Literature DB >> 22658725

Is 'forward' the same as 'plus'?…and other adventures in SNP allele nomenclature.

Sarah C Nelson, Kimberly F Doheny, Cathy C Laurie, Daniel B Mirel.   

Abstract

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Year:  2012        PMID: 22658725      PMCID: PMC6099125          DOI: 10.1016/j.tig.2012.05.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


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  5 in total

1.  The DNA sequence of human chromosome 22.

Authors:  I Dunham; N Shimizu; B A Roe; S Chissoe; A R Hunt; J E Collins; R Bruskiewich; D M Beare; M Clamp; L J Smink; R Ainscough; J P Almeida; A Babbage; C Bagguley; J Bailey; K Barlow; K N Bates; O Beasley; C P Bird; S Blakey; A M Bridgeman; D Buck; J Burgess; W D Burrill; K P O'Brien
Journal:  Nature       Date:  1999-12-02       Impact factor: 49.962

2.  Integrating common and rare genetic variation in diverse human populations.

Authors:  David M Altshuler; Richard A Gibbs; Leena Peltonen; David M Altshuler; Richard A Gibbs; Leena Peltonen; Emmanouil Dermitzakis; Stephen F Schaffner; Fuli Yu; Leena Peltonen; Emmanouil Dermitzakis; Penelope E Bonnen; David M Altshuler; Richard A Gibbs; Paul I W de Bakker; Panos Deloukas; Stacey B Gabriel; Rhian Gwilliam; Sarah Hunt; Michael Inouye; Xiaoming Jia; Aarno Palotie; Melissa Parkin; Pamela Whittaker; Fuli Yu; Kyle Chang; Alicia Hawes; Lora R Lewis; Yanru Ren; David Wheeler; Richard A Gibbs; Donna Marie Muzny; Chris Barnes; Katayoon Darvishi; Matthew Hurles; Joshua M Korn; Kati Kristiansson; Charles Lee; Steven A McCarrol; James Nemesh; Emmanouil Dermitzakis; Alon Keinan; Stephen B Montgomery; Samuela Pollack; Alkes L Price; Nicole Soranzo; Penelope E Bonnen; Richard A Gibbs; Claudia Gonzaga-Jauregui; Alon Keinan; Alkes L Price; Fuli Yu; Verneri Anttila; Wendy Brodeur; Mark J Daly; Stephen Leslie; Gil McVean; Loukas Moutsianas; Huy Nguyen; Stephen F Schaffner; Qingrun Zhang; Mohammed J R Ghori; Ralph McGinnis; William McLaren; Samuela Pollack; Alkes L Price; Stephen F Schaffner; Fumihiko Takeuchi; Sharon R Grossman; Ilya Shlyakhter; Elizabeth B Hostetter; Pardis C Sabeti; Clement A Adebamowo; Morris W Foster; Deborah R Gordon; Julio Licinio; Maria Cristina Manca; Patricia A Marshall; Ichiro Matsuda; Duncan Ngare; Vivian Ota Wang; Deepa Reddy; Charles N Rotimi; Charmaine D Royal; Richard R Sharp; Changqing Zeng; Lisa D Brooks; Jean E McEwen
Journal:  Nature       Date:  2010-09-02       Impact factor: 49.962

3.  SGD: Saccharomyces Genome Database.

Authors:  J M Cherry; C Adler; C Ball; S A Chervitz; S S Dwight; E T Hester; Y Jia; G Juvik; T Roe; M Schroeder; S Weng; D Botstein
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

