Literature DB >> 22606147

5α-Hy-droxy-eudesm-4(15),11(13)-dien-8β,12-olide.

Xue Gao1, Gang Chen.   

Abstract

The title compound, C(15)H(20)O(3), a sesquiterpene lactone, was isolated from the aerial parts of Carpesium minus Hemsl. (Compositae). The mol-ecule is composed of three rings, with the two cyclo-hexane rings in chair conformations and the cyclo-pentane ring adopting a twist conformation. The A/B ring junction is trans-fused. The absolute configuration shown has been arbitrarily assigned. In the crystal, mol-ecules are linked into [100] chains by O-H⋯O hydrogen bonds.

Entities:  

Year:  2012        PMID: 22606147      PMCID: PMC3344144          DOI: 10.1107/S1600536812012470

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation and biological activity of the title compound, see: Lee et al. (2002 ▶); Yang et al. (2002 ▶); Li et al. (2011 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H20O3 M = 248.31 Monoclinic, a = 7.893 (2) Å b = 7.034 (2) Å c = 12.166 (4) Å β = 101.154 (3)° V = 662.7 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.23 × 0.20 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.981, T max = 0.984 3673 measured reflections 1323 independent reflections 1159 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.084 S = 1.08 1323 reflections 165 parameters 1 restraint H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812012470/rn2102sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H20O3F(000) = 268
Mr = 248.31Dx = 1.244 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 7.893 (2) ÅCell parameters from 1583 reflections
b = 7.034 (2) Åθ = 2.9–23.8°
c = 12.166 (4) ŵ = 0.09 mm1
β = 101.154 (3)°T = 296 K
V = 662.7 (3) Å3Block, colorless
Z = 20.23 × 0.20 × 0.19 mm
Bruker APEXII CCD diffractometer1323 independent reflections
Radiation source: fine-focus sealed tube1159 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 25.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −9→9
Tmin = 0.981, Tmax = 0.984k = −8→7
3673 measured reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.046P)2 + 0.026P] where P = (Fo2 + 2Fc2)/3
1323 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.12 e Å3
1 restraintΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5831 (3)0.5040 (4)0.2805 (2)0.0451 (6)
H10.58430.64320.28440.054*
C20.6238 (3)0.4471 (4)0.1686 (2)0.0462 (6)
H2A0.70880.53530.15040.055*
H2B0.51970.46180.11200.055*
C30.6920 (3)0.2446 (4)0.16056 (19)0.0404 (6)
C40.7625 (4)0.2265 (4)0.0514 (2)0.0534 (7)
H4A0.66770.2421−0.01180.064*
H4B0.84420.32850.04860.064*
C50.8506 (4)0.0380 (5)0.0400 (2)0.0663 (9)
H5A0.89980.0396−0.02720.080*
H5B0.7660−0.06350.03250.080*
C60.9931 (4)−0.0002 (5)0.1417 (2)0.0619 (8)
H6A1.0384−0.12750.13670.074*
H6B1.08680.08930.14250.074*
C70.9243 (3)0.0189 (4)0.2486 (2)0.0428 (6)
C80.8428 (3)0.2111 (3)0.26178 (18)0.0370 (5)
C90.7793 (3)0.2326 (3)0.37155 (18)0.0364 (5)
H9A0.87530.21090.43320.044*
H9B0.69310.13570.37520.044*
C100.7006 (3)0.4286 (3)0.38653 (18)0.0391 (5)
H100.79210.52080.41420.047*
C110.5786 (3)0.4143 (3)0.46605 (19)0.0397 (5)
C120.4025 (3)0.4029 (3)0.3975 (2)0.0439 (6)
C130.5451 (3)0.0994 (4)0.1587 (2)0.0491 (6)
