Literature DB >> 22641610

Application of glycoproteomics for the discovery of biomarkers in lung cancer.

Qing Kay Li1, Edward Gabrielson, Hui Zhang.   

Abstract

Lung cancer is the leading cause of cancer-related deaths in the United States. Approximately 40-60% of lung cancer patients present with locally advanced or metastatic disease at the time of diagnosis. Lung cancer development and progression are a multistep process that is characterized by abnormal gene and protein expressions ultimately leading to phenotypic change. Glycoproteins have long been recognized to play fundamental roles in many physiological and pathological processes, particularly in cancer genesis and progression. In order to improve the survival rate of lung cancer patients, the discovery of early diagnostic and prognostic biomarkers is urgently needed. Herein, we reviewed the recent technological developments of glycoproteomics and published data in the field of glycoprotein biomarkers in lung cancer, and discussed their utility and limitations for the discovery of potential biomarkers in lung cancer. Although numerous papers have already acknowledged the importance of the discovery of cancer biomarkers, the systemic study of glycoproteins in lung cancer using glycoproteomic approaches is still suboptimal. Recent development in the glycoproteomics will provide new platforms for identification of potential protein biomarkers in lung cancers.
© 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

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Year:  2012        PMID: 22641610      PMCID: PMC5321538          DOI: 10.1002/prca.201100042

Source DB:  PubMed          Journal:  Proteomics Clin Appl        ISSN: 1862-8346            Impact factor:   3.494


  84 in total

1.  Outcome of bronchial carcinoma in situ.

Authors:  B J Venmans; T J van Boxem; E F Smit; P E Postmus; T G Sutedja
Journal:  Chest       Date:  2000-06       Impact factor: 9.410

2.  Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins.

Authors:  Hiroyuki Kaji; Haruna Saito; Yoshio Yamauchi; Takashi Shinkawa; Masato Taoka; Jun Hirabayashi; Ken-ichi Kasai; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

Review 3.  Glycosylation changes as markers for the diagnosis and treatment of human disease.

Authors:  Lily Tong; Gautam Baskaran; Mark B Jones; Jun Kyu Rhee; Kevin J Yarema
Journal:  Biotechnol Genet Eng Rev       Date:  2003

4.  Development of serum glycoproteomic profiling technique; simultaneous identification of glycosylation sites and site-specific quantification of glycan structure changes.

Authors:  Koji Ueda; Sachiko Takami; Naomi Saichi; Yataro Daigo; Nobuhisa Ishikawa; Nobuoki Kohno; Masaru Katsumata; Akio Yamane; Minoru Ota; Taka-Aki Sato; Yusuke Nakamura; Hidewaki Nakagawa
Journal:  Mol Cell Proteomics       Date:  2010-09       Impact factor: 5.911

5.  Highly specific enrichment of glycopeptides using boronic acid-functionalized mesoporous silica.

Authors:  Yawei Xu; Zhangxiong Wu; Lijuan Zhang; Haojie Lu; Pengyuan Yang; Paul A Webley; Dongyuan Zhao
Journal:  Anal Chem       Date:  2009-01-01       Impact factor: 6.986

Review 6.  Progress in chemoprevention drug development: the promise of molecular biomarkers for prevention of intraepithelial neoplasia and cancer--a plan to move forward.

Authors:  Gary J Kelloff; Scott M Lippman; Andrew J Dannenberg; Caroline C Sigman; Homer L Pearce; Brian J Reid; Eva Szabo; V Craig Jordan; Margaret R Spitz; Gordon B Mills; Vali A Papadimitrakopoulou; Reuben Lotan; Bharat B Aggarwal; Robert S Bresalier; Jeri Kim; Banu Arun; Karen H Lu; Melanie E Thomas; Helen E Rhodes; Molly A Brewer; Michele Follen; Dong M Shin; Howard L Parnes; Jill M Siegfried; Alison A Evans; William J Blot; Wong-Ho Chow; Patricia L Blount; Carlo C Maley; Kenneth K Wang; Stephen Lam; J Jack Lee; Steven M Dubinett; Paul F Engstrom; Frank L Meyskens; Joyce O'Shaughnessy; Ernest T Hawk; Bernard Levin; William G Nelson; Waun Ki Hong
Journal:  Clin Cancer Res       Date:  2006-06-15       Impact factor: 12.531

7.  Protein expression in human non-small cell lung cancer: a systematic database.

Authors:  Rena Isabel Bührens; Julius Titus Amelung; Marc André Reymond; Morris Beshay
Journal:  Pathobiology       Date:  2009-11-30       Impact factor: 4.342

8.  A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation.

Authors:  Per Hägglund; Jakob Bunkenborg; Felix Elortza; Ole Nørregaard Jensen; Peter Roepstorff
Journal:  J Proteome Res       Date:  2004 May-Jun       Impact factor: 4.466

9.  Glycoproteomic analysis of human lung adenocarcinomas using glycoarrays and tandem mass spectrometry: differential expression and glycosylation patterns of vimentin and fetuin A isoforms.

