Literature DB >> 22606174

5-({3-[(5-Amino-1,3,4-thia-diazol-2-yl)sulfanylmeth-yl]benz-yl}sulfan-yl)-1,3,4-thia-diazol-2-amine.

Sung Kwon Kang1, Nam Sook Cho, Siyoung Jang.   

Abstract

In the title compound, C(12)H(12)N(6)S(4), the two terminal thia-diazole rings are twisted with respect to the central benzene ring, making dihedral angles of 54.28 (4) and 76.56 (3)°. The dihedral angle between the two thia-diazole rings is 27.77 (4)°. Inter-molecular N-H⋯N hydrogen bonds stabilize the crystal packing, linking the mol-ecules into a tape along the b axis.

Entities:  

Year:  2012        PMID: 22606174      PMCID: PMC3344171          DOI: 10.1107/S1600536812013116

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and reactivity of thia­diazole derivatives, see: Cho et al. (1993 ▶, 2001 ▶) and for the synthesis and reactivity of macrocyclic compounds with thia­diazole derivatives, see: Cho et al. (2002 ▶, 2006 ▶). For related structures of thia­diazole derivatives, see: Kang, Cho & Jang (2012 ▶); Kang, Cho & Jeon (2012 ▶).

Experimental

Crystal data

C12H12N6S4 M = 368.52 Monoclinic, a = 16.3579 (10) Å b = 6.1382 (4) Å c = 30.7095 (18) Å β = 90.373 (1)° V = 3083.4 (3) Å3 Z = 8 Mo Kα radiation μ = 0.62 mm−1 T = 296 K 0.14 × 0.12 × 0.06 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.91, T max = 0.96 22777 measured reflections 3836 independent reflections 2387 reflections with I > 2σ(I) R int = 0.082

