Literature DB >> 22628500

Genome sequence of proteorhodopsin-containing sea ice bacterium Glaciecola punicea ACAM 611T.

Qi-Long Qin1, Bin-Bin Xie, Yan-Li Shu, Jin-Cheng Rong, Dian-Li Zhao, Xi-Ying Zhang, Xiu-Lan Chen, Bai-Cheng Zhou, Yu-Zhong Zhang.   

Abstract

Here, we report the draft genome sequence of Antarctic sea ice bacterium Glaciecola punicea ACAM 611(T), the type species of the genus Glaciecola. A blue-light-absorbing proteorhodopsin gene is present in the 3.08-Mb genome. This genome sequence can facilitate the study of the physiological metabolisms and ecological roles of sea ice bacteria.

Entities:  

Mesh：

Substances：

Year:  2012        PMID： 22628500      PMCID： PMC3370857          DOI： 10.1128/JB.00463-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

Review 1.  Antarctic Sea ice--a habitat for extremophiles.

Authors:  D N Thomas; G S Dieckmann
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

2.  Proteorhodopsin genes are distributed among divergent marine bacterial taxa.

Authors:  José R de la Torre; Lynne M Christianson; Oded Béjà; Marcelino T Suzuki; David M Karl; John Heidelberg; Edward F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-17       Impact factor: 11.205

3.  Proteorhodopsin-bearing bacteria in Antarctic sea ice.

Authors:  Eileen Y Koh; Nof Atamna-Ismaeel; Andrew Martin; Rebecca O M Cowie; Oded Beja; Simon K Davy; Elizabeth W Maas; Ken G Ryan
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

4.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

5.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

6.  KEGG: Kyoto Encyclopedia of Genes and Genomes.

Authors:  H Ogata; S Goto; K Sato; W Fujibuchi; H Bono; M Kanehisa
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

7.  Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5.

Authors:  Barbara Klippel; Adriane Lochner; David C Bruce; Karen Walston Davenport; Chris Detter; Lynne A Goodwin; James Han; Shunsheng Han; Miriam L Land; Natalia Mikhailova; Matt Nolan; Len Pennacchio; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Sigrid Wiebusch; Alexander Basner; Fumiyoshi Abe; Koki Horikoshi; Martin Keller; Garabed Antranikian
Journal:  J Bacteriol       Date:  2011-06-24       Impact factor: 3.490

8.  Complete genome sequence of seawater bacterium Glaciecola nitratireducens FR1064(T).

Authors:  Fei Bian; Qi-Long Qin; Bin-Bin Xie; Yan-Li Shu; Xi-Ying Zhang; Yong Yu; Bo Chen; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490
  8 in total
  1 in total

1.  Diversity of Phototrophic Genes Suggests Multiple Bacteria May Be Able to Exploit Sunlight in Exposed Soils from the Sør Rondane Mountains, East Antarctica.

Authors:  Guillaume Tahon; Bjorn Tytgat; Anne Willems
Journal:  Front Microbiol       Date:  2016-12-19       Impact factor: 5.640
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.