Literature DB >> 22682253

Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions.

Adam Frost1, Marc G Elgort, Onn Brandman, Clinton Ives, Sean R Collins, Lakshmi Miller-Vedam, Jimena Weibezahn, Marco Y Hein, Ina Poser, Matthias Mann, Anthony A Hyman, Jonathan S Weissman.   

Abstract

We present a genetic interaction map of pairwise measures including ∼40% of nonessential S. pombe genes. By comparing interaction maps for fission and budding yeast, we confirmed widespread conservation of genetic relationships within and between complexes and pathways. However, we identified an important subset of orthologous complexes that have undergone functional "repurposing": the evolution of divergent functions and partnerships. We validated three functional repurposing events in S. pombe and mammalian cells and discovered that (1) two lumenal sensors of misfolded ER proteins, the kinase/nuclease Ire1 and the glucosyltransferase Gpt1, act together to mount an ER stress response; (2) ESCRT factors regulate spindle-pole-body duplication; and (3) a membrane-protein phosphatase and kinase complex, the STRIPAK complex, bridges the cis-Golgi, the centrosome, and the outer nuclear membrane to direct mitotic progression. Each discovery opens new areas of inquiry and-together-have implications for model organism-based research and the evolution of genetic systems.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22682253      PMCID: PMC3613983          DOI: 10.1016/j.cell.2012.04.028

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  63 in total

1.  Comparative functional genomics of the fission yeasts.

Authors:  Nicholas Rhind; Zehua Chen; Moran Yassour; Dawn A Thompson; Brian J Haas; Naomi Habib; Ilan Wapinski; Sushmita Roy; Michael F Lin; David I Heiman; Sarah K Young; Kanji Furuya; Yabin Guo; Alison Pidoux; Huei Mei Chen; Barbara Robbertse; Jonathan M Goldberg; Keita Aoki; Elizabeth H Bayne; Aaron M Berlin; Christopher A Desjardins; Edward Dobbs; Livio Dukaj; Lin Fan; Michael G FitzGerald; Courtney French; Sharvari Gujja; Klavs Hansen; Dan Keifenheim; Joshua Z Levin; Rebecca A Mosher; Carolin A Müller; Jenna Pfiffner; Margaret Priest; Carsten Russ; Agata Smialowska; Peter Swoboda; Sean M Sykes; Matthew Vaughn; Sonya Vengrova; Ryan Yoder; Qiandong Zeng; Robin Allshire; David Baulcombe; Bruce W Birren; William Brown; Karl Ekwall; Manolis Kellis; Janet Leatherwood; Henry Levin; Hanah Margalit; Rob Martienssen; Conrad A Nieduszynski; Joseph W Spatafora; Nir Friedman; Jacob Z Dalgaard; Peter Baumann; Hironori Niki; Aviv Regev; Chad Nusbaum
Journal:  Science       Date:  2011-04-21       Impact factor: 47.728

Review 2.  The budding yeast spindle pole body: structure, duplication, and function.

Authors:  Sue L Jaspersen; Mark Winey
Journal:  Annu Rev Cell Dev Biol       Date:  2004       Impact factor: 13.827

3.  Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants.

Authors:  Junbiao Dai; Edel M Hyland; Daniel S Yuan; Hailiang Huang; Joel S Bader; Jef D Boeke
Journal:  Cell       Date:  2008-09-19       Impact factor: 41.582

4.  Mapping of signaling networks through synthetic genetic interaction analysis by RNAi.

Authors:  Thomas Horn; Thomas Sandmann; Bernd Fischer; Elin Axelsson; Wolfgang Huber; Michael Boutros
Journal:  Nat Methods       Date:  2011-03-06       Impact factor: 28.547

Review 5.  Phosphatases: providing safe passage through mitotic exit.

Authors:  Claudia Wurzenberger; Daniel W Gerlich
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-13       Impact factor: 94.444

6.  Quantitative genetic interaction mapping using the E-MAP approach.

Authors:  Sean R Collins; Assen Roguev; Nevan J Krogan
Journal:  Methods Enzymol       Date:  2010-03-01       Impact factor: 1.600

7.  Alp7/TACC is a crucial target in Ran-GTPase-dependent spindle formation in fission yeast.

Authors:  Masamitsu Sato; Takashi Toda
Journal:  Nature       Date:  2007-05-02       Impact factor: 49.962

8.  A PP2A phosphatase high density interaction network identifies a novel striatin-interacting phosphatase and kinase complex linked to the cerebral cavernous malformation 3 (CCM3) protein.

