Literature DB >> 22669652

Rendering RNA in 3D.

Reza Behrouzi1, Sarah A Woodson.   

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Year:  2012        PMID： 22669652     DOI： 10.1038/nmeth.2045

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  12 in total

1.  RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Authors:  José Almeida Cruz; Marc-Frédérick Blanchet; Michal Boniecki; Janusz M Bujnicki; Shi-Jie Chen; Song Cao; Rhiju Das; Feng Ding; Nikolay V Dokholyan; Samuel Coulbourn Flores; Lili Huang; Christopher A Lavender; Véronique Lisi; François Major; Katarzyna Mikolajczak; Dinshaw J Patel; Anna Philips; Tomasz Puton; John Santalucia; Fredrick Sijenyi; Thomas Hermann; Kristian Rother; Magdalena Rother; Alexander Serganov; Marcin Skorupski; Tomasz Soltysinski; Parin Sripakdeevong; Irina Tuszynska; Kevin M Weeks; Christina Waldsich; Michael Wildauer; Neocles B Leontis; Eric Westhof
Journal:  RNA       Date:  2012-02-23       Impact factor: 4.942

2.  Protein-independent folding pathway of the 16S rRNA 5' domain.

Authors:  Tadepalli Adilakshmi; Priya Ramaswamy; Sarah A Woodson
Journal:  J Mol Biol       Date:  2005-08-19       Impact factor: 5.469

3.  The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data.

Authors:  Marc Parisien; François Major
Journal:  Nature       Date:  2008-03-06       Impact factor: 49.962

Review 4.  Mapping nucleic acid structure by hydroxyl radical cleavage.

Authors:  Thomas D Tullius; Jason A Greenbaum
Journal:  Curr Opin Chem Biol       Date:  2005-04       Impact factor: 8.822

5.  The paradoxical behavior of a highly structured misfolded intermediate in RNA folding.

Authors:  Rick Russell; Rhiju Das; Hyejean Suh; Kevin J Travers; Alain Laederach; Mark A Engelhardt; Daniel Herschlag
Journal:  J Mol Biol       Date:  2006-08-15       Impact factor: 5.469

6.  RNA folding at millisecond intervals by synchrotron hydroxyl radical footprinting.

Authors:  B Sclavi; M Sullivan; M R Chance; M Brenowitz; S A Woodson
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

7.  Atomic accuracy in predicting and designing noncanonical RNA structure.

Authors:  Rhiju Das; John Karanicolas; David Baker
Journal:  Nat Methods       Date:  2010-02-28       Impact factor: 28.547

8.  Three-dimensional RNA structure refinement by hydroxyl radical probing.

Authors:  Feng Ding; Christopher A Lavender; Kevin M Weeks; Nikolay V Dokholyan
Journal:  Nat Methods       Date:  2012-04-15       Impact factor: 28.547

9.  Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation.

Authors:  Tadepalli Adilakshmi; Richard A Lease; Sarah A Woodson
Journal:  Nucleic Acids Res       Date:  2006-05-08       Impact factor: 16.971

10.  Knowledge-based instantiation of full atomic detail into coarse-grain RNA 3D structural models.

Authors:  Magdalena A Jonikas; Randall J Radmer; Russ B Altman
Journal:  Bioinformatics       Date:  2009-10-07       Impact factor: 6.937
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