Literature DB >> 22645347

Structure of the receptor-binding carboxy-terminal domain of bacteriophage T7 tail fibers.

Carmela Garcia-Doval1, Mark J van Raaij.   

Abstract

The six bacteriophage T7 tail fibers, homo-trimers of gene product 17, are thought to be responsible for the first specific, albeit reversible, attachment to Escherichia coli lipopolysaccharide. The protein trimer forms kinked fibers comprised of an amino-terminal tail-attachment domain, a slender shaft, and a carboxyl-terminal domain composed of several nodules. Previously, we expressed, purified, and crystallized a carboxyl-terminal fragment comprising residues 371-553. Here, we report the structure of this protein trimer, solved using anomalous diffraction and refined at 2 Å resolution. Amino acids 371-447 form a tapered pyramid with a triangular cross-section composed of interlocked β-sheets from each of the three chains. The triangular pyramid domain has three α-helices at its narrow end, which are connected to a carboxyl-terminal three-blade β-propeller tip domain by flexible loops. The monomers of this tip domain each contain an eight-stranded β-sandwich. The exact topology of the β-sandwich fold is novel, but similar to that of knob domains of other viral fibers and the phage Sf6 needle. Several host-range change mutants have been mapped to loops located on the top of this tip domain, suggesting that this surface of the tip domain interacts with receptors on the cell surface.

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Year:  2012        PMID: 22645347      PMCID: PMC3386108          DOI: 10.1073/pnas.1119719109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  60 in total

1.  Structure of the bacteriophage T4 long tail fiber receptor-binding tip.

Authors:  Sergio G Bartual; José M Otero; Carmela Garcia-Doval; Antonio L Llamas-Saiz; Richard Kahn; Gavin C Fox; Mark J van Raaij
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

2.  Molecular rearrangements involved in the capsid shell maturation of bacteriophage T7.

Authors:  Alina Ionel; Javier A Velázquez-Muriel; Daniel Luque; Ana Cuervo; José R Castón; José M Valpuesta; Jaime Martín-Benito; José L Carrascosa
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

3.  Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery.

Authors:  Xabier Agirrezabala; Jaime Martín-Benito; Mikel Valle; José M González; Alfonso Valencia; José María Valpuesta; José L Carrascosa
Journal:  J Mol Biol       Date:  2005-04-15       Impact factor: 5.469

4.  Changes in bacteriophage T7 virion structure at the initiation of infection.

Authors:  Priscilla Kemp; L René Garcia; Ian J Molineux
Journal:  Virology       Date:  2005-09-30       Impact factor: 3.616

5.  Lactococcal bacteriophage p2 receptor-binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses.

Authors:  Silvia Spinelli; Aline Desmyter; C Theo Verrips; Hans J W de Haard; Sylvain Moineau; Christian Cambillau
Journal:  Nat Struct Mol Biol       Date:  2005-12-04       Impact factor: 15.369

6.  Atomic structure of bacteriophage Sf6 tail needle knob.

Authors:  Anshul Bhardwaj; Ian J Molineux; Sherwood R Casjens; Gino Cingolani
Journal:  J Biol Chem       Date:  2011-06-25       Impact factor: 5.157

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Structural basis for the recognition and cleavage of polysialic acid by the bacteriophage K1F tailspike protein EndoNF.

Authors:  Eike Christian Schulz; David Schwarzer; Martin Frank; Katharina Stummeyer; Martina Mühlenhoff; Achim Dickmanns; Rita Gerardy-Schahn; Ralf Ficner
Journal:  J Mol Biol       Date:  2010-01-22       Impact factor: 5.469

9.  The Buccaneer software for automated model building. 1. Tracing protein chains.

Authors:  Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  42 in total

1.  Crystallization of the C-terminal domain of the bacteriophage T5 L-shaped fibre.

Authors:  Carmela Garcia-Doval; Daniel Luque; José R Castón; Pascale Boulanger; Mark J van Raaij
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-11-28

Review 2.  Bacteriophage vehicles for phage display: biology, mechanism, and application.

Authors:  Walead Ebrahimizadeh; Masoumeh Rajabibazl
Journal:  Curr Microbiol       Date:  2014-03-18       Impact factor: 2.188

Review 3.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

4.  Cyanophage A-1(L) Adsorbs to Lipopolysaccharides of Anabaena sp. Strain PCC 7120 via the Tail Protein Lipopolysaccharide-Interacting Protein (ORF36).

Authors:  Zhenzhen Xiong; Yali Wang; Yanling Dong; Qiya Zhang; Xudong Xu
Journal:  J Bacteriol       Date:  2019-01-11       Impact factor: 3.490

5.  The outer-membrane protein TolC of Vibrio cholerae serves as a second cell-surface receptor for the VP3 phage.

Authors:  Fenxia Fan; Xu Li; Bo Pang; Cheng Zhang; Zhe Li; Lijuan Zhang; Jie Li; Jingyun Zhang; Meiying Yan; Weili Liang; Biao Kan
Journal:  J Biol Chem       Date:  2017-12-19       Impact factor: 5.157

6.  Outer membrane proteins ail and OmpF of Yersinia pestis are involved in the adsorption of T7-related bacteriophage Yep-phi.

Authors:  Xiangna Zhao; Yujun Cui; Yanfeng Yan; Zongmin Du; Yafang Tan; Huiying Yang; Yujing Bi; Pingping Zhang; Lei Zhou; Dongsheng Zhou; Yanping Han; Yajun Song; Xiaoyi Wang; Ruifu Yang
Journal:  J Virol       Date:  2013-09-04       Impact factor: 5.103

7.  Structural characterization of the bacteriophage T7 tail machinery.

Authors:  Ana Cuervo; Mar Pulido-Cid; Mónica Chagoyen; Rocío Arranz; Verónica A González-García; Carmela Garcia-Doval; José R Castón; José M Valpuesta; Mark J van Raaij; Jaime Martín-Benito; José L Carrascosa
Journal:  J Biol Chem       Date:  2013-07-24       Impact factor: 5.157

8.  Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.

Authors:  Andriy Kryshtafovych; John Moult; Patrick Bales; J Fernando Bazan; Marco Biasini; Alex Burgin; Chen Chen; Frank V Cochran; Timothy K Craig; Rhiju Das; Deborah Fass; Carmela Garcia-Doval; Osnat Herzberg; Donald Lorimer; Hartmut Luecke; Xiaolei Ma; Daniel C Nelson; Mark J van Raaij; Forest Rohwer; Anca Segall; Victor Seguritan; Kornelius Zeth; Torsten Schwede
Journal:  Proteins       Date:  2014-02

9.  Phage-mediated counting by the naked eye of miRNA molecules at attomolar concentrations in a Petri dish.

Authors:  Xin Zhou; Peng Cao; Ye Zhu; Wuguang Lu; Ning Gu; Chuanbin Mao
Journal:  Nat Mater       Date:  2015-08-17       Impact factor: 43.841

10.  Yersinia enterocolitica-Specific Infection by Bacteriophages TG1 and ϕR1-RT Is Dependent on Temperature-Regulated Expression of the Phage Host Receptor OmpF.

Authors:  Carlos G Leon-Velarde; Lotta Happonen; Maria Pajunen; Katarzyna Leskinen; Andrew M Kropinski; Laura Mattinen; Monika Rajtor; Joanna Zur; Darren Smith; Shu Chen; Ayesha Nawaz; Roger P Johnson; Joseph A Odumeru; Mansel W Griffiths; Mikael Skurnik
Journal:  Appl Environ Microbiol       Date:  2016-08-15       Impact factor: 4.792

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