Literature DB >> 22619043

Conservation of chromosomes syntenic with avian autosomes in squamate reptiles revealed by comparative chromosome painting.

Martina Pokorná1, Massimo Giovannotti, Lukáš Kratochvíl, Vincenzo Caputo, Ettore Olmo, Malcolm A Ferguson-Smith, Willem Rens.   

Abstract

In contrast to mammals, birds exhibit a slow rate of chromosomal evolution. It is not clear whether high chromosome conservation is an evolutionary novelty of birds or was inherited from an earlier avian ancestor. The evolutionary conservatism of macrochromosomes between birds and turtles supports the latter possibility; however, the rate of chromosomal evolution is largely unknown in other sauropsids. In squamates, we previously reported strong conservatism of the chromosomes syntenic with the avian Z, which could reflect a peculiarity of this part of the genome. The chromosome 1 of iguanians and snakes is largely syntenic with chromosomes 3, 5 and 7 of the avian ancestral karyotype. In this project, we used comparative chromosome painting to determine how widely this synteny is conserved across nine families covering most of the main lineages of Squamata. The results suggest that the association of the avian ancestral chromosomes 3, 5 and 7 can be dated back to at least the early Jurassic and could be an ancestral characteristic for Unidentata (Serpentes, Iguania, Anguimorpha, Laterata and Scinciformata). In Squamata chromosome conservatism therefore also holds for the parts of the genome which are homologous to bird autosomes, and following on from this, a slow rate of chromosomal evolution could be a common characteristic of all sauropsids. The large evolutionary stasis in chromosome organization in birds therefore seems to be inherited from their ancestors, and it is particularly striking in comparison with mammals, probably the only major tetrapod lineage with an increased rate of chromosomal rearrangements as a whole.

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Year:  2012        PMID: 22619043     DOI: 10.1007/s00412-012-0371-z

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  30 in total

1.  Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes.

Authors:  Kazumi Matsubara; Hiroshi Tarui; Michihisa Toriba; Kazuhiko Yamada; Chizuko Nishida-Umehara; Kiyokazu Agata; Yoichi Matsuda
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-16       Impact factor: 11.205

2.  Cross-species chromosome painting.

Authors:  Willem Rens; Beiyuan Fu; Patricia C M O'Brien; Malcolm Ferguson-Smith
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  The phylogeny of the family Lacertidae (Reptilia) based on nuclear DNA sequences: convergent adaptations to arid habitats within the subfamily Eremiainae.

Authors:  Werner Mayer; Mihaela Pavlicev
Journal:  Mol Phylogenet Evol       Date:  2007-06-09       Impact factor: 4.286

Review 4.  Contrasting evolutionary dynamics between angiosperm and mammalian genomes.

Authors:  Eduard Kejnovsky; Ilia J Leitch; Andrew R Leitch
Journal:  Trends Ecol Evol       Date:  2009-08-06       Impact factor: 17.712

5.  Chromosomal evolution in Gekkonidae. I. Chromosome painting between Gekko and Hemidactylus species reveals phylogenetic relationships within the group.

Authors:  Vladimir A Trifonov; Massimo Giovannotti; Patricia C M O'Brien; Margaret Wallduck; Frances Lovell; Willem Rens; Patricia P Parise-Maltempi; Vincenzo Caputo; Malcolm A Ferguson-Smith
Journal:  Chromosome Res       Date:  2011-10-11       Impact factor: 5.239

6.  Skinks (Reptilia: Scincidae) have highly conserved karyotypes as revealed by chromosome painting.

Authors:  M Giovannotti; V Caputo; P C M O'Brien; F L Lovell; V Trifonov; P Nisi Cerioni; E Olmo; M A Ferguson-Smith; W Rens
Journal:  Cytogenet Genome Res       Date:  2010-03-06       Impact factor: 1.636

7.  Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes.

