Literature DB >> 22628504

Genome sequences of two plant growth-promoting fluorescent Pseudomonas strains, R62 and R81.

N Mathimaran1, R Srivastava, A Wiemken, A K Sharma, T Boller.   

Abstract

Plant growth-promoting rhizobacterial (PGPR) strains R62 and R81 have previously been isolated and characterized as part of the Indo-Swiss Collaboration in Biotechnology. Here we present the draft genome sequences of these two PGPR strains, with the aim of unraveling the mechanisms behind their ability to promote wheat growth.

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Year:  2012        PMID： 22628504      PMCID： PMC3370877          DOI： 10.1128/JB.00349-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Improved microbial gene identification with GLIMMER.

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Review 2.  Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects.

Authors:  Stéphane Compant; Brion Duffy; Jerzy Nowak; Christophe Clément; Essaïd Ait Barka
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 3.  Plant-growth-promoting rhizobacteria.

Authors:  Ben Lugtenberg; Faina Kamilova
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Bacteria associated with spores of the arbuscular mycorrhizal fungi Glomus geosporum and Glomus constrictum.

Authors:  David Roesti; Kurt Ineichen; Olivier Braissant; Dirk Redecker; Andres Wiemken; Michel Aragno
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

6.  The Genomic Sequence of Pseudomonas fluorescens Pf-5: Insights Into Biological Control.

Authors:  Joyce E Loper; Donald Y Kobayashi; Ian T Paulsen
Journal:  Phytopathology       Date:  2007-02       Impact factor: 4.025

7.  xBASE2: a comprehensive resource for comparative bacterial genomics.

Authors:  Roy R Chaudhuri; Nicholas J Loman; Lori A S Snyder; Christopher M Bailey; Dov J Stekel; Mark J Pallen
Journal:  Nucleic Acids Res       Date:  2007-11-05       Impact factor: 16.971

8.  Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

Authors:  Mark W Silby; Ana M Cerdeño-Tárraga; Georgios S Vernikos; Stephen R Giddens; Robert W Jackson; Gail M Preston; Xue-Xian Zhang; Christina D Moon; Stefanie M Gehrig; Scott A C Godfrey; Christopher G Knight; Jacob G Malone; Zena Robinson; Andrew J Spiers; Simon Harris; Gregory L Challis; Alice M Yaxley; David Harris; Kathy Seeger; Lee Murphy; Simon Rutter; Rob Squares; Michael A Quail; Elizabeth Saunders; Konstantinos Mavromatis; Thomas S Brettin; Stephen D Bentley; Joanne Hothersall; Elton Stephens; Christopher M Thomas; Julian Parkhill; Stuart B Levy; Paul B Rainey; Nicholas R Thomson
Journal:  Genome Biol       Date:  2009-05-11       Impact factor: 13.583

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  9 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Rhizobacteria producing ACC deaminase mitigate water-stress response in finger millet (Eleusine coracana (L.) Gaertn.).

Authors:  Dinesh Chandra; Rashmi Srivastava; Bernard R Glick; Anil Kumar Sharma
Journal:  3 Biotech       Date:  2020-01-24       Impact factor: 2.406

3.  Unearthing the genomes of plant-beneficial Pseudomonas model strains WCS358, WCS374 and WCS417.

Authors:  Roeland L Berendsen; Marcel C van Verk; Ioannis A Stringlis; Christos Zamioudis; Jan Tommassen; Corné M J Pieterse; Peter A H M Bakker
Journal:  BMC Genomics       Date:  2015-07-22       Impact factor: 3.969

4.  Deep-rooted pigeon pea promotes the water relations and survival of shallow-rooted finger millet during drought-Despite strong competitive interactions at ambient water availability.

Authors:  Devesh Singh; Natarajan Mathimaran; Thomas Boller; Ansgar Kahmen
Journal:  PLoS One       Date:  2020-02-13       Impact factor: 3.240

5.  Microencapsulation of a Pseudomonas Strain (VUPF506) in Alginate-Whey Protein-Carbon Nanotubes and Next-Generation Sequencing Identification of This Strain.

Authors:  Fariba Fathi; Roohallah Saberi Riseh; Pejman Khodaygan; Samin Hosseini; Yury A Skorik
Journal:  Polymers (Basel)       Date:  2021-12-06       Impact factor: 4.329

6.  Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.

Authors:  Miguel Redondo-Nieto; Matthieu Barret; John Morrissey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Candela Muriel; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal:  BMC Genomics       Date:  2013-01-25       Impact factor: 3.969

Review 7.  Commonalities and differences of T3SSs in rhizobia and plant pathogenic bacteria.

Authors:  Anastasia P Tampakaki
Journal:  Front Plant Sci       Date:  2014-03-27       Impact factor: 5.753

8.  Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut.

Authors:  Alka Gupta; Murali Gopal; George V Thomas; Vinu Manikandan; John Gajewski; George Thomas; Somasekar Seshagiri; Stephan C Schuster; Preeti Rajesh; Ravi Gupta
Journal:  PLoS One       Date:  2014-08-27       Impact factor: 3.240

9.  Bridging the Gap: Type III Secretion Systems in Plant-Beneficial Bacteria.

Authors:  Antoine Zboralski; Adrien Biessy; Martin Filion
Journal:  Microorganisms       Date:  2022-01-15
  9 in total

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