Literature DB >> 22684062

Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58.

Tomoko Mase1, Hideya Yabuki, Masahiko Okai, Jun Ohtsuka, Fabiana Lica Imai, Yuji Nagata, Masaru Tanokura.   

Abstract

Haloalkane dehalogenases are enzymes that catalyze the hydrolytic reaction of a wide variety of haloalkyl substrates to form the corresponding alcohol and hydrogen halide products. DatA from Agrobacterium tumefaciens C58 is a haloalkane dehalogenase that has a unique pair of halide-binding residues, asparagine (Asn43) and tyrosine (Tyr109), instead of the asparagine and tryptophan that are conserved in other members of the subfamily. DatA was expressed in Escherichia coli, purified and crystallized using the sitting-drop vapour-diffusion method with a reservoir solution consisting of 0.1 M CHES pH 8.6, 1.0 M potassium sodium tartrate, 0.2 M lithium sulfate, 0.01 M barium chloride. X-ray diffraction data were collected to 1.70 Å resolution. The space group of the crystal was determined as the primitive tetragonal space group P422, with unit-cell parameters a = b = 123.7, c = 88.1 Å. The crystal contained two molecules in the asymmetric unit.

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Year:  2012        PMID: 22684062      PMCID: PMC3370902          DOI: 10.1107/S1744309112013942

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  20 in total

1.  The alpha/beta hydrolase fold.

Authors:  D L Ollis; E Cheah; M Cygler; B Dijkstra; F Frolow; S M Franken; M Harel; S J Remington; I Silman; J Schrag
Journal:  Protein Eng       Date:  1992-04

Review 2.  Evolving haloalkane dehalogenases.

Authors:  Dick B Janssen
Journal:  Curr Opin Chem Biol       Date:  2004-04       Impact factor: 8.822

3.  Phylogenetic analysis of haloalkane dehalogenases.

Authors:  Eva Chovancová; Jan Kosinski; Janusz M Bujnicki; Jirí Damborský
Journal:  Proteins       Date:  2007-05-01

Review 4.  Biocatalysis by dehalogenating enzymes.

Authors:  Dick B Janssen
Journal:  Adv Appl Microbiol       Date:  2007       Impact factor: 5.086

5.  Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities.

Authors:  Yukari Sato; Marta Monincová; Radka Chaloupková; Zbynek Prokop; Yoshiyuki Ohtsubo; Kiwamu Minamisawa; Masataka Tsuda; Jirí Damborsky; Yuji Nagata
Journal:  Appl Environ Microbiol       Date:  2005-08       Impact factor: 4.792

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Replacement of tryptophan residues in haloalkane dehalogenase reduces halide binding and catalytic activity.

Authors:  C Kennes; F Pries; G H Krooshof; E Bokma; J Kingma; D B Janssen
Journal:  Eur J Biochem       Date:  1995-03-01

8.  Kinetic analysis and X-ray structure of haloalkane dehalogenase with a modified halide-binding site.

Authors:  G H Krooshof; I S Ridder; A W Tepper; G J Vos; H J Rozeboom; K H Kalk; B W Dijkstra; D B Janssen
Journal:  Biochemistry       Date:  1998-10-27       Impact factor: 3.162

9.  Kinetic characterization and X-ray structure of a mutant of haloalkane dehalogenase with higher catalytic activity and modified substrate range.

Authors:  J P Schanstra; I S Ridder; G J Heimeriks; R Rink; G J Poelarends; K H Kalk; B W Dijkstra; D B Janssen
Journal:  Biochemistry       Date:  1996-10-08       Impact factor: 3.162

10.  Exploring the binding sites of the haloalkane dehalogenase DhlA from Xanthobacter autotrophicus GJ10.

Authors:  Michael Silberstein; Jiri Damborsky; Sandor Vajda
Journal:  Biochemistry       Date:  2007-07-24       Impact factor: 3.162

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