Literature DB >> 22654178

Inferring and quantifying the role of an intrinsic current in a mechanism for a half-center bursting oscillation: A dominant scale and hybrid dynamical systems analysis.

Robert Clewley1.   

Abstract

This paper illustrates an informatic technique for inferring and quantifying the dynamic role of a single intrinsic current in a mechanism of neural bursting activity. We analyze the patterns of the most dominant currents in a model of half-center oscillation in the leech heartbeat central pattern generator. We find that the patterns of dominance change substantially over a cycle, allowing different local reductions to be applied to the model. The result is a hybrid dynamical systems model, which is a piecewise representation of the mechanism combining multiple vector fields and discrete state changes. The simulation of such a model tests explicit hypotheses about the mechanism and is a novel way to retain both mathematical clarity and scientific detail in answering mechanistic questions about a complex model. Several insights into the central mechanism of "escape-release" in the model are elucidated by this analysis and compared with previous studies. The broader application and extension of this technique is also discussed.

Keywords:  Bursting dynamics; Central pattern generation; Dominant scale analysis; Hybrid dynamical systems reduction; Model inference; Neuroinformatics

Year:  2011        PMID: 22654178      PMCID: PMC3101323          DOI: 10.1007/s10867-011-9220-1

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  17 in total

1.  Bursting in leech heart interneurons: cell-autonomous and network-based mechanisms.

Authors:  Gennady S Cymbalyuk; Quentin Gaudry; Mark A Masino; Ronald L Calabrese
Journal:  J Neurosci       Date:  2002-12-15       Impact factor: 6.167

2.  States of high conductance in a large-scale model of the visual cortex.

Authors:  Michael Shelley; David McLaughlin; Robert Shapley; Jacob Wielaard
Journal:  J Comput Neurosci       Date:  2002 Sep-Oct       Impact factor: 1.621

3.  Using a hybrid neural system to reveal regulation of neuronal network activity by an intrinsic current.

Authors:  Michael Sorensen; Stephen DeWeerth; Gennady Cymbalyuk; Ronald L Calabrese
Journal:  J Neurosci       Date:  2004-06-09       Impact factor: 6.167

4.  Encoding the fine-structured mechanism of action potential dynamics with qualitative motifs.

Authors:  Robert Clewley
Journal:  J Comput Neurosci       Date:  2010-08-18       Impact factor: 1.621

5.  Computation of the phase response curve: a direct numerical approach.

Authors:  W Govaerts; B Sautois
Journal:  Neural Comput       Date:  2006-04       Impact factor: 2.026

Review 6.  Principles of rhythmic motor pattern generation.

Authors:  E Marder; R L Calabrese
Journal:  Physiol Rev       Date:  1996-07       Impact factor: 37.312

7.  Modeling the leech heartbeat elemental oscillator. I. Interactions of intrinsic and synaptic currents.

Authors:  F Nadim; O H Olsen; E De Schutter; R L Calabrese
Journal:  J Comput Neurosci       Date:  1995-09       Impact factor: 1.621

8.  Dominant ionic mechanisms explored in spiking and bursting using local low-dimensional reductions of a biophysically realistic model neuron.

Authors:  Robert Clewley; Cristina Soto-Treviño; Farzan Nadim
Journal:  J Comput Neurosci       Date:  2008-07-02       Impact factor: 1.621

9.  Control of oscillation periods and phase durations in half-center central pattern generators: a comparative mechanistic analysis.

Authors:  Silvia Daun; Jonathan E Rubin; Ilya A Rybak
Journal:  J Comput Neurosci       Date:  2009-01-06       Impact factor: 1.621

10.  How does maintenance of network activity depend on endogenous dynamics of isolated neurons?

Authors:  Andrey V Olypher; Ronald L Calabrese
Journal:  Neural Comput       Date:  2009-06       Impact factor: 2.026

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  5 in total

1.  Robust phase-waves in chains of half-center oscillators.

Authors:  Calvin Zhang; Timothy J Lewis
Journal:  J Math Biol       Date:  2016-10-13       Impact factor: 2.259

2.  Phase response properties of half-center oscillators.

Authors:  Calvin Zhang; Timothy J Lewis
Journal:  J Comput Neurosci       Date:  2013-02-28       Impact factor: 1.621

3.  Determining the contributions of divisive and subtractive feedback in the Hodgkin-Huxley model.

Authors:  Sevgi Sengül; Robert Clewley; Richard Bertram; Joël Tabak
Journal:  J Comput Neurosci       Date:  2014-06-25       Impact factor: 1.621

4.  The role of phase shifts of sensory inputs in walking revealed by means of phase reduction.

Authors:  Azamat Yeldesbay; Tibor Tóth; Silvia Daun
Journal:  J Comput Neurosci       Date:  2018-03-27       Impact factor: 1.621

5.  Hybrid models and biological model reduction with PyDSTool.

Authors:  Robert Clewley
Journal:  PLoS Comput Biol       Date:  2012-08-09       Impact factor: 4.475

  5 in total

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