Authors:  Marilyn Goudreault; Lisa M D'Ambrosio; Michelle J Kean; Michael J Mullin; Brett G Larsen; Amy Sanchez; Sidharth Chaudhry; Ginny I Chen; Frank Sicheri; Alexey I Nesvizhskii; Ruedi Aebersold; Brian Raught; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2008-09-08       Impact factor: 5.911

9.  Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum.

Authors:  Martin C Jonikas; Sean R Collins; Vladimir Denic; Eugene Oh; Erin M Quan; Volker Schmid; Jimena Weibezahn; Blanche Schwappach; Peter Walter; Jonathan S Weissman; Maya Schuldiner
Journal:  Science       Date:  2009-03-27       Impact factor: 47.728

10.  A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

Authors:  David K Breslow; Dale M Cameron; Sean R Collins; Maya Schuldiner; Jacob Stewart-Ornstein; Heather W Newman; Sigurd Braun; Hiten D Madhani; Nevan J Krogan; Jonathan S Weissman
Journal:  Nat Methods       Date:  2008-07-11       Impact factor: 28.547

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  77 in total

Review 1.  STRIPAK complexes in cell signaling and cancer.

Authors:  Z Shi; S Jiao; Z Zhou
Journal:  Oncogene       Date:  2016-02-15       Impact factor: 9.867

2.  Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Authors:  Aashiq H Kachroo; Jon M Laurent; Christopher M Yellman; Austin G Meyer; Claus O Wilke; Edward M Marcotte
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

3.  SG2NA is a regulator of endoplasmic reticulum (ER) homeostasis as its depletion leads to ER stress.

Authors:  Buddhi Prakash Jain; Shweta Pandey; Nikhat Saleem; Goutam K Tanti; Shalini Mishra; Shyamal K Goswami
Journal:  Cell Stress Chaperones       Date:  2017-06-21       Impact factor: 3.667

4.  Chm7 and Heh1 collaborate to link nuclear pore complex quality control with nuclear envelope sealing.

Authors:  Brant M Webster; David J Thaller; Jens Jäger; Sarah E Ochmann; Sapan Borah; C Patrick Lusk
Journal:  EMBO J       Date:  2016-10-12       Impact factor: 11.598

Review 5.  Big data mining powers fungal research: recent advances in fission yeast systems biology approaches.

Authors:  Zhe Wang
Journal:  Curr Genet       Date:  2016-10-11       Impact factor: 3.886

6.  The RhoD to centrosomal duplication.

Authors:  Athena Kyrkou; Maria Soufi; Ramona Bahtz; Charles Ferguson; Maria Bai; Robert G Parton; Ingrid Hoffmann; Marino Zerial; Theodore Fotsis; Carol Murphy
Journal:  Small GTPases       Date:  2013-02-19

7.  Tiered assembly of the yeast Far3-7-8-9-10-11 complex at the endoplasmic reticulum.

Authors:  Tammy Pracheil; Zhengchang Liu
Journal:  J Biol Chem       Date:  2013-04-26       Impact factor: 5.157

Review 8.  RNAi screening comes of age: improved techniques and complementary approaches.

Authors:  Stephanie E Mohr; Jennifer A Smith; Caroline E Shamu; Ralph A Neumüller; Norbert Perrimon
Journal:  Nat Rev Mol Cell Biol       Date:  2014-09       Impact factor: 94.444

9.  The unfolded protein response in fission yeast modulates stability of select mRNAs to maintain protein homeostasis.

Authors:  Philipp Kimmig; Marcy Diaz; Jiashun Zheng; Christopher C Williams; Alexander Lang; Tomas Aragón; Hao Li; Peter Walter
Journal:  Elife       Date:  2012-10-15       Impact factor: 8.140

Review 10.  Genotype to phenotype via network analysis.

Authors:  Hannah Carter; Matan Hofree; Trey Ideker
Journal:  Curr Opin Genet Dev       Date:  2013-11-14       Impact factor: 5.578

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