4.  A second generation human haplotype map of over 3.1 million SNPs.

Authors:  Kelly A Frazer; Dennis G Ballinger; David R Cox; David A Hinds; Laura L Stuve; Richard A Gibbs; John W Belmont; Andrew Boudreau; Paul Hardenbol; Suzanne M Leal; Shiran Pasternak; David A Wheeler; Thomas D Willis; Fuli Yu; Huanming Yang; Changqing Zeng; Yang Gao; Haoran Hu; Weitao Hu; Chaohua Li; Wei Lin; Siqi Liu; Hao Pan; Xiaoli Tang; Jian Wang; Wei Wang; Jun Yu; Bo Zhang; Qingrun Zhang; Hongbin Zhao; Hui Zhao; Jun Zhou; Stacey B Gabriel; Rachel Barry; Brendan Blumenstiel; Amy Camargo; Matthew Defelice; Maura Faggart; Mary Goyette; Supriya Gupta; Jamie Moore; Huy Nguyen; Robert C Onofrio; Melissa Parkin; Jessica Roy; Erich Stahl; Ellen Winchester; Liuda Ziaugra; David Altshuler; Yan Shen; Zhijian Yao; Wei Huang; Xun Chu; Yungang He; Li Jin; Yangfan Liu; Yayun Shen; Weiwei Sun; Haifeng Wang; Yi Wang; Ying Wang; Xiaoyan Xiong; Liang Xu; Mary M Y Waye; Stephen K W Tsui; Hong Xue; J Tze-Fei Wong; Luana M Galver; Jian-Bing Fan; Kevin Gunderson; Sarah S Murray; Arnold R Oliphant; Mark S Chee; Alexandre Montpetit; Fanny Chagnon; Vincent Ferretti; Martin Leboeuf; Jean-François Olivier; Michael S Phillips; Stéphanie Roumy; Clémentine Sallée; Andrei Verner; Thomas J Hudson; Pui-Yan Kwok; Dongmei Cai; Daniel C Koboldt; Raymond D Miller; Ludmila Pawlikowska; Patricia Taillon-Miller; Ming Xiao; Lap-Chee Tsui; William Mak; You Qiang Song; Paul K H Tam; Yusuke Nakamura; Takahisa Kawaguchi; Takuya Kitamoto; Takashi Morizono; Atsushi Nagashima; Yozo Ohnishi; Akihiro Sekine; Toshihiro Tanaka; Tatsuhiko Tsunoda; Panos Deloukas; Christine P Bird; Marcos Delgado; Emmanouil T Dermitzakis; Rhian Gwilliam; Sarah Hunt; Jonathan Morrison; Don Powell; Barbara E Stranger; Pamela Whittaker; David R Bentley; Mark J Daly; Paul I W de Bakker; Jeff Barrett; Yves R Chretien; Julian Maller; Steve McCarroll; Nick Patterson; Itsik Pe'er; Alkes Price; Shaun Purcell; Daniel J Richter; Pardis Sabeti; Richa Saxena; Stephen F Schaffner; Pak C Sham; Patrick Varilly; David Altshuler; Lincoln D Stein; Lalitha Krishnan; Albert Vernon Smith; Marcela K Tello-Ruiz; Gudmundur A Thorisson; Aravinda Chakravarti; Peter E Chen; David J Cutler; Carl S Kashuk; Shin Lin; Gonçalo R Abecasis; Weihua Guan; Yun Li; Heather M Munro; Zhaohui Steve Qin; Daryl J Thomas; Gilean McVean; Adam Auton; Leonardo Bottolo; Niall Cardin; Susana Eyheramendy; Colin Freeman; Jonathan Marchini; Simon Myers; Chris Spencer; Matthew Stephens; Peter Donnelly; Lon R Cardon; Geraldine Clarke; David M Evans; Andrew P Morris; Bruce S Weir; Tatsuhiko Tsunoda; James C Mullikin; Stephen T Sherry; Michael Feolo; Andrew Skol; Houcan Zhang; Changqing Zeng; Hui Zhao; Ichiro Matsuda; Yoshimitsu Fukushima; Darryl R Macer; Eiko Suda; Charles N Rotimi; Clement A Adebamowo; Ike Ajayi; Toyin Aniagwu; Patricia A Marshall; Chibuzor Nkwodimmah; Charmaine D M Royal; Mark F Leppert; Missy Dixon; Andy Peiffer; Renzong Qiu; Alastair Kent; Kazuto Kato; Norio Niikawa; Isaac F Adewole; Bartha M Knoppers; Morris W Foster; Ellen Wright Clayton; Jessica Watkin; Richard A Gibbs; John W Belmont; Donna Muzny; Lynne Nazareth; Erica Sodergren; George M Weinstock; David A Wheeler; Imtaz Yakub; Stacey B Gabriel; Robert C Onofrio; Daniel J Richter; Liuda Ziaugra; Bruce W Birren; Mark J Daly; David Altshuler; Richard K Wilson; Lucinda L Fulton; Jane Rogers; John Burton; Nigel P Carter; Christopher M Clee; Mark Griffiths; Matthew C Jones; Kirsten McLay; Robert W Plumb; Mark T Ross; Sarah K Sims; David L Willey; Zhu Chen; Hua Han; Le Kang; Martin Godbout; John C Wallenburg; Paul L'Archevêque; Guy Bellemare; Koji Saeki; Hongguang Wang; Daochang An; Hongbo Fu; Qing Li; Zhen Wang; Renwu Wang; Arthur L Holden; Lisa D Brooks; Jean E McEwen; Mark S Guyer; Vivian Ota Wang; Jane L Peterson; Michael Shi; Jack Spiegel; Lawrence M Sung; Lynn F Zacharia; Francis S Collins; Karen Kennedy; Ruth Jamieson; John Stewart
Journal:  Nature       Date:  2007-10-18       Impact factor: 49.962