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.077 S = 0.88 3836 reflections 199 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812013116/is5100sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013116/is5100Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013116/is5100Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N6S4F(000) = 1520
Mr = 368.52Dx = 1.588 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3247 reflections
a = 16.3579 (10) Åθ = 2.5–22.1°
b = 6.1382 (4) ŵ = 0.62 mm1
c = 30.7095 (18) ÅT = 296 K
β = 90.373 (1)°Block, colourless
V = 3083.4 (3) Å30.14 × 0.12 × 0.06 mm
Z = 8
Bruker SMART CCD area-detector diffractometer2387 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.082
φ and ω scansθmax = 28.3°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −21→21
Tmin = 0.91, Tmax = 0.96k = −8→8
22777 measured reflectionsl = −40→40
3836 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H-atom parameters constrained
S = 0.88w = 1/[σ2(Fo2) + (0.028P)2] where P = (Fo2 + 2Fc2)/3
3836 reflections(Δ/σ)max = 0.001
199 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.07088 (13)0.5674 (4)0.54356 (7)0.0349 (5)
C20.04110 (13)0.4333 (3)0.57612 (7)0.0355 (5)
H20.06090.29170.57840.043*
C3−0.01744 (12)0.5042 (4)0.60545 (7)0.0354 (5)
C4−0.04693 (13)0.7144 (4)0.60143 (8)0.0427 (6)
H4−0.08570.76580.62090.051*
C5−0.01915 (14)0.8485 (4)0.56860 (8)0.0462 (6)
H5−0.04060.98810.56570.055*
C60.04010 (14)0.7777 (4)0.54005 (7)0.0428 (6)
H60.05940.87060.51850.051*
C70.13626 (13)0.4864 (4)0.51346 (7)0.0400 (5)
H7A0.13060.56020.48570.048*
H7B0.1280.3320.50840.048*
S80.24002 (3)0.52863 (9)0.534089 (19)0.03947 (16)
C90.24017 (12)0.3680 (3)0.58115 (7)0.0327 (5)
S100.22830 (4)0.08693 (9)0.580246 (18)0.03689 (15)
C110.24370 (12)0.0940 (4)0.63625 (7)0.0324 (5)
N120.25717 (11)0.2911 (3)0.65155 (6)0.0376 (4)
N130.25390 (10)0.4480 (3)0.61950 (6)0.0357 (4)
N140.24306 (11)−0.0849 (3)0.66089 (6)0.0426 (5)
H14A0.2518−0.07520.68850.051*
H14B0.2339−0.210.64920.051*
C15−0.04979 (13)0.3540 (4)0.64040 (7)0.0430 (6)
H15A−0.09090.25990.62740.052*
H15B−0.07660.44180.66240.052*
S160.02620 (4)0.18512 (10)0.66701 (2)0.04862 (18)
C170.07177 (13)0.3682 (3)0.70332 (7)0.0363 (5)
S180.06869 (4)0.64865 (10)0.69824 (2)0.04757 (18)
C190.12945 (13)0.6580 (4)0.74495 (7)0.0391 (5)
N200.14884 (12)0.4662 (3)0.76028 (6)0.0430 (5)
N210.11434 (12)0.2993 (3)0.73582 (6)0.0455 (5)
N220.15219 (12)0.8447 (3)0.76364 (6)0.0564 (6)
H22A0.18120.84280.78710.068*
H22B0.13780.96690.75220.068*
U11U22U33U12U13U23
C10.0349 (12)0.0417 (14)0.0280 (12)−0.0008 (10)−0.0064 (10)−0.0027 (10)
C20.0362 (12)0.0349 (13)0.0352 (13)0.0035 (10)−0.0030 (10)−0.0004 (10)
C30.0317 (12)0.0423 (14)0.0321 (12)−0.0024 (10)−0.0065 (10)−0.0041 (10)
C40.0346 (13)0.0476 (15)0.0459 (15)0.0054 (11)−0.0044 (11)−0.0113 (12)
C50.0479 (14)0.0370 (14)0.0536 (16)0.0071 (11)−0.0094 (13)−0.0018 (12)
C60.0462 (14)0.0424 (15)0.0396 (14)−0.0021 (11)−0.0070 (12)0.0072 (11)
C70.0456 (13)0.0470 (14)0.0274 (12)−0.0006 (11)−0.0020 (10)0.0012 (10)
S80.0410 (3)0.0396 (3)0.0378 (3)−0.0032 (3)0.0021 (3)0.0052 (3)
C90.0325 (12)0.0314 (12)0.0342 (12)0.0007 (9)−0.0004 (10)−0.0016 (10)
