Literature DB >> 22628517

Complete genome sequence of Streptococcus pneumoniae strain ST556, a multidrug-resistant isolate from an otitis media patient.

Guiling Li1, Fen Z Hu, Xianwei Yang, Yujun Cui, Jun Yang, Fen Qu, George F Gao, Jing-Ren Zhang.   

Abstract

Streptococcus pneumoniae is a major pathogen causing bacterial infection in the middle ear of humans. We previously used S. pneumoniae strain ST556, a low-passage 19F isolate from an otitis media patient, to perform a whole-genome screen for ear infection-associated genes in a chinchilla model. This report presents the complete genome sequence of ST556. The genome sequence will provide information complementary to the experimental data from our genetic study of this strain.

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Year:  2012        PMID： 22628517      PMCID： PMC3370858          DOI： 10.1128/JB.00363-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  MM1, a temperate bacteriophage of the type 23F Spanish/USA multiresistant epidemic clone of Streptococcus pneumoniae: structural analysis of the site-specific integration system.

Authors:  E Gindreau; R López; P García
Journal:  J Virol       Date:  2000-09       Impact factor: 5.103

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors:  H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

4.  Alignment of whole genomes.

Authors:  A L Delcher; S Kasif; R D Fleischmann; J Peterson; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-06-01       Impact factor: 16.971

5.  Discovery of a new capsular serotype (6C) within serogroup 6 of Streptococcus pneumoniae.

Authors:  In Ho Park; David G Pritchard; Rob Cartee; Angela Brandao; Maria Cristina C Brandileone; Moon H Nahm
Journal:  J Clin Microbiol       Date:  2007-01-31       Impact factor: 5.948

6.  Pneumococcal conjugate vaccine serotypes of Streptococcus pneumoniae isolates and the antimicrobial susceptibility of such isolates in children with otitis media.

Authors:  M L Joloba; A Windau; S Bajaksouzian; P C Appelbaum; W P Hausdorff; M R Jacobs
Journal:  Clin Infect Dis       Date:  2001-10-04       Impact factor: 9.079

7.  Microbiology of acute otitis media in Costa Rican children.

Authors:  A Arguedas; C Loaiza; A Perez; F Vargas; M Herrera; G Rodriguez; A Gutierrez; E Mohs
Journal:  Pediatr Infect Dis J       Date:  1998-08       Impact factor: 2.129

8.  First report of putative Streptococcus pneumoniae serotype 6D among nasopharyngeal isolates from Fijian children.

Authors:  Ping Jin; Fanrong Kong; Meng Xiao; Shahin Oftadeh; Fei Zhou; Chunyi Liu; Fiona Russell; Gwendolyn L Gilbert
Journal:  J Infect Dis       Date:  2009-11-01       Impact factor: 5.226

9.  Genetic requirement for pneumococcal ear infection.

Authors:  Huaiqing Chen; Yueyun Ma; Jun Yang; Christopher J O'Brien; Scott L Lee; Joseph E Mazurkiewicz; Sauli Haataja; Jing-Hua Yan; George F Gao; Jing-Ren Zhang
Journal:  PLoS One       Date:  2007-08-13       Impact factor: 3.240

10.  Insights into the genome of large sulfur bacteria revealed by analysis of single filaments.

Authors:  Marc Mussmann; Fen Z Hu; Michael Richter; Dirk de Beer; André Preisler; Bo B Jørgensen; Marcel Huntemann; Frank Oliver Glöckner; Rudolf Amann; Werner J H Koopman; Roger S Lasken; Benjamin Janto; Justin Hogg; Paul Stoodley; Robert Boissy; Garth D Ehrlich
Journal:  PLoS Biol       Date:  2007-09       Impact factor: 8.029
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  10 in total

1.  qDNAmod: a statistical model-based tool to reveal intercellular heterogeneity of DNA modification from SMRT sequencing data.