5.  The multiple personalities of Watson and Crick strands.

Authors:  Reed A Cartwright; Dan Graur
Journal:  Biol Direct       Date:  2011-02-08       Impact factor: 4.540

  5 in total
  13 in total

1.  Population-specific genotype imputations using minimac or IMPUTE2.

Authors:  Elisabeth M van Leeuwen; Alexandros Kanterakis; Patrick Deelen; Mathijs V Kattenberg; P Eline Slagboom; Paul I W de Bakker; Cisca Wijmenga; Morris A Swertz; Dorret I Boomsma; Cornelia M van Duijn; Lennart C Karssen; Jouke Jan Hottenga
Journal:  Nat Protoc       Date:  2015-07-30       Impact factor: 13.491

2.  Strategies for processing and quality control of Illumina genotyping arrays.

Authors:  Shilin Zhao; Wang Jing; David C Samuels; Quanghu Sheng; Yu Shyr; Yan Guo
Journal:  Brief Bioinform       Date:  2018-09-28       Impact factor: 11.622

3.  Imputation and quality control steps for combining multiple genome-wide datasets.

Authors:  Shefali S Verma; Mariza de Andrade; Gerard Tromp; Helena Kuivaniemi; Elizabeth Pugh; Bahram Namjou-Khales; Shubhabrata Mukherjee; Gail P Jarvik; Leah C Kottyan; Amber Burt; Yuki Bradford; Gretta D Armstrong; Kimberly Derr; Dana C Crawford; Jonathan L Haines; Rongling Li; David Crosslin; Marylyn D Ritchie
Journal:  Front Genet       Date:  2014-12-11       Impact factor: 4.599

4.  Improved imputation accuracy in Hispanic/Latino populations with larger and more diverse reference panels: applications in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).

Authors:  Sarah C Nelson; Adrienne M Stilp; George J Papanicolaou; Kent D Taylor; Jerome I Rotter; Timothy A Thornton; Cathy C Laurie
Journal:  Hum Mol Genet       Date:  2016-06-26       Impact factor: 6.150

5.  Recipient and donor genetic variants associated with mortality after allogeneic hematopoietic cell transplantation.

Authors:  Paul J Martin; David M Levine; Barry E Storer; Sarah C Nelson; Xinyuan Dong; John A Hansen
Journal:  Blood Adv       Date:  2020-07-28

6.  The National Longitudinal Study of Adolescent to Adult Health (Add Health) sibling pairs genome-wide data.

Authors:  Matthew B McQueen; Jason D Boardman; Benjamin W Domingue; Andrew Smolen; Joyce Tabor; Ley Killeya-Jones; Carolyn T Halpern; Eric A Whitsel; Kathleen Mullan Harris
Journal:  Behav Genet       Date:  2014-11-07       Impact factor: 2.805

7.  Illumina human exome genotyping array clustering and quality control.

Authors:  Yan Guo; Jing He; Shilin Zhao; Hui Wu; Xue Zhong; Quanhu Sheng; David C Samuels; Yu Shyr; Jirong Long
Journal:  Nat Protoc       Date:  2014-10-16       Impact factor: 13.491

8.  Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records.

Authors:  David R Crosslin; Gerard Tromp; Amber Burt; Daniel S Kim; Shefali S Verma; Anastasia M Lucas; Yuki Bradford; Dana C Crawford; Sebastian M Armasu; John A Heit; M Geoffrey Hayes; Helena Kuivaniemi; Marylyn D Ritchie; Gail P Jarvik; Mariza de Andrade
Journal:  Front Genet       Date:  2014-11-04       Impact factor: 4.599

9.  TheSNPpit-A High Performance Database System for Managing Large Scale SNP Data.

Authors:  Eildert Groeneveld; Helmut Lichtenberg
Journal:  PLoS One       Date:  2016-10-25       Impact factor: 3.240

10.  GACT: a Genome build and Allele definition Conversion Tool for SNP imputation and meta-analysis in genetic association studies.

Authors:  Arvis Sulovari; Dawei Li
Journal:  BMC Genomics       Date:  2014-07-19       Impact factor: 3.969

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