S100.0477 (3)0.0329 (3)0.0300 (3)−0.0021 (3)−0.0028 (3)−0.0039 (2)
C110.0291 (11)0.0390 (13)0.0293 (12)0.0001 (10)−0.0014 (9)0.0001 (10)
N120.0464 (11)0.0360 (11)0.0303 (10)−0.0010 (9)−0.0045 (9)−0.0034 (8)
N130.0402 (11)0.0322 (11)0.0346 (11)0.0009 (8)−0.0033 (9)−0.0035 (8)
N140.0574 (13)0.0386 (11)0.0317 (11)−0.0075 (10)−0.0053 (9)0.0026 (9)
C150.0394 (13)0.0529 (15)0.0368 (13)−0.0049 (11)0.0008 (11)−0.0068 (11)
S160.0673 (4)0.0363 (4)0.0422 (4)−0.0041 (3)−0.0036 (3)0.0014 (3)
C170.0404 (13)0.0365 (13)0.0320 (13)−0.0004 (10)0.0039 (10)0.0041 (10)
S180.0620 (4)0.0349 (3)0.0455 (4)−0.0020 (3)−0.0187 (3)0.0072 (3)
C190.0411 (13)0.0430 (15)0.0331 (13)−0.0007 (11)−0.0043 (10)0.0065 (11)
N200.0550 (13)0.0369 (12)0.0370 (11)0.0018 (10)−0.0075 (10)0.0058 (9)
N210.0605 (13)0.0370 (12)0.0389 (12)0.0034 (10)−0.0054 (10)0.0045 (9)
N220.0771 (16)0.0392 (12)0.0525 (14)−0.0017 (11)−0.0322 (12)0.0058 (10)
C1—C21.386 (3)S10—C111.737 (2)
C1—C61.390 (3)C11—N121.316 (3)
C1—C71.503 (3)C11—N141.334 (3)
C2—C31.389 (3)N12—N131.378 (2)
C2—H20.93N14—H14A0.86
C3—C41.383 (3)N14—H14B0.86
C3—C151.513 (3)C15—S161.810 (2)
C4—C51.381 (3)C15—H15A0.97
C4—H40.93C15—H15B0.97
C5—C61.381 (3)S16—C171.747 (2)
C5—H50.93C17—N211.285 (3)
C6—H60.93C17—S181.729 (2)
C7—S81.826 (2)S18—C191.741 (2)
C7—H7A0.97C19—N201.306 (3)
C7—H7B0.97C19—N221.333 (3)
S8—C91.749 (2)N20—N211.388 (2)
C9—N131.294 (2)N22—H22A0.86
C9—S101.737 (2)N22—H22B0.86
C2—C1—C6118.6 (2)C9—S10—C1186.78 (10)
C2—C1—C7120.16 (19)N12—C11—N14123.81 (19)
C6—C1—C7121.2 (2)N12—C11—S10113.52 (16)
C1—C2—C3121.9 (2)N14—C11—S10122.66 (17)
C1—C2—H2119C11—N12—N13112.45 (17)
C3—C2—H2119C9—N13—N12113.00 (17)
C4—C3—C2118.4 (2)C11—N14—H14A120
C4—C3—C15120.6 (2)C11—N14—H14B120
C2—C3—C15121.0 (2)H14A—N14—H14B120
C5—C4—C3120.3 (2)C3—C15—S16115.29 (15)
C5—C4—H4119.8C3—C15—H15A108.5
C3—C4—H4119.8S16—C15—H15A108.5
C4—C5—C6120.8 (2)C3—C15—H15B108.5
C4—C5—H5119.6S16—C15—H15B108.5
C6—C5—H5119.6H15A—C15—H15B107.5
C5—C6—C1119.9 (2)C17—S16—C15102.05 (11)
C5—C6—H6120N21—C17—S18114.41 (17)
C1—C6—H6120N21—C17—S16120.73 (17)
C1—C7—S8113.78 (15)S18—C17—S16124.80 (13)
C1—C7—H7A108.8C17—S18—C1986.69 (11)
S8—C7—H7A108.8N20—C19—N22123.6 (2)
C1—C7—H7B108.8N20—C19—S18113.79 (17)
S8—C7—H7B108.8N22—C19—S18122.63 (17)
H7A—C7—H7B107.7C19—N20—N21111.92 (18)
C9—S8—C7101.71 (10)C17—N21—N20113.17 (18)
N13—C9—S10114.22 (16)C19—N22—H22A120
N13—C9—S8122.50 (16)C19—N22—H22B120
S10—C9—S8123.17 (12)H22A—N22—H22B120
D—H···AD—HH···AD···AD—H···A
N14—H14A···N20i0.862.273.005 (3)144
N14—H14B···N13ii0.862.313.142 (2)162
N22—H22A···N12iii0.862.153.007 (3)171
N22—H22B···N21iv0.862.142.982 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N14—H14A⋯N20i0.862.273.005 (3)144
N14—H14B⋯N13ii0.862.313.142 (2)162
N22—H22A⋯N12iii0.862.153.007 (3)171
N22—H22B⋯N21iv0.862.142.982 (3)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Sung Kwon Kang; Nam Sook Cho; Siyoung Jang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21

3.  N-(5-Eth-oxy-1,3,4-thia-diazol-2-yl)benzamide.

Authors:  Sung Kwon Kang; Nam Sook Cho; Min Kyeong Jeon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-31
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