Literature DB >> 22670559

Protein transport through a narrow solid-state nanopore at high voltage: experiments and theory.

Benjamin Cressiot1, Abdelghani Oukhaled, Gilles Patriarche, Manuela Pastoriza-Gallego, Jean-Michel Betton, Loïc Auvray, Murugappan Muthukumar, Laurent Bacri, Juan Pelta.   

Abstract

We report experimentally the transport of an unfolded protein through a narrow solid-state nanopore of 3 nm diameter as a function of applied voltage. The random coil polypeptide chain is larger than the nanopore. The event frequency dependency of current blockades from 200 to 750 mV follows a van't Hoff-Arrhenius law due to the confinement of the unfolded chain. The protein is an extended conformation inside the pore at high voltage. We observe that the protein dwell time decreases exponentially at medium voltage and is inversely proportional to voltage for higher values. This is consistent with the translocation mechanism where the protein is confined in the pore, creating an entropic barrier, followed by electrophoretic transport. We compare these results to our previous work with a larger pore of 20 nm diameter. Our data suggest that electro-osmotic flow and protein adsorption on the narrowest nanopore wall are minimized. We discuss the experimental data obtained as compared with recent theory for the polyelectrolyte translocation process. This theory reproduces clearly the experimental crossover between the entropic barrier regime with medium voltage and the electrophoretic regime with higher voltage.

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Year:  2012        PMID: 22670559     DOI: 10.1021/nn301672g

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  28 in total

1.  Fingerprinting of Peptides with a Large Channel of Bacteriophage Phi29 DNA Packaging Motor.

Authors:  Zhouxiang Ji; Shaoying Wang; Zhengyi Zhao; Zhi Zhou; Farzin Haque; Peixuan Guo
Journal:  Small       Date:  2016-07-20       Impact factor: 13.281

2.  From current trace to the understanding of confined media.

Authors:  Jean Roman; Bruno Le Pioufle; Loïc Auvray; Juan Pelta; Laurent Bacri
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-03       Impact factor: 1.890

3.  Communication: Charge, diffusion, and mobility of proteins through nanopores.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2014-08-28       Impact factor: 3.488

4.  Nano-channel of viral DNA packaging motor as single pore to differentiate peptides with single amino acid difference.

Authors:  Zhouxiang Ji; Xinqi Kang; Shaoying Wang; Peixuan Guo
Journal:  Biomaterials       Date:  2018-08-03       Impact factor: 12.479

5.  Reading the primary structure of a protein with 0.07 nm3 resolution using a subnanometre-diameter pore.

Authors:  Eamonn Kennedy; Zhuxin Dong; Clare Tennant; Gregory Timp
Journal:  Nat Nanotechnol       Date:  2016-07-25       Impact factor: 39.213

6.  Dynamics of a polyelectrolyte through aerolysin channel as a function of applied voltage and concentration.

Authors:  Manuela Pastoriza-Gallego; Bénédicte Thiébot; Laurent Bacri; Loïc Auvray; Juan Pelta
Journal:  Eur Phys J E Soft Matter       Date:  2018-05-11       Impact factor: 1.890

7.  How Nanopore Translocation Experiments Can Measure RNA Unfolding.

Authors:  Prasad Bandarkar; Huan Yang; Robert Y Henley; Meni Wanunu; Paul C Whitford
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

8.  Theory of polymer-nanopore interactions refined using molecular dynamics simulations.

Authors:  Arvind Balijepalli; Joseph W F Robertson; Joseph E Reiner; John J Kasianowicz; Richard W Pastor
Journal:  J Am Chem Soc       Date:  2013-04-30       Impact factor: 15.419

9.  Dynamics and Energy Contributions for Transport of Unfolded Pertactin through a Protein Nanopore.

Authors:  Benjamin Cressiot; Esther Braselmann; Abdelghani Oukhaled; Adrian H Elcock; Juan Pelta; Patricia L Clark
Journal:  ACS Nano       Date:  2015-08-28       Impact factor: 15.881

Review 10.  Recent trends in nanopores for biotechnology.

Authors:  Daniel H Stoloff; Meni Wanunu
Journal:  Curr Opin Biotechnol       Date:  2012-12-19       Impact factor: 9.740

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