Literature DB >> 22662913

Excess mutual catalysis is required for effective evolvability.

Omer Markovitch1, Doron Lancet.   

Abstract

It is widely accepted that autocatalysis constitutes a crucial facet of effective replication and evolution (e.g., in Eigen's hypercycle model). Other models for early evolution (e.g., by Dyson, Gánti, Varela, and Kauffman) invoke catalytic networks, where cross-catalysis is more apparent. A key question is how the balance between auto- (self-) and cross- (mutual) catalysis shapes the behavior of model evolving systems. This is investigated using the graded autocatalysis replication domain (GARD) model, previously shown to capture essential features of reproduction, mutation, and evolution in compositional molecular assemblies. We have performed numerical simulations of an ensemble of GARD networks, each with a different set of lognormally distributed catalytic values. We asked what is the influence of the catalytic content of such networks on beneficial evolution. Importantly, a clear trend was observed, wherein only networks with high mutual catalysis propensity (p(mc)) allowed for an augmented diversity of composomes, quasi-stationary compositions that exhibit high replication fidelity. We have reexamined a recent analysis that showed meager selection in a single GARD instance and for a few nonstationary target compositions. In contrast, when we focused here on compotypes (clusters of composomes) as targets for selection in populations of compositional assemblies, appreciable selection response was observed for a large portion of the networks simulated. Further, stronger selection response was seen for high p(mc) values. Our simulations thus demonstrate that GARD can help analyze important facets of evolving systems, and indicate that excess mutual catalysis over self-catalysis is likely to be important for the emergence of molecular systems capable of evolutionlike behavior.

Entities:  

Mesh:

Year:  2012        PMID: 22662913     DOI: 10.1162/artl_a_00064

Source DB:  PubMed          Journal:  Artif Life        ISSN: 1064-5462            Impact factor:   0.667


  19 in total

1.  Novel applications of physical autocatalysis.

Authors:  Andrew J Bissette; Stephen P Fletcher
Journal:  Orig Life Evol Biosph       Date:  2015-02-27       Impact factor: 1.950

2.  Is there an optimal level of open-endedness in prebiotic evolution?

Authors:  Omer Markovitch; Daniel Sorek; Leong Ting Lui; Doron Lancet; Natalio Krasnogor
Journal:  Orig Life Evol Biosph       Date:  2012-10       Impact factor: 1.950

Review 3.  The algorithmic origins of life.

Authors:  Sara Imari Walker; Paul C W Davies
Journal:  J R Soc Interface       Date:  2012-12-12       Impact factor: 4.118

4.  Foldamer hypothesis for the growth and sequence differentiation of prebiotic polymers.

Authors:  Elizaveta Guseva; Ronald N Zuckermann; Ken A Dill
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-22       Impact factor: 11.205

5.  The hierarchical organization of autocatalytic reaction networks and its relevance to the origin of life.

Authors:  Zhen Peng; Jeff Linderoth; David A Baum
Journal:  PLoS Comput Biol       Date:  2022-09-09       Impact factor: 4.779

Review 6.  Systems protobiology: origin of life in lipid catalytic networks.

Authors:  Doron Lancet; Raphael Zidovetzki; Omer Markovitch
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

7.  The Routes of Emergence of Life from LUCA during the RNA and Viral World: A Conspectus.

Authors:  Sohan Jheeta
Journal:  Life (Basel)       Date:  2015-06-05

8.  Transferable Measurements of Heredity in Models of the Origins of Life.

Authors:  Nicholas Guttenberg; Matthieu Laneuville; Melissa Ilardo; Nathanael Aubert-Kato
Journal:  PLoS One       Date:  2015-10-19       Impact factor: 3.240

9.  Quasispecies in population of compositional assemblies.

Authors:  Renan Gross; Itzhak Fouxon; Doron Lancet; Omer Markovitch
Journal:  BMC Evol Biol       Date:  2014-12-30       Impact factor: 3.260

10.  An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.

Authors:  David A Baum; Kalin Vetsigian
Journal:  Orig Life Evol Biosph       Date:  2016-11-18       Impact factor: 1.950

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.