Literature DB >> 22665249

Killer cell immunoglobulin-like receptors (KIR) typing by DNA sequencing.

Lihua Hou1, Minghua Chen, Noriko Steiner, Kanthi Kariyawasam, Jennifer Ng, Carolyn K Hurley.   

Abstract

DNA sequencing is a powerful technique for identifying allelic variation within the natural killer cell immunoglobulin-like receptor genes. Because of the relatively large size of the KIR genes, each locus is amplified in two or more overlapping segments. Sanger sequencing of each gene from a preparation containing one or two alleles yields a sequence that is used to identify the alleles by comparison with a reference database.

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Year:  2012        PMID： 22665249      PMCID： PMC3478768          DOI： 10.1007/978-1-61779-842-9_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  24 in total

Review 1.  The killer immunoglobulin-like receptor gene cluster: tuning the genome for defense.

Authors:  Arman A Bashirova; Maureen P Martin; Daniel W McVicar; Mary Carrington
Journal:  Annu Rev Genomics Hum Genet       Date:  2006       Impact factor: 8.929

2.  Detailed gene and allele content analysis of three homozygous KIR haplotypes.

Authors:  S Murdoch; M Seoud; R Kircheisen; B Mazhar; R Slim
Journal:  Tissue Antigens       Date:  2006-07

Review 3.  KIR and disease: a model system or system of models?

Authors:  Salim I Khakoo; Mary Carrington
Journal:  Immunol Rev       Date:  2006-12       Impact factor: 12.988

4.  Donor selection for natural killer cell receptor genes leads to superior survival after unrelated transplantation for acute myelogenous leukemia.

Authors:  Sarah Cooley; Daniel J Weisdorf; Lisbeth A Guethlein; John P Klein; Tao Wang; Chap T Le; Steven G E Marsh; Daniel Geraghty; Stephen Spellman; Michael D Haagenson; Martha Ladner; Elizabeth Trachtenberg; Peter Parham; Jeffrey S Miller
Journal:  Blood       Date:  2010-06-25       Impact factor: 22.113

5.  Human diversity in killer cell inhibitory receptor genes.

Authors:  M Uhrberg; N M Valiante; B P Shum; H G Shilling; K Lienert-Weidenbach; B Corliss; D Tyan; L L Lanier; P Parham
Journal:  Immunity       Date:  1997-12       Impact factor: 31.745

6.  The silent KIR3DP1 gene (CD158c) is transcribed and might encode a secreted receptor in a minority of humans, in whom the KIR3DP1, KIR2DL4 and KIR3DL1/KIR3DS1 genes are duplicated.

Authors:  Natalia Gómez-Lozano; Ernesto Estefanía; Fionnuala Williams; Iris Halfpenny; Derek Middleton; Rosario Solís; Carlos Vilches
Journal:  Eur J Immunol       Date:  2005-01       Impact factor: 5.532

7.  Genes encoding human killer-cell Ig-like receptors with D1 and D2 extracellular domains all contain untranslated pseudoexons encoding a third Ig-like domain.

Authors:  C Vilches; M J Pando; P Parham
Journal:  Immunogenetics       Date:  2000-07       Impact factor: 2.846

8.  Genotyping of human killer-cell immunoglobulin-like receptor genes by polymerase chain reaction with sequence-specific primers: an update.

Authors:  N Gómez-Lozano; Carlos Vilches
Journal:  Tissue Antigens       Date:  2002-03

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Cutting edge: expansion of the KIR locus by unequal crossing over.

Authors:  Maureen P Martin; Arman Bashirova; James Traherne; John Trowsdale; Mary Carrington
Journal:  J Immunol       Date:  2003-09-01       Impact factor: 5.422
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  7 in total

1.  The molecular basis of how buried human leukocyte antigen polymorphism modulates natural killer cell function.

Authors:  Philippa M Saunders; Bruce J MacLachlan; Phillip Pymm; Patricia T Illing; Yuanchen Deng; Shu Cheng Wong; Clare V L Oates; Anthony W Purcell; Jamie Rossjohn; Julian P Vivian; Andrew G Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-13       Impact factor: 11.205

2.  KIR3DS1-Specific D0 Domain Polymorphisms Disrupt KIR3DL1 Surface Expression and HLA Binding.

Authors:  Tiernan J Mulrooney; Aaron C Zhang; Yehuda Goldgur; Jeanette E Boudreau; Katharine C Hsu
Journal:  J Immunol       Date:  2015-06-24       Impact factor: 5.422

3.  A method for killer-cell immunoglobulin-like receptor (KIR) 3DL1/3DS1 genotyping using DNA recovered from frozen plasma.

Authors:  Aniqa Shahid; Denis R Chopera; Eric Martin; Kali A Penney; M-J Milloy; Zabrina L Brumme
Journal:  J Immunol Methods       Date:  2013-03-21       Impact factor: 2.303

4.  Allelic variation in KIR2DL3 generates a KIR2DL2-like receptor with increased binding to its HLA-C ligand.

Authors:  William R Frazier; Noriko Steiner; Lihua Hou; Sivanesan Dakshanamurthy; Carolyn Katovich Hurley
Journal:  J Immunol       Date:  2013-05-17       Impact factor: 5.422

5.  Killer Immunoglobulin-Like Receptor Allele Determination Using Next-Generation Sequencing Technology.

Authors:  Bercelin Maniangou; Nolwenn Legrand; Mehdi Alizadeh; Ulysse Guyet; Catherine Willem; Gaëlle David; Eric Charpentier; Alexandre Walencik; Christelle Retière; Katia Gagne
Journal:  Front Immunol       Date:  2017-05-19       Impact factor: 7.561

6.  Allele-Level KIR Genotyping of More Than a Million Samples: Workflow, Algorithm, and Observations.

Authors:  Ines Wagner; Daniel Schefzyk; Jens Pruschke; Gerhard Schöfl; Bianca Schöne; Nicole Gruber; Kathrin Lang; Jan Hofmann; Christine Gnahm; Bianca Heyn; Wesley M Marin; Ravi Dandekar; Jill A Hollenbach; Johannes Schetelig; Julia Pingel; Paul J Norman; Jürgen Sauter; Alexander H Schmidt; Vinzenz Lange
Journal:  Front Immunol       Date:  2018-12-04       Impact factor: 7.561

7.  Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.

Authors:  Rachel M Pyke; Raphael Genolet; Alexandre Harari; George Coukos; David Gfeller; Hannah Carter
Journal:  Pac Symp Biocomput       Date:  2019
  7 in total

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