Literature DB >> 18594958

Dominant ionic mechanisms explored in spiking and bursting using local low-dimensional reductions of a biophysically realistic model neuron.

Robert Clewley1, Cristina Soto-Treviño, Farzan Nadim.   

Abstract

The large number of variables involved in many biophysical models can conceal potentially simple dynamical mechanisms governing the properties of its solutions and the transitions between them as parameters are varied. To address this issue, we extend a novel model reduction method, based on "scales of dominance," to multi-compartment models. We use this method to systematically reduce the dimension of a two-compartment conductance-based model of a crustacean pyloric dilator (PD) neuron that exhibits distinct modes of oscillation--tonic spiking, intermediate bursting and strong bursting. We divide trajectories into intervals dominated by a smaller number of variables, resulting in a locally reduced hybrid model whose dimension varies between two and six in different temporal regimes. The reduced model exhibits the same modes of oscillation as the 16 dimensional model over a comparable parameter range, and requires fewer ad hoc simplifications than a more traditional reduction to a single, globally valid model. The hybrid model highlights low-dimensional organizing structure in the dynamics of the PD neuron, and the dependence of its oscillations on parameters such as the maximal conductances of calcium currents. Our technique could be used to build hybrid low-dimensional models from any large multi-compartment conductance-based model in order to analyze the interactions between different modes of activity.

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Year:  2008        PMID: 18594958      PMCID: PMC2710314          DOI: 10.1007/s10827-008-0099-1

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  19 in total

1.  Dynamics of spiking neurons with electrical coupling.

Authors:  C C Chow; N Kopell
Journal:  Neural Comput       Date:  2000-07       Impact factor: 2.026

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Review 4.  The dynamic clamp comes of age.

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5.  Computational model of electrically coupled, intrinsically distinct pacemaker neurons.

Authors:  Cristina Soto-Treviño; Pascale Rabbah; Eve Marder; Farzan Nadim
Journal:  J Neurophysiol       Date:  2005-02-23       Impact factor: 2.714

Review 6.  Understanding circuit dynamics using the stomatogastric nervous system of lobsters and crabs.

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7.  Dissection and reduction of a modeled bursting neuron.

Authors:  R J Butera; J W Clark; J H Byrne
Journal:  J Comput Neurosci       Date:  1996-09       Impact factor: 1.621

8.  Excitatory and inhibitory interactions in localized populations of model neurons.

Authors:  H R Wilson; J D Cowan
Journal:  Biophys J       Date:  1972-01       Impact factor: 4.033

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Journal:  Biol Cybern       Date:  1992       Impact factor: 2.086

10.  Dopamine modulation of calcium currents in pyloric neurons of the lobster stomatogastric ganglion.

Authors:  Bruce R Johnson; Peter Kloppenburg; Ronald M Harris-Warrick
Journal:  J Neurophysiol       Date:  2003-08       Impact factor: 2.714

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  7 in total

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4.  Determining the contributions of divisive and subtractive feedback in the Hodgkin-Huxley model.

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5.  Membrane resonance in bursting pacemaker neurons of an oscillatory network is correlated with network frequency.

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Journal:  J Neurosci       Date:  2009-05-20       Impact factor: 6.167

6.  Quantifying the relative contributions of divisive and subtractive feedback to rhythm generation.

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Journal:  PLoS Comput Biol       Date:  2011-04-21       Impact factor: 4.475

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  7 in total

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