Literature DB >> 22665478

Functional mapping of interacting regions of the photoreceptor phosphodiesterase (PDE6) γ-subunit with PDE6 catalytic dimer, transducin, and regulator of G-protein signaling9-1 (RGS9-1).

Xiu-Jun Zhang1, Xiong-Zhuo Gao, Wei Yao, Rick H Cote.   

Abstract

The cGMP phosphodiesterase (PDE6) involved in visual transduction in photoreceptor cells contains two inhibitory γ-subunits (Pγ) which bind to the catalytic core (Pαβ) to inhibit catalysis and stimulate cGMP binding to the GAF domains of Pαβ. During visual excitation, interaction of activated transducin with Pγ relieves inhibition. Pγ also participates in a complex with RGS9-1 and other proteins to accelerate the GTPase activity of activated transducin. We studied the structural determinants for these important functions of Pγ. First, we identified two important sites in the middle region of Pγ (amino acids 27-38 and 52-54) that significantly stabilize the overall binding affinity of Pγ with Pαβ. The ability of Pγ to stimulate noncatalytic cGMP binding to the GAF domains of PDE6 has been localized to amino acids 27-30 of Pγ. Transducin activation of PDE6 catalysis critically depends on the presence of Ile54 in the glycine-rich region of Pγ in order to relieve inhibition of catalysis. The central glycine-rich region of Pγ is also required for transducin to increase cGMP exchange at the GAF domains. Finally, Thr-65 and/or Val-66 of Pγ are critical residues for Pγ to stimulate GTPase activity of transducin in a complex with RGS9-1. We propose that the glycine-rich region of Pγ is a primary docking site for PDE6-interacting proteins involved in the activation/inactivation pathways of visual transduction. This functional mapping of Pγ with its binding partners demonstrates the remarkable versatility of this multifunctional protein and its central role in regulating the activation and lifetime of visual transduction.

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Year:  2012        PMID: 22665478      PMCID: PMC3406715          DOI: 10.1074/jbc.M112.377333

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  Enzymology of GTPase acceleration in phototransduction.

Authors:  C W Cowan; T G Wensel; V Y Arshavsky
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Characterization of conformational changes and protein-protein interactions of rod photoreceptor phosphodiesterase (PDE6).

Authors:  Suzanne L Matte; Thomas M Laue; Rick H Cote
Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

3.  N-terminal half of the cGMP phosphodiesterase gamma-subunit contributes to stabilization of the GTPase-accelerating protein complex.

Authors:  Lian-Wang Guo; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2011-03-10       Impact factor: 5.157

4.  The GAF domain: an evolutionary link between diverse phototransducing proteins.

Authors:  L Aravind; C P Ponting
Journal:  Trends Biochem Sci       Date:  1997-12       Impact factor: 13.807

5.  Reciprocal control of retinal rod cyclic GMP phosphodiesterase by its gamma subunit and transducin.

Authors:  T G Wensel; L Stryer
Journal:  Proteins       Date:  1986-09

6.  Asymmetric interaction between rod cyclic GMP phosphodiesterase gamma subunits and alphabeta subunits.

Authors:  Lian-Wang Guo; Jennifer E Grant; Abdol R Hajipour; Hakim Muradov; Marty Arbabian; Nikolai O Artemyev; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2005-01-24       Impact factor: 5.157

7.  Cyclic guanosine 5'-monophosphate binding to regulatory GAF domains of photoreceptor phosphodiesterase.

Authors:  Rick H Cote
Journal:  Methods Mol Biol       Date:  2005

8.  Purification of PDE6 isozymes from mammalian retina.

Authors:  Dana C Pentia; Suzanne Hosier; Rachel A Collupy; Beverly A Valeriani; Rick H Cote
Journal:  Methods Mol Biol       Date:  2005

Review 9.  Naturally occurring animal models with outer retina phenotypes.

Authors:  Wolfgang Baehr; Jeanne M Frederick
Journal:  Vision Res       Date:  2009-04-16       Impact factor: 1.886

10.  Role for the target enzyme in deactivation of photoreceptor G protein in vivo.

Authors:  S H Tsang; M E Burns; P D Calvert; P Gouras; D A Baylor; S P Goff; V Y Arshavsky
Journal:  Science       Date:  1998-10-02       Impact factor: 47.728

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  11 in total

1.  The N termini of the inhibitory γ-subunits of phosphodiesterase-6 (PDE6) from rod and cone photoreceptors differentially regulate transducin-mediated PDE6 activation.