Authors:  H Telenius; A H Pelmear; A Tunnacliffe; N P Carter; A Behmel; M A Ferguson-Smith; M Nordenskjöld; R Pfragner; B A Ponder
Journal:  Genes Chromosomes Cancer       Date:  1992-04       Impact factor: 5.006

8.  Origin of avian genome size and structure in non-avian dinosaurs.

Authors:  Chris L Organ; Andrew M Shedlock; Andrew Meade; Mark Pagel; Scott V Edwards
Journal:  Nature       Date:  2007-03-08       Impact factor: 49.962

9.  The genome of the green anole lizard and a comparative analysis with birds and mammals.

Authors:  Jessica Alföldi; Federica Di Palma; Manfred Grabherr; Christina Williams; Lesheng Kong; Evan Mauceli; Pamela Russell; Craig B Lowe; Richard E Glor; Jacob D Jaffe; David A Ray; Stephane Boissinot; Andrew M Shedlock; Christopher Botka; Todd A Castoe; John K Colbourne; Matthew K Fujita; Ricardo Godinez Moreno; Boudewijn F ten Hallers; David Haussler; Andreas Heger; David Heiman; Daniel E Janes; Jeremy Johnson; Pieter J de Jong; Maxim Y Koriabine; Marcia Lara; Peter A Novick; Chris L Organ; Sally E Peach; Steven Poe; David D Pollock; Kevin de Queiroz; Thomas Sanger; Steve Searle; Jeremy D Smith; Zachary Smith; Ross Swofford; Jason Turner-Maier; Juli Wade; Sarah Young; Amonida Zadissa; Scott V Edwards; Travis C Glenn; Christopher J Schneider; Jonathan B Losos; Eric S Lander; Matthew Breen; Chris P Ponting; Kerstin Lindblad-Toh
Journal:  Nature       Date:  2011-08-31       Impact factor: 49.962

10.  Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird.

Authors:  Charles Chapus; Scott V Edwards
Journal:  BMC Genomics       Date:  2009-07-14       Impact factor: 3.969

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  22 in total

1.  Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota).

Authors:  Martina Johnson Pokorná; Vladimir A Trifonov; Willem Rens; Malcolm A Ferguson-Smith; Lukáš Kratochvíl
Journal:  Chromosome Res       Date:  2015-02-11       Impact factor: 5.239

2.  Conserved sex chromosomes and karyotype evolution in monitor lizards (Varanidae).

Authors:  Alessio Iannucci; Marie Altmanová; Claudio Ciofi; Malcolm Ferguson-Smith; Massimo Milan; Jorge Claudio Pereira; James Pether; Ivan Rehák; Michail Rovatsos; Roscoe Stanyon; Petr Velenský; Petr Ráb; Lukáš Kratochvíl; Martina Johnson Pokorná
Journal:  Heredity (Edinb)       Date:  2019-01-22       Impact factor: 3.821

3.  Multiple sex chromosomes in the light of female meiotic drive in amniote vertebrates.

Authors:  Martina Pokorná; Marie Altmanová; Lukáš Kratochvíl
Journal:  Chromosome Res       Date:  2014-04       Impact factor: 5.239

4.  CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.

Authors:  Heiner Kuhl; Ling Li; Sven Wuertz; Matthias Stöck; Xu-Fang Liang; Christophe Klopp
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

5.  Mammalian X homolog acts as sex chromosome in lacertid lizards.

Authors:  M Rovatsos; J Vukić; L Kratochvíl
Journal:  Heredity (Edinb)       Date:  2016-03-16       Impact factor: 3.821

6.  Molecular cytogenetic map of the central bearded dragon, Pogona vitticeps (Squamata: Agamidae).

Authors:  M J Young; D O'Meally; S D Sarre; A Georges; T Ezaz
Journal:  Chromosome Res       Date:  2013-05-24       Impact factor: 5.239

7.  A FISH-based chromosome map for the European corn borer yields insights into ancient chromosomal fusions in the silkworm.

Authors:  Y Yasukochi; M Ohno; F Shibata; A Jouraku; R Nakano; Y Ishikawa; K Sahara
Journal:  Heredity (Edinb)       Date:  2015-08-12       Impact factor: 3.821

8.  Anolis sex chromosomes are derived from a single ancestral pair.

Authors:  Tony Gamble; Anthony J Geneva; Richard E Glor; David Zarkower
Journal:  Evolution       Date:  2013-12-23       Impact factor: 3.694

9.  Sex chromosome evolution among amniotes: is the origin of sex chromosomes non-random?

Authors:  Lukáš Kratochvíl; Tony Gamble; Michail Rovatsos
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-07-26       Impact factor: 6.671

10.  Do male and female heterogamety really differ in expression regulation? Lack of global dosage balance in pygopodid geckos.

Authors:  Michail Rovatsos; Tony Gamble; Stuart V Nielsen; Arthur Georges; Tariq Ezaz; Lukáš Kratochvíl
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-07-26       Impact factor: 6.671

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