Authors:  Jung-Hyun Rho; Michael H A Roehrl; Julia Y Wang
Journal:  Protein J       Date:  2009-05       Impact factor: 2.371

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  15 in total

1.  Glycoproteomic analysis of bronchoalveolar lavage (BAL) fluid identifies tumor-associated glycoproteins from lung adenocarcinoma.

Authors:  Qing Kay Li; Punit Shah; Yan Li; Paul O Aiyetan; Jing Chen; Rex Yung; Daniela Molena; Edward Gabrielson; Frederic Askin; Daniel W Chan; Hui Zhang
Journal:  J Proteome Res       Date:  2013-07-11       Impact factor: 4.466

Review 2.  Characterization of disease-associated N-linked glycoproteins.

Authors:  Yuan Tian; Hui Zhang
Journal:  Proteomics       Date:  2013-02       Impact factor: 3.984

3.  The utility of a novel triple marker (combination of TTF1, napsin A, and p40) in the subclassification of non-small cell lung cancer.

Authors:  Ming-Hui Ao; Hui Zhang; Lynne Sakowski; Rajni Sharma; Peter B Illei; Edward Gabrielson; Frederic Askin; Qing Kay Li
Journal:  Hum Pathol       Date:  2014-01-25       Impact factor: 3.466

4.  Mass-Selected Site-Specific Core-Fucosylation of Serum Proteins in Hepatocellular Carcinoma.

Authors:  Haidi Yin; Zhijing Tan; Jing Wu; Jianhui Zhu; Kerby A Shedden; Jorge Marrero; David M Lubman
Journal:  J Proteome Res       Date:  2015-10-02       Impact factor: 4.466

Review 5.  Glycoproteomics using fluid-based specimens in the discovery of lung cancer protein biomarkers: promise and challenge.

Authors:  Qing Kay Li; Ed Gabrielson; Frederic Askin; Daniel W Chan; Hui Zhang
Journal:  Proteomics Clin Appl       Date:  2013-01       Impact factor: 3.494

6.  ESI-LC-MS Method for Haptoglobin Fucosylation Analysis in Hepatocellular Carcinoma and Liver Cirrhosis.

Authors:  Yiwei Zhang; Jianhui Zhu; Haidi Yin; Jorge Marrero; Xin-Xiang Zhang; David M Lubman
Journal:  J Proteome Res       Date:  2015-11-03       Impact factor: 4.466

Review 7.  Coupling enrichment methods with proteomics for understanding and treating disease.

Authors:  Amit Kumar; Deniz Baycin-Hizal; Joseph Shiloach; Michael A Bowen; Michael J Betenbaugh
Journal:  Proteomics Clin Appl       Date:  2015-01-19       Impact factor: 3.603

8.  Clinical proteomic biomarkers: relevant issues on study design & technical considerations in biomarker development.

Authors:  Maria Frantzi; Akshay Bhat; Agnieszka Latosinska
Journal:  Clin Transl Med       Date:  2014-03-29

9.  Aberrant Mucin5B expression in lung adenocarcinomas detected by iTRAQ labeling quantitative proteomics and immunohistochemistry.

Authors:  Yan Li; Xiangchun Wang; Minghui Ao; Edward Gabrielson; Frederic Askin; Hui Zhang; Qing Kay Li
Journal:  Clin Proteomics       Date:  2013-11-01       Impact factor: 3.988

10.  Decreased core-fucosylation contributes to malignancy in gastric cancer.

Authors:  Yun-Peng Zhao; Xin-Yun Xu; Meng Fang; Hao Wang; Qing You; Chang-Hong Yi; Jun Ji; Xing Gu; Ping-Ting Zhou; Cheng Cheng; Chun-Fang Gao
Journal:  PLoS One       Date:  2014-04-14       Impact factor: 3.240

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