Authors:  Xin Wang; David C Plachetzki; Rick H Cote
Journal:  J Biol Chem       Date:  2019-04-08       Impact factor: 5.157

2.  Molecular architecture of photoreceptor phosphodiesterase elucidated by chemical cross-linking and integrative modeling.

Authors:  Xiaohui Zeng-Elmore; Xiong-Zhuo Gao; Riccardo Pellarin; Dina Schneidman-Duhovny; Xiu-Jun Zhang; Katie A Kozacka; Yang Tang; Andrej Sali; Robert J Chalkley; Rick H Cote; Feixia Chu
Journal:  J Mol Biol       Date:  2014-08-19       Impact factor: 5.469

3.  The molecular architecture of photoreceptor phosphodiesterase 6 (PDE6) with activated G protein elucidates the mechanism of visual excitation.

Authors:  Michael J Irwin; Richa Gupta; Xiong-Zhuo Gao; Karyn B Cahill; Feixia Chu; Rick H Cote
Journal:  J Biol Chem       Date:  2019-11-05       Impact factor: 5.157

4.  Allosteric Regulation of Rod Photoreceptor Phosphodiesterase 6 (PDE6) Elucidated by Chemical Cross-Linking and Quantitative Mass Spectrometry.

Authors:  Feixia Chu; Donna Hogan; Richa Gupta; Xiong-Zhuo Gao; Hieu T Nguyen; Rick H Cote
Journal:  J Mol Biol       Date:  2019-08-05       Impact factor: 5.469

5.  Cone phosphodiesterase-6α' restores rod function and confers distinct physiological properties in the rod phosphodiesterase-6β-deficient rd10 mouse.

Authors:  Wen-Tao Deng; Keisuke Sakurai; Saravanan Kolandaivelu; Alexander V Kolesnikov; Astra Dinculescu; Jie Li; Ping Zhu; Xuan Liu; Jijing Pang; Vince A Chiodo; Sanford L Boye; Bo Chang; Visvanathan Ramamurthy; Vladimir J Kefalov; William W Hauswirth
Journal:  J Neurosci       Date:  2013-07-17       Impact factor: 6.167

Review 6.  Photoreceptor phosphodiesterase (PDE6): activation and inactivation mechanisms during visual transduction in rods and cones.

Authors:  Rick H Cote
Journal:  Pflugers Arch       Date:  2021-04-15       Impact factor: 4.458

7.  Cryo-EM structure of phosphodiesterase 6 reveals insights into the allosteric regulation of type I phosphodiesterases.

Authors:  Sahil Gulati; Krzysztof Palczewski; Andreas Engel; Henning Stahlberg; Lubomir Kovacik
Journal:  Sci Adv       Date:  2019-02-27       Impact factor: 14.136

8.  Evolution and expression of the phosphodiesterase 6 genes unveils vertebrate novelty to control photosensitivity.

Authors:  David Lagman; Ilkin E Franzén; Joel Eggert; Dan Larhammar; Xesús M Abalo
Journal:  BMC Evol Biol       Date:  2016-06-13       Impact factor: 3.260

9.  Cone Phosphodiesterase-6γ' Subunit Augments Cone PDE6 Holoenzyme Assembly and Stability in a Mouse Model Lacking Both Rod and Cone PDE6 Catalytic Subunits.

Authors:  Wen-Tao Deng; Saravanan Kolandaivelu; Astra Dinculescu; Jie Li; Ping Zhu; Vince A Chiodo; Visvanathan Ramamurthy; William W Hauswirth
Journal:  Front Mol Neurosci       Date:  2018-07-09       Impact factor: 5.639

Review 10.  Photoreceptor Phosphodiesterase (PDE6): Structure, Regulatory Mechanisms, and Implications for Treatment of Retinal Diseases.

Authors:  Rick H Cote; Richa Gupta; Michael J Irwin; Xin Wang
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

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