Literature DB >> 21705587

Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5.

Barbara Klippel1, Adriane Lochner, David C Bruce, Karen Walston Davenport, Chris Detter, Lynne A Goodwin, James Han, Shunsheng Han, Miriam L Land, Natalia Mikhailova, Matt Nolan, Len Pennacchio, Sam Pitluck, Roxanne Tapia, Tanja Woyke, Sigrid Wiebusch, Alexander Basner, Fumiyoshi Abe, Koki Horikoshi, Martin Keller, Garabed Antranikian.   

Abstract

Glaciecola sp. strain 4H-3-7+YE-5 was isolated from subseafloor sediments at Suruga Bay in Japan and is capable of efficiently hydrolyzing cellulose and xylan. The complete genome sequence of Glaciecola sp. 4H-3-7+YE-5 revealed several genes encoding putatively novel glycoside hydrolases, offering a high potential for plant biomass degradation.

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Year:  2011        PMID： 21705587      PMCID： PMC3165521          DOI： 10.1128/JB.05468-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  16 in total

1.  Glaciecola arctica sp. nov., isolated from Arctic marine sediment.

Authors:  Yan-Jiao Zhang; Xi-Ying Zhang; Zi-Hao Mi; Chun-Xiao Chen; Zhao-Ming Gao; Xiu-Lan Chen; Yong Yu; Bo Chen; Yu-Zhong Zhang
Journal:  Int J Syst Evol Microbiol       Date:  2010-10-29       Impact factor: 2.747

2.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

3.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors:  B Ewing; L Hillier; M C Wendl; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

4.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Glaciecola nitratireducens sp. nov., isolated from seawater.

Authors:  Keun Sik Baik; Yoon-Dong Park; Chi Nam Seong; Eun Mi Kim; Kyung Sook Bae; Jongsik Chun
Journal:  Int J Syst Evol Microbiol       Date:  2006-09       Impact factor: 2.747

7.  Glaciecola psychrophila sp. nov., a novel psychrophilic bacterium isolated from the Arctic.

Authors:  De-Chao Zhang; Yong Yu; Bo Chen; He-Xiang Wang; Hong-Can Liu; Xiu-Zhu Dong; Pei-Jin Zhou
Journal:  Int J Syst Evol Microbiol       Date:  2006-12       Impact factor: 2.747

8.  Glaciecola chathamensis sp. nov., a novel marine polysaccharide-producing bacterium.

Authors:  Hidetoshi Matsuyama; Toshikazu Hirabayashi; Hirokazu Kasahara; Hideki Minami; Tamotsu Hoshino; Isao Yumoto
Journal:  Int J Syst Evol Microbiol       Date:  2006-12       Impact factor: 2.747

9.  Glaciecola polaris sp. nov., a novel budding and prosthecate bacterium from the Arctic Ocean, and emended description of the genus Glaciecola.

Authors:  Stefanie Van Trappen; Tjhing-Lok Tan; Jifang Yang; Joris Mergaert; Jean Swings
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

10.  Glaciecola mesophila sp. nov., a novel marine agar-digesting bacterium.

Authors:  Lyudmila A Romanenko; Natalia V Zhukova; Manfred Rohde; Anatoly M Lysenko; Valery V Mikhailov; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2003-05       Impact factor: 2.747
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  11 in total

1.  Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 °N.

Authors:  Beatriz Fernández-Gómez; Beatriz Díez; Martin F Polz; José Ignacio Arroyo; Fernando D Alfaro; Germán Marchandon; Cynthia Sanhueza; Laura Farías; Nicole Trefault; Pablo A Marquet; Marco A Molina-Montenegro; Peter Sylvander; Pauline Snoeijs-Leijonmalm
Journal:  ISME J       Date:  2018-09-18       Impact factor: 10.302

2.  Genome sequence of proteorhodopsin-containing sea ice bacterium Glaciecola punicea ACAM 611T.

Authors:  Qi-Long Qin; Bin-Bin Xie; Yan-Li Shu; Jin-Cheng Rong; Dian-Li Zhao; Xi-Ying Zhang; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

3.  Complete genome sequence of seawater bacterium Glaciecola nitratireducens FR1064(T).

Authors:  Fei Bian; Qi-Long Qin; Bin-Bin Xie; Yan-Li Shu; Xi-Ying Zhang; Yong Yu; Bo Chen; Xiu-Lan Chen; Bai-Cheng Zhou; Yu-Zhong Zhang
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

4.  Carbohydrate-active enzymes identified by metagenomic analysis of deep-sea sediment bacteria.

Authors:  Barbara Klippel; Kerstin Sahm; Alexander Basner; Sigrid Wiebusch; Patrick John; Ute Lorenz; Anke Peters; Fumiyoshi Abe; Kyoma Takahashi; Olaf Kaiser; Alexander Goesmann; Sebastian Jaenicke; Ralf Grote; Koki Horikoshi; Garabed Antranikian
Journal:  Extremophiles       Date:  2014-08-10       Impact factor: 2.395

5.  Genomes of Alteromonas australica, a world apart.

Authors:  Mario López-Pérez; Aitor Gonzaga; Elena P Ivanova; Francisco Rodriguez-Valera
Journal:  BMC Genomics       Date:  2014-06-18       Impact factor: 3.969

6.  Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments.

Authors:  Lukasz Dziewit; Dariusz Bartosik
Journal:  Front Microbiol       Date:  2014-11-06       Impact factor: 5.640

7.  Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island.

Authors:  Eduard Fadeev; Fabio De Pascale; Alessandro Vezzi; Sariel Hübner; Dikla Aharonovich; Daniel Sher
Journal:  Front Microbiol       Date:  2016-03-08       Impact factor: 5.640

8.  The Hybrid Strategy of Thermoactinospora rubra YIM 77501T for Utilizing Cellulose as a Carbon Source at Different Temperatures.

Authors:  Yi-Rui Yin; Zhao-Hui Meng; Qing-Wen Hu; Zhao Jiang; Wen-Dong Xian; Lin-Hua Li; Wei Hu; Feng Zhang; En-Min Zhou; Xiao-Yang Zhi; Wen-Jun Li
Journal:  Front Microbiol       Date:  2017-05-29       Impact factor: 5.640

9.  Viral Ecogenomics of Arctic Cryopeg Brine and Sea Ice.

Authors:  Zhi-Ping Zhong; Josephine Z Rapp; James M Wainaina; Natalie E Solonenko; Heather Maughan; Shelly D Carpenter; Zachary S Cooper; Ho Bin Jang; Benjamin Bolduc; Jody W Deming; Matthew B Sullivan
Journal:  mSystems       Date:  2020-06-16       Impact factor: 6.496

10.  Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.

Authors:  Jeffrey A Kimbrel; Nicholas Ballor; Yu-Wei Wu; Maude M David; Terry C Hazen; Blake A Simmons; Steven W Singer; Janet K Jansson
Journal:  Front Microbiol       Date:  2018-07-10       Impact factor: 5.640
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