnol       Date:  2016-10-26       Impact factor: 3.312

3.  De novo genome project for the aromatic degrader Rhodococcus pyridinivorans strain AK37.

Authors:  Balázs Kriszt; András Táncsics; Mátyás Cserháti; Ákos Tóth; István Nagy; Balázs Horváth; István Nagy; Tomohiro Tamura; József Kukolya; Sándor Szoboszlay
Journal:  J Bacteriol       Date:  2012-03       Impact factor: 3.490

4.  Whole-Genome Sequence of Aquamicrobium sp. Strain SK-2, a Polychlorinated Biphenyl-Utilizing Bacterium Isolated from Sewage Sludge.

Authors:  Young-Cheol Chang; Ken Sawada; Eun-Sook Kim; Kweon Jung; Shintaro Kikuchi
Journal:  Genome Announc       Date:  2015-05-14

5.  Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

Authors:  Masaki Shintani; Yoshiyuki Ohtsubo; Kohei Fukuda; Akira Hosoyama; Shoko Ohji; Atsushi Yamazoe; Nobuyuki Fujita; Yuji Nagata; Masataka Tsuda; Takashi Hatta; Kazuhide Kimbara
Journal:  Genome Announc       Date:  2014-01-23
  5 in total

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