Literature DB >> 22658748

Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis.

James W Fairman1, Nathalie Dautin, Damian Wojtowicz, Wei Liu, Nicholas Noinaj, Travis J Barnard, Eshwar Udho, Teresa M Przytycka, Vadim Cherezov, Susan K Buchanan.   

Abstract

Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They contain C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal β domains that are embedded in the outer membrane. Here, we identify the domain boundaries of an E. coli intimin β domain and use this information to solve its structure and the β domain structure of a Y. pseudotuberculosis invasin. Both β domain structures crystallized as monomers and reveal that the previous range of residues assigned to the β domain also includes a protease-resistant domain that is part of the passenger. Additionally, we identify 146 nonredundant representative members of the intimin/invasin family based on the boundaries of the highly conserved intimin and invasin β domains. We then use this set of sequences along with our structural data to find and map the evolutionarily constrained residues within the β domain.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22658748      PMCID: PMC3392549          DOI: 10.1016/j.str.2012.04.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  46 in total

1.  Self-association of EPEC intimin mediated by the beta-barrel-containing anchor domain: a role in clustering of the Tir receptor.

Authors:  Thierry Touzé; Richard D Hayward; Jeyanthy Eswaran; John M Leong; Vassilis Koronakis
Journal:  Mol Microbiol       Date:  2004-01       Impact factor: 3.501

2.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Authors:  Weizhong Li; Adam Godzik
Journal:  Bioinformatics       Date:  2006-05-26       Impact factor: 6.937

3.  Incorporation of a polypeptide segment into the beta-domain pore during the assembly of a bacterial autotransporter.

Authors:  Raffaele Ieva; Kristen M Skillman; Harris D Bernstein
Journal:  Mol Microbiol       Date:  2007-11-27       Impact factor: 3.501

4.  Pertactin beta-helix folding mechanism suggests common themes for the secretion and folding of autotransporter proteins.

Authors:  Mirco Junker; Christopher C Schuster; Andrew V McDonnell; Kelli A Sorg; Mary C Finn; Bonnie Berger; Patricia L Clark
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-20       Impact factor: 11.205

5.  HOLE: a program for the analysis of the pore dimensions of ion channel structural models.

Authors:  O S Smart; J G Neduvelil; X Wang; B A Wallace; M S Sansom
Journal:  J Mol Graph       Date:  1996-12

6.  Multiple beta 1 chain integrins are receptors for invasin, a protein that promotes bacterial penetration into mammalian cells.

Authors:  R R Isberg; J M Leong
Journal:  Cell       Date:  1990-03-09       Impact factor: 41.582

7.  Crystallizing membrane proteins for structure-function studies using lipidic mesophases.

Authors:  Martin Caffrey
Journal:  Biochem Soc Trans       Date:  2011-06       Impact factor: 5.407

8.  Autotransporter structure reveals intra-barrel cleavage followed by conformational changes.

Authors:  Travis J Barnard; Nathalie Dautin; Petra Lukacik; Harris D Bernstein; Susan K Buchanan
Journal:  Nat Struct Mol Biol       Date:  2007-11-11       Impact factor: 15.369

9.  Identification of invasin: a protein that allows enteric bacteria to penetrate cultured mammalian cells.

Authors:  R R Isberg; D L Voorhis; S Falkow
Journal:  Cell       Date:  1987-08-28       Impact factor: 41.582

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  41 in total

1.  Expression, purification, crystallization and crystallographic analysis of the N-terminal domain of translocated intimin receptor.

Authors:  Bing Yang Huang; Jiang Gu; Yan Fang Zhang; Jun Jun Zhou; Xiao Yong Song; Yi Lin; Xin Min Li; Lu Li
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-01       Impact factor: 1.056

2.  Lateral opening and exit pore formation are required for BamA function.

Authors:  Nicholas Noinaj; Adam J Kuszak; Curtis Balusek; James C Gumbart; Susan K Buchanan
Journal:  Structure       Date:  2014-06-26       Impact factor: 5.006

3.  The inverse autotransporter intimin exports its passenger domain via a hairpin intermediate.

Authors:  Philipp Oberhettinger; Jack C Leo; Dirk Linke; Ingo B Autenrieth; Monika S Schütz
Journal:  J Biol Chem       Date:  2014-12-08       Impact factor: 5.157

4.  Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization.

Authors:  Jennifer L Johnson; Kevin C Entzminger; Jeongmin Hyun; Sibel Kalyoncu; David P Heaner; Ivan A Morales; Aly Sheppard; James C Gumbart; Jennifer A Maynard; Raquel L Lieberman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27

Review 5.  Emerging methods in protein co-evolution.

Authors:  David de Juan; Florencio Pazos; Alfonso Valencia
Journal:  Nat Rev Genet       Date:  2013-03-05       Impact factor: 53.242

6.  The zinc regulated antivirulence pathway of Salmonella is a multiprotein immunoglobulin adhesion system.

Authors:  Gerd Prehna; Yuling Li; Nikolay Stoynov; Mark Okon; Marija Vuckovic; Lawrence P McIntosh; Leonard J Foster; B Brett Finlay; Natalie C J Strynadka
Journal:  J Biol Chem       Date:  2012-07-18       Impact factor: 5.157

7.  Engineering a Novel Porin OmpGF Via Strand Replacement from Computational Analysis of Sequence Motif.

Authors:  Meishan Lin; Ge Zhang; Monifa Fahie; Leslie K Morgan; Min Chen; Timothy A Keiderling; Linda J Kenney; Jie Liang
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-03-21       Impact factor: 3.747

8.  Secretion of the Intimin Passenger Domain Is Driven by Protein Folding.

Authors:  Jack C Leo; Philipp Oberhettinger; Shogo Yoshimoto; D B R K Gupta Udatha; J Preben Morth; Monika Schütz; Katsutoshi Hori; Dirk Linke
Journal:  J Biol Chem       Date:  2016-07-27       Impact factor: 5.157

9.  Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments.

Authors:  Sibel Kalyoncu; Jeongmin Hyun; Jennifer C Pai; Jennifer L Johnson; Kevin Entzminger; Avni Jain; David P Heaner; Ivan A Morales; Thomas M Truskett; Jennifer A Maynard; Raquel L Lieberman
Journal:  Proteins       Date:  2014-03-24

10.  Correlated rigid modes in protein families.

Authors:  D A Striegel; D Wojtowicz; T M Przytycka; V Periwal
Journal:  Phys Biol       Date:  2016-04-11       Impact factor: 2.583

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