Authors:  Zhixing Feng; Jing Li; Jing-Ren Zhang; Xuegong Zhang
Journal:  Nucleic Acids Res       Date:  2014-11-17       Impact factor: 16.971

2.  Transcriptional Repressor PtvR Regulates Phenotypic Tolerance to Vancomycin in Streptococcus pneumoniae.

Authors:  Xue Liu; Jing-Wen Li; Zhixing Feng; Youfu Luo; Jan-Willem Veening; Jing-Ren Zhang
Journal:  J Bacteriol       Date:  2017-06-27       Impact factor: 3.490

3.  Dynamic changes in the Streptococcus pneumoniae transcriptome during transition from biofilm formation to invasive disease upon influenza A virus infection.

Authors:  Melinda M Pettigrew; Laura R Marks; Yong Kong; Janneane F Gent; Hazeline Roche-Hakansson; Anders P Hakansson
Journal:  Infect Immun       Date:  2014-08-18       Impact factor: 3.441

4.  Sequence elements upstream of the core promoter are necessary for full transcription of the capsule gene operon in Streptococcus pneumoniae strain D39.

Authors:  Zhensong Wen; Odeniel Sertil; Yongxin Cheng; Shanshan Zhang; Xue Liu; Wen-Ching Wang; Jing-Ren Zhang
Journal:  Infect Immun       Date:  2015-03-02       Impact factor: 3.441

Review 5.  Panel 4: Report of the Microbiology Panel.

Authors:  Stephen J Barenkamp; Tasnee Chonmaitree; Anders P Hakansson; Terho Heikkinen; Samantha King; Johanna Nokso-Koivisto; Laura A Novotny; Janak A Patel; Melinda Pettigrew; W Edward Swords
Journal:  Otolaryngol Head Neck Surg       Date:  2017-04       Impact factor: 3.497

6.  Observation of Pneumococcal Phase Variation in Colony Morphology.

Authors:  Jing Li; Juanjuan Wang; Fangfang Jiao; Jing-Ren Zhang
Journal:  Bio Protoc       Date:  2017-08-05

7.  Novel Immunoprotective Proteins of Streptococcus pneumoniae Identified by Opsonophagocytosis Killing Screen.

Authors:  Yang Wang; Zhensong Wen; Xiaolei Pan; David E Briles; Yongqun He; Jing-Ren Zhang
Journal:  Infect Immun       Date:  2018-08-22       Impact factor: 3.441

8.  Mapping-free variant calling using haplotype reconstruction from k-mer frequencies.

Authors:  Peter A Audano; Shashidhar Ravishankar; Fredrik O Vannberg
Journal:  Bioinformatics       Date:  2018-05-15       Impact factor: 6.937

9.  Vaccine Prophylaxis of Pneumococcal Infections in Children under Conditions of Severe Flood in the Amur River Basin.

Authors:  Aleksandr G Chuchalin; Gennadiy G Onishchenko; Victor P Kolosov; Olga P Kurganova; Tatiana A Zaitseva; Leonid G Manakov; Galina N Kholodok; Juliy M Perelman; Roman S Kozlov; Natalia M Ivakhnishina; Olga E Trotsenko; Albina P Bondarenko
Journal:  Interdiscip Perspect Infect Dis       Date:  2019-02-18

10.  Functional vulnerability of liver macrophages to capsules defines virulence of blood-borne bacteria.

Authors:  Haoran An; Chenyun Qian; Yijia Huang; Jing Li; Xianbin Tian; Jiaying Feng; Jiao Hu; Yujie Fang; Fangfang Jiao; Yuna Zeng; Xueting Huang; Xianbin Meng; Xue Liu; Xin Lin; Zhutian Zeng; Martin Guilliams; Alain Beschin; Yongwen Chen; Yuzhang Wu; Jing Wang; Marco Rinaldo Oggioni; John Leong; Jan-Willem Veening; Haiteng Deng; Rong Zhang; Hui Wang; Jiang Wu; Yan Cui; Jing-Ren Zhang
Journal:  J Exp Med       Date:  2022-03-08       Impact factor: 17.579
  10 in total

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