Literature DB >> 22667546

Estimating statistical distributions using an integral identity.

Cheng Zhang1, Jianpeng Ma.   

Abstract

We present an identity for an unbiased estimate of a general statistical distribution. The identity computes the distribution density from dividing a histogram sum over a local window by a correction factor from a mean-force integral, and the mean force can be evaluated as a configuration average. We show that the optimal window size is roughly the inverse of the local mean-force fluctuation. The new identity offers a more robust and precise estimate than a previous one by Adib and Jarzynski [J. Chem. Phys. 122, 014114 (2005)]. It also allows a straightforward generalization to an arbitrary ensemble and a joint distribution of multiple variables. Particularly we derive a mean-force enhanced version of the weighted histogram analysis method. The method can be used to improve distributions computed from molecular simulations. We illustrate the use in computing a potential energy distribution, a volume distribution in a constant-pressure ensemble, a radial distribution function, and a joint distribution of amino acid backbone dihedral angles.

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Year:  2012        PMID: 22667546      PMCID: PMC3376154          DOI: 10.1063/1.4721638

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  15 in total

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6.  A configurational temperature Nosé-Hoover thermostat.

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Journal:  J Chem Phys       Date:  2005-10-01       Impact factor: 3.488

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8.  Entropy and density of states from isoenergetic nonequilibrium processes.

Authors:  Artur B Adib
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-31

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Journal:  J Chem Phys       Date:  2007-01-07       Impact factor: 3.488

10.  Binless estimation of the potential of mean force.

Authors:  Jodi E Basner; Christopher Jarzynski
Journal:  J Phys Chem B       Date:  2008-09-13       Impact factor: 2.991

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  1 in total

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Journal:  J Biomol Struct Dyn       Date:  2013-02-05
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