Literature DB >> 22669075

Repetitive sequences originating from the centromere constitute large-scale heterochromatin in the telomere region in the siamang, a small ape.

A Koga1, Y Hirai, T Hara, H Hirai.   

Abstract

Chromosomes of the siamang Symphalangus syndactylus (a small ape) carry large-scale heterochromatic structures at their ends. These structures look similar, by chromosome C-banding, to chromosome-end heterochromatin found in chimpanzee, bonobo and gorilla (African great apes), of which a major component is tandem repeats of 32-bp-long, AT-rich units. In the present study, we identified repetitive sequences that are a major component of the siamang heterochromatin. Their repeat units are 171 bp in length, and exhibit sequence similarity to alpha satellite DNA, a major component of the centromeres in primates. Thus, the large-scale heterochromatic structures have different origins between the great apes and the small ape. The presence of alpha satellite DNA in the telomere region has previously been reported in the white-cheeked gibbon Nomascus leucogenys, another small ape species. There is, however, a difference in the size of the telomere-region alpha satellite DNA, which is far larger in the siamang. It is not known whether the sequences of these two species (of different genera) have a common origin because the phylogenetic relationship of genera within the small ape family is still not clear. Possible evolutionary scenarios are discussed.

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Year:  2012        PMID: 22669075      PMCID: PMC3424917          DOI: 10.1038/hdy.2012.28

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  29 in total

1.  Structure and polymorphism of human telomere-associated DNA.

Authors:  W R Brown; P J MacKinnon; A Villasanté; N Spurr; V J Buckle; M J Dobson
Journal:  Cell       Date:  1990-10-05       Impact factor: 41.582

2.  Genomic differentiation of 18S ribosomal DNA and beta-satellite DNA in the hominoid and its evolutionary aspects.

Authors:  H Hirai; T Taguchi; A K Godwin
Journal:  Chromosome Res       Date:  1999       Impact factor: 5.239

Review 3.  Evolution of alpha satellite.

Authors:  H F Willard
Journal:  Curr Opin Genet Dev       Date:  1991-12       Impact factor: 5.578

4.  Conservation of the human telomere sequence (TTAGGG)n among vertebrates.

Authors:  J Meyne; R L Ratliff; R K Moyzis
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

5.  Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.

Authors:  O K Pickeral; W Makałowski; M S Boguski; J D Boeke
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

6.  The structure of a subterminal repeated sequence present on many human chromosomes.

Authors:  S Cross; J Lindsey; J Fantes; S McKay; N McGill; H Cooke
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

7.  Characterization and organization of DNA sequences adjacent to the human telomere associated repeat (TTAGGG)n.

Authors:  B Weber; C Collins; C Robbins; R E Magenis; A D Delaney; J W Gray; M R Hayden
Journal:  Nucleic Acids Res       Date:  1990-06-11       Impact factor: 16.971

8.  The origin of man: a chromosomal pictorial legacy.

Authors:  J J Yunis; O Prakash
Journal:  Science       Date:  1982-03-19       Impact factor: 47.728

9.  Chromosomal phylogeny and evolution of gibbons (Hylobatidae).

Authors:  Stefan Müller; Melanie Hollatz; Johannes Wienberg
Journal:  Hum Genet       Date:  2003-09-03       Impact factor: 4.132

10.  Cytogenetic differentiation of two sympatric tree shrew taxa found in the southern part of the Isthmus of Kra.

Authors:  Hirohisa Hirai; Yuriko Hirai; Yoshi Kawamoto; Hideki Endo; Junpei Kimura; Worawut Rerkamnuaychoke
Journal:  Chromosome Res       Date:  2002       Impact factor: 4.620

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  9 in total

1.  Higher-order repeat structure in alpha satellite DNA occurs in New World monkeys and is not confined to hominoids.

Authors:  Penporn Sujiwattanarat; Watcharaporn Thapana; Kornsorn Srikulnath; Yuriko Hirai; Hirohisa Hirai; Akihiko Koga
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

2.  Locational diversity of alpha satellite DNA and intergeneric hybridization aspects in the Nomascus and Hylobates genera of small apes.

Authors:  Sudarath Baicharoen; Takako Miyabe-Nishiwaki; Visit Arsaithamkul; Yuriko Hirai; Kwanruen Duangsa-ard; Boripat Siriaroonrat; Hiroshi Domae; Kornsorn Srikulnath; Akihiko Koga; Hirohisa Hirai
Journal:  PLoS One       Date:  2014-10-07       Impact factor: 3.240

3.  Co-Opted Megasatellite DNA Drives Evolution of Secondary Night Vision in Azara's Owl Monkey.

Authors:  Akihiko Koga; Hideyuki Tanabe; Yuriko Hirai; Hiroo Imai; Masanori Imamura; Takao Oishi; Roscoe Stanyon; Hirohisa Hirai
Journal:  Genome Biol Evol       Date:  2017-07-01       Impact factor: 3.416

Review 4.  Dark Matter of Primate Genomes: Satellite DNA Repeats and Their Evolutionary Dynamics.

Authors:  Syed Farhan Ahmad; Worapong Singchat; Maryam Jehangir; Aorarat Suntronpong; Thitipong Panthum; Suchinda Malaivijitnond; Kornsorn Srikulnath
Journal:  Cells       Date:  2020-12-18       Impact factor: 6.600

Review 5.  Variation and Evolution of Human Centromeres: A Field Guide and Perspective.

Authors:  Karen H Miga; Ivan A Alexandrov
Journal:  Annu Rev Genet       Date:  2021-11-23       Impact factor: 13.826

6.  Two types of alpha satellite DNA in distinct chromosomal locations in Azara's owl monkey.

Authors:  Ornjira Prakhongcheep; Yuriko Hirai; Toru Hara; Kornsorn Srikulnath; Hirohisa Hirai; Akihiko Koga
Journal:  DNA Res       Date:  2013-03-10       Impact factor: 4.458

7.  Heterochromatin blocks constituting the entire short arms of acrocentric chromosomes of Azara's owl monkey: formation processes inferred from chromosomal locations.

Authors:  Ornjira Prakhongcheep; Nampech Chaiprasertsri; Shoko Terada; Yuriko Hirai; Kornsorn Srikulnath; Hirohisa Hirai; Akihiko Koga
Journal:  DNA Res       Date:  2013-06-11       Impact factor: 4.458

8.  Evolutionary origin of higher-order repeat structure in alpha-satellite DNA of primate centromeres.

Authors:  Akihiko Koga; Yuriko Hirai; Shoko Terada; Israt Jahan; Sudarath Baicharoen; Visit Arsaithamkul; Hirohisa Hirai
Journal:  DNA Res       Date:  2014-02-27       Impact factor: 4.458

9.  Identification of homogeneously staining regions by G-banding and chromosome microdissection, and FISH marker selection using human Alu sequence primers in a scleractinian coral Coelastrea aspera Verrill, 1866 (Cnidaria).

Authors:  Takahiro Taguchi; Satoshi Kubota; Takuma Mezaki; Erika Tagami; Satoko Sekida; Shu Nakachi; Kazuo Okuda; Akira Tominaga
Journal:  Comp Cytogenet       Date:  2016-01-22       Impact factor: 1.800

  9 in total

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