Literature DB >> 22688412

High-speed microbial community profiling.

Daniel H Haft, Andrey Tovchigrechko.   

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Year:  2012        PMID： 22688412     DOI： 10.1038/nmeth.2080

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

1.  Accurate phylogenetic classification of variable-length DNA fragments.

Authors:  Alice Carolyn McHardy; Héctor García Martín; Aristotelis Tsirigos; Philip Hugenholtz; Isidore Rigoutsos
Journal:  Nat Methods       Date:  2006-12-10       Impact factor: 28.547

2.  Metagenomic microbial community profiling using unique clade-specific marker genes.

Authors:  Nicola Segata; Levi Waldron; Annalisa Ballarini; Vagheesh Narasimhan; Olivier Jousson; Curtis Huttenhower
Journal:  Nat Methods       Date:  2012-06-10       Impact factor: 28.547

3.  Mixture models for analysis of the taxonomic composition of metagenomes.

Authors:  Peter Meinicke; Kathrin Petra Asshauer; Thomas Lingner
Journal:  Bioinformatics       Date:  2011-05-05       Impact factor: 6.937

4.  Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.

Authors:  Bo Liu; Theodore Gibbons; Mohammad Ghodsi; Todd Treangen; Mihai Pop
Journal:  BMC Genomics       Date:  2011-07-27       Impact factor: 3.969

5.  Accurate genome relative abundance estimation based on shotgun metagenomic reads.

Authors:  Li C Xia; Jacob A Cram; Ting Chen; Jed A Fuhrman; Fengzhu Sun
Journal:  PLoS One       Date:  2011-12-06       Impact factor: 3.240

6.  Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models.

Authors:  Arthur Brady; Steven L Salzberg
Journal:  Nat Methods       Date:  2009-08-02       Impact factor: 28.547
  6 in total
  11 in total

1.  Ecological succession and viability of human-associated microbiota on restroom surfaces.

Authors:  Sean M Gibbons; Tara Schwartz; Jennifer Fouquier; Michelle Mitchell; Naseer Sangwan; Jack A Gilbert; Scott T Kelley
Journal:  Appl Environ Microbiol       Date:  2014-11-14       Impact factor: 4.792

2.  Thermophilic Alkaline Fermentation Followed by Mesophilic Anaerobic Digestion for Efficient Hydrogen and Methane Production from Waste-Activated Sludge: Dynamics of Bacterial Pathogens as Revealed by the Combination of Metagenomic and Quantitative PCR Analyses.

Authors:  Jingjing Wan; Yuhang Jing; Yue Rao; Shicheng Zhang; Gang Luo
Journal:  Appl Environ Microbiol       Date:  2018-03-01       Impact factor: 4.792

Review 3.  Microbial fuel cells: a comprehensive review for beginners.

Authors:  A S Vishwanathan
Journal:  3 Biotech       Date:  2021-05-01       Impact factor: 2.406

4.  MetaStorm: A Public Resource for Customizable Metagenomics Annotation.

Authors:  Gustavo Arango-Argoty; Gargi Singh; Lenwood S Heath; Amy Pruden; Weidong Xiao; Liqing Zhang
Journal:  PLoS One       Date:  2016-09-15       Impact factor: 3.240

5.  MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation.

Authors:  David Koslicki; Daniel Falush
Journal:  mSystems       Date:  2016-06-07       Impact factor: 6.496

6.  Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!

Authors:  John Vollmers; Sandra Wiegand; Anne-Kristin Kaster
Journal:  PLoS One       Date:  2017-01-18       Impact factor: 3.240

7.  A fast and robust protocol for metataxonomic analysis using RNAseq data.

Authors:  Jeremy W Cox; Richard A Ballweg; Diana H Taft; Prakash Velayutham; David B Haslam; Aleksey Porollo
Journal:  Microbiome       Date:  2017-01-19       Impact factor: 14.650

8.  Metagenomic Analysis of Infectious F-Specific RNA Bacteriophage Strains in Wastewater Treatment and Disinfection Processes.

Authors:  Suntae Lee; Mamoru Suwa; Hiroyuki Shigemura
Journal:  Pathogens       Date:  2019-11-03

9.  PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples.

Authors:  Changjin Hong; Solaiappan Manimaran; Ying Shen; Joseph F Perez-Rogers; Allyson L Byrd; Eduardo Castro-Nallar; Keith A Crandall; William Evan Johnson
Journal:  Microbiome       Date:  2014-09-05       Impact factor: 14.650

Review 10.  Validation of high throughput sequencing and microbial forensics applications.

Authors:  Bruce Budowle; Nancy D Connell; Anna Bielecka-Oder; Rita R Colwell; Cindi R Corbett; Jacqueline Fletcher; Mats Forsman; Dana R Kadavy; Alemka Markotic; Stephen A Morse; Randall S Murch; Antti Sajantila; Sarah E Schmedes; Krista L Ternus; Stephen D Turner; Samuel Minot
Journal:  Investig Genet       Date:  2014-07-30
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