Literature DB >> 22610672

Constrained evolutionary algorithm for structure prediction of molecular crystals: methodology and applications.

Qiang Zhu1, Artem R Oganov, Colin W Glass, Harold T Stokes.   

Abstract

Evolutionary crystal structure prediction proved to be a powerful approach for studying a wide range of materials. Here we present a specifically designed algorithm for the prediction of the structure of complex crystals consisting of well defined molecular units. The main feature of this new approach is that each unit is treated as a whole body, which drastically reduces the search space and improves the efficiency, but necessitates the introduction of new variation operators described here. To increase the diversity of the population of structures, the initial population and part (~20%) of the new generations are produced using space-group symmetry combined with random cell parameters, and random positions and orientations of molecular units. We illustrate the efficiency and reliability of this approach by a number of tests (ice, ammonia, carbon dioxide, methane, benzene, glycine and butane-1,4-diammonium dibromide). This approach easily predicts the crystal structure of methane A containing 21 methane molecules (105 atoms) per unit cell. We demonstrate that this new approach also has a high potential for the study of complex inorganic crystals as shown on examples of a complex hydrogen storage material Mg(BH(4))(2) and elemental boron.

Entities:  

Year:  2012        PMID: 22610672     DOI: 10.1107/S0108768112017466

Source DB:  PubMed          Journal:  Acta Crystallogr B        ISSN: 0108-7681


  14 in total

1.  Crystal Structure Prediction from First Principles: The Crystal Structures of Glycine.

Authors:  Albert M Lund; Gabriel I Pagola; Anita M Orendt; Marta B Ferraro; Julio C Facelli
Journal:  Chem Phys Lett       Date:  2015-04-17       Impact factor: 2.328

2.  Accelerated discovery of two crystal structure types in a complex inorganic phase field.

Authors:  C Collins; M S Dyer; M J Pitcher; G F S Whitehead; M Zanella; P Mandal; J B Claridge; G R Darling; M J Rosseinsky
Journal:  Nature       Date:  2017-06-07       Impact factor: 49.962

3.  Prediction of a new ground state of superhard compound B6O at ambient conditions.

Authors:  Huafeng Dong; Artem R Oganov; Qinggao Wang; Sheng-Nan Wang; Zhenhai Wang; Jin Zhang; M Mahdi Davari Esfahani; Xiang-Feng Zhou; Fugen Wu; Qiang Zhu
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

4.  Convergence Properties of Crystal Structure Prediction by Quasi-Random Sampling.

Authors:  David H Case; Josh E Campbell; Peter J Bygrave; Graeme M Day
Journal:  J Chem Theory Comput       Date:  2016-01-13       Impact factor: 6.006

5.  Report on the sixth blind test of organic crystal structure prediction methods.

Authors:  Anthony M Reilly; Richard I Cooper; Claire S Adjiman; Saswata Bhattacharya; A Daniel Boese; Jan Gerit Brandenburg; Peter J Bygrave; Rita Bylsma; Josh E Campbell; Roberto Car; David H Case; Renu Chadha; Jason C Cole; Katherine Cosburn; Herma M Cuppen; Farren Curtis; Graeme M Day; Robert A DiStasio; Alexander Dzyabchenko; Bouke P van Eijck; Dennis M Elking; Joost A van den Ende; Julio C Facelli; Marta B Ferraro; Laszlo Fusti-Molnar; Christina Anna Gatsiou; Thomas S Gee; René de Gelder; Luca M Ghiringhelli; Hitoshi Goto; Stefan Grimme; Rui Guo; Detlef W M Hofmann; Johannes Hoja; Rebecca K Hylton; Luca Iuzzolino; Wojciech Jankiewicz; Daniël T de Jong; John Kendrick; Niek J J de Klerk; Hsin Yu Ko; Liudmila N Kuleshova; Xiayue Li; Sanjaya Lohani; Frank J J Leusen; Albert M Lund; Jian Lv; Yanming Ma; Noa Marom; Artëm E Masunov; Patrick McCabe; David P McMahon; Hugo Meekes; Michael P Metz; Alston J Misquitta; Sharmarke Mohamed; Bartomeu Monserrat; Richard J Needs; Marcus A Neumann; Jonas Nyman; Shigeaki Obata; Harald Oberhofer; Artem R Oganov; Anita M Orendt; Gabriel I Pagola; Constantinos C Pantelides; Chris J Pickard; Rafal Podeszwa; Louise S Price; Sarah L Price; Angeles Pulido; Murray G Read; Karsten Reuter; Elia Schneider; Christoph Schober; Gregory P Shields; Pawanpreet Singh; Isaac J Sugden; Krzysztof Szalewicz; Christopher R Taylor; Alexandre Tkatchenko; Mark E Tuckerman; Francesca Vacarro; Manolis Vasileiadis; Alvaro Vazquez-Mayagoitia; Leslie Vogt; Yanchao Wang; Rona E Watson; Gilles A de Wijs; Jack Yang; Qiang Zhu; Colin R Groom
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-08-01

6.  Stable reconstruction of the (110) surface and its role in pseudocapacitance of rutile-like RuO2.

Authors:  Hayk A Zakaryan; Alexander G Kvashnin; Artem R Oganov
Journal:  Sci Rep       Date:  2017-09-04       Impact factor: 4.379

7.  Equilibrium p-T phase diagram of boron: experimental study and thermodynamic analysis.

Authors:  Vladimir L Solozhenko; Oleksandr O Kurakevych
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

8.  Novel hydrogen hydrate structures under pressure.

Authors:  Guang-Rui Qian; Andriy O Lyakhov; Qiang Zhu; Artem R Oganov; Xiao Dong
Journal:  Sci Rep       Date:  2014-07-08       Impact factor: 4.379

9.  Diverse Chemistry of Stable Hydronitrogens, and Implications for Planetary and Materials Sciences.

Authors:  Guang-Rui Qian; Haiyang Niu; Chao-Hao Hu; Artem R Oganov; Qingfeng Zeng; Huai-Ying Zhou
Journal:  Sci Rep       Date:  2016-05-19       Impact factor: 4.379

10.  Nitrogen oxides under pressure: stability, ionization, polymerization, and superconductivity.

Authors:  Dongxu Li; Artem R Oganov; Xiao Dong; Xiang-Feng Zhou; Qiang Zhu; Guangrui Qian; Huafeng Dong
Journal:  Sci Rep       Date:  2015-11-17       Impact factor: 4.379

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