Literature DB >> 22689232

Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144.

Sakiko Nagashima1, Akiko Kamimura, Takayuki Shimizu, Sanae Nakamura-Isaki, Eiji Aono, Koji Sakamoto, Natsuko Ichikawa, Hidekazu Nakazawa, Mitsuo Sekine, Shuji Yamazaki, Nobuyuki Fujita, Keizo Shimada, Satoshi Hanada, Kenji V P Nagashima.   

Abstract

Rubrivivax gelatinosus is a facultative photoheterotrophic betaproteobacterium living in freshwater ponds, sewage ditches, activated sludge, and food processing wastewater. There have not been many studies on photosynthetic betaproteobacteria. Here we announce the complete genome sequence of the best-studied phototrophic betaproteobacterium, R. gelatinosus IL-144 (NBRC 100245).

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Year:  2012        PMID： 22689232      PMCID： PMC3434721          DOI： 10.1128/JB.00511-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  5 in total

1.  Horizontal transfer of the photosynthesis gene cluster and operon rearrangement in purple bacteria.

Authors:  N Igarashi; J Harada; S Nagashima; K Matsuura; K Shimada; K V Nagashima
Journal:  J Mol Evol       Date:  2001-04       Impact factor: 2.395

2.  The cytochrome c₈ involved in the nitrite reduction pathway acts also as electron donor to the photosynthetic reaction center in Rubrivivax gelatinosus.

Authors:  Sakiko Nagashima; Keizo Shimada; André Verméglio; Kenji V P Nagashima
Journal:  Biochim Biophys Acta       Date:  2010-11-02

3.  Horizontal transfer of genes coding for the photosynthetic reaction centers of purple bacteria.

Authors:  K V Nagashima; A Hiraishi; K Shimada; K Matsuura
Journal:  J Mol Evol       Date:  1997-08       Impact factor: 2.395

4.  CtpA, a copper-translocating P-type ATPase involved in the biogenesis of multiple copper-requiring enzymes.

Authors:  Bahia Khalfaoui Hassani; Chantal Astier; Wolfgang Nitschke; Soufian Ouchane
Journal:  J Biol Chem       Date:  2010-04-02       Impact factor: 5.157

5.  Characterization of genes responsible for the CO-linked hydrogen production pathway in Rubrivivax gelatinosus.

Authors:  Gary Vanzin; Jianping Yu; Sharon Smolinski; Vekalet Tek; Grant Pennington; Pin-Ching Maness
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792
  5 in total
  13 in total

1.  Essential Genes Predicted in the Genome of Rubrivivax gelatinosus.

Authors:  Patrick D Curtis
Journal:  J Bacteriol       Date:  2016-07-28       Impact factor: 3.490

2.  The pathogen Batrachochytrium dendrobatidis disturbs the frog skin microbiome during a natural epidemic and experimental infection.

Authors:  Andrea J Jani; Cheryl J Briggs
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-10       Impact factor: 11.205

3.  Critical role for isoprenoids in apicoplast biogenesis by malaria parasites.

Authors:  Megan Okada; Krithika Rajaram; Russell P Swift; Amanda Mixon; John Alan Maschek; Sean T Prigge; Paul A Sigala
Journal:  Elife       Date:  2022-03-08       Impact factor: 8.140

4.  Functional type 2 photosynthetic reaction centers found in the rare bacterial phylum Gemmatimonadetes.

Authors:  Yonghui Zeng; Fuying Feng; Hana Medová; Jason Dean; Michal Koblížek
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

5.  Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes.

Authors:  Jatta Saarenheimo; Marja Annika Tiirola; Antti J Rissanen
Journal:  Front Microbiol       Date:  2015-07-01       Impact factor: 5.640

6.  Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.

Authors:  Karen Wawrousek; Scott Noble; Jonas Korlach; Jin Chen; Carrie Eckert; Jianping Yu; Pin-Ching Maness
Journal:  PLoS One       Date:  2014-12-05       Impact factor: 3.240

7.  The Metagenome of Utricularia gibba's Traps: Into the Microbial Input to a Carnivorous Plant.

Authors:  Luis David Alcaraz; Shamayim Martínez-Sánchez; Ignacio Torres; Enrique Ibarra-Laclette; Luis Herrera-Estrella
Journal:  PLoS One       Date:  2016-02-09       Impact factor: 3.240

8.  Effects of Temperature on the Characteristics of Nitrogen Removal and Microbial Community in Post Solid-Phase Denitrification Biofilter Process.

Authors:  Qian Zhang; Xue Chen; Wandong Luo; Heng Wu; Xiangyang Liu; Wang Chen; Jianhong Tang; Lijie Zhang
Journal:  Int J Environ Res Public Health       Date:  2019-11-13       Impact factor: 3.390

9.  Denitrifying bacterial communities affect current production and nitrous oxide accumulation in a microbial fuel cell.

Authors:  Ariadna Vilar-Sanz; Sebastià Puig; Arantzazu García-Lledó; Rosalia Trias; M Dolors Balaguer; Jesús Colprim; Lluís Bañeras
Journal:  PLoS One       Date:  2013-05-23       Impact factor: 3.240

10.  Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation.

Authors:  Erika Berenice Martínez-Ruiz; Myriel Cooper; Jimena Barrero-Canosa; Mindia A S Haryono; Irina Bessarab; Rohan B H Williams; Ulrich Szewzyk
Journal:  BMC Genomics       Date:  2021-06-22       Impact factor: 3.969
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