H13A0.46070.11470.09100.074*
H13B0.49170.12020.22220.074*
H13C0.5915−0.02710.16180.074*
C140.9291 (3)−0.1238 (4)0.3199 (2)0.0514 (6)
H14A0.9759−0.24010.30490.062*
H14B0.8857−0.10790.38520.062*
C150.6070 (3)0.4053 (4)0.5758 (2)0.0516 (7)
H15A0.51490.39130.61270.062*
H15B0.71920.41280.61680.062*
O10.9648 (2)0.3595 (3)0.25349 (15)0.0503 (5)
H1A1.05150.34450.30210.075*
O20.40859 (19)0.4391 (3)0.28997 (13)0.0530 (5)
O30.2681 (2)0.3667 (3)0.42676 (14)0.0585 (5)
U11U22U33U12U13U23
C10.0446 (14)0.0397 (13)0.0508 (14)0.0042 (11)0.0082 (11)0.0056 (12)
C20.0434 (13)0.0513 (15)0.0420 (13)0.0031 (12)0.0038 (10)0.0127 (12)
C30.0365 (12)0.0485 (15)0.0358 (12)0.0004 (11)0.0058 (10)0.0046 (11)
C40.0549 (15)0.0681 (19)0.0381 (13)0.0003 (15)0.0112 (11)0.0055 (13)
C50.0695 (19)0.083 (2)0.0496 (16)0.0125 (18)0.0210 (14)−0.0051 (15)
C60.0571 (17)0.072 (2)0.0608 (17)0.0137 (15)0.0213 (14)−0.0028 (15)
C70.0332 (12)0.0468 (14)0.0473 (14)0.0009 (11)0.0050 (10)−0.0027 (12)
C80.0299 (11)0.0393 (12)0.0405 (12)−0.0064 (10)0.0037 (9)0.0032 (10)
C90.0331 (12)0.0388 (13)0.0346 (12)−0.0009 (10)−0.0001 (9)0.0001 (10)
C100.0360 (12)0.0373 (13)0.0421 (12)−0.0046 (11)0.0030 (9)−0.0010 (11)
C110.0380 (12)0.0347 (12)0.0463 (13)−0.0018 (11)0.0077 (10)−0.0058 (10)
C120.0395 (13)0.0425 (14)0.0491 (14)0.0017 (11)0.0076 (10)−0.0060 (11)
C130.0422 (14)0.0570 (16)0.0447 (14)−0.0085 (12)0.0003 (11)−0.0044 (12)
C140.0465 (14)0.0438 (15)0.0634 (16)0.0054 (12)0.0096 (12)−0.0006 (13)
C150.0537 (15)0.0541 (16)0.0471 (15)0.0042 (13)0.0099 (11)−0.0043 (12)
O10.0357 (9)0.0532 (11)0.0608 (11)−0.0118 (8)0.0062 (7)0.0067 (9)
O20.0357 (9)0.0746 (13)0.0470 (10)0.0067 (9)0.0036 (7)0.0005 (9)
O30.0364 (9)0.0772 (13)0.0632 (11)−0.0042 (9)0.0130 (8)−0.0094 (10)
C1—O21.476 (3)C7—C81.519 (3)
C1—C21.512 (3)C8—O11.437 (3)
C1—C101.531 (3)C8—C91.522 (3)
C1—H10.9800C9—C101.538 (3)
C2—C31.533 (4)C9—H9A0.9700
C2—H2A0.9700C9—H9B0.9700
C2—H2B0.9700C10—C111.495 (3)
C3—C41.541 (3)C10—H100.9800
C3—C131.542 (3)C11—C151.312 (3)
C3—C81.556 (3)C11—C121.478 (3)
C4—C51.516 (4)C12—O31.210 (3)
C4—H4A0.9700C12—O21.342 (3)
C4—H4B0.9700C13—H13A0.9600
C5—C61.526 (4)C13—H13B0.9600
C5—H5A0.9700C13—H13C0.9600
C5—H5B0.9700C14—H14A0.9300
C6—C71.509 (3)C14—H14B0.9300
C6—H6A0.9700C15—H15A0.9300
C6—H6B0.9700C15—H15B0.9300
C7—C141.323 (4)O1—H1A0.8200
O2—C1—C2110.7 (2)O1—C8—C7109.61 (18)
O2—C1—C10104.44 (17)O1—C8—C9109.18 (19)
C2—C1—C10117.9 (2)C7—C8—C9113.54 (19)
O2—C1—H1107.8O1—C8—C3104.78 (17)
C2—C1—H1107.8C7—C8—C3109.00 (19)
C10—C1—H1107.8C9—C8—C3110.37 (17)
C1—C2—C3116.2 (2)C8—C9—C10113.71 (18)
C1—C2—H2A108.2C8—C9—H9A108.8
C3—C2—H2A108.2C10—C9—H9A108.8
C1—C2—H2B108.2C8—C9—H9B108.8
C3—C2—H2B108.2C10—C9—H9B108.8
H2A—C2—H2B107.4H9A—C9—H9B107.7
C2—C3—C4108.73 (19)C11—C10—C1101.97 (17)
C2—C3—C13110.1 (2)C11—C10—C9109.97 (19)
C4—C3—C13109.2 (2)C1—C10—C9113.80 (19)
C2—C3—C8108.32 (19)C11—C10—H10110.3
C4—C3—C8108.73 (18)C1—C10—H10110.3
C13—C3—C8111.67 (18)C9—C10—H10110.3
C5—C4—C3113.5 (2)C15—C11—C12121.9 (2)
C5—C4—H4A108.9C15—C11—C10131.1 (2)
C3—C4—H4A108.9C12—C11—C10106.96 (19)
C5—C4—H4B108.9O3—C12—O2121.7 (2)
C3—C4—H4B108.9O3—C12—C11128.9 (2)
H4A—C4—H4B107.7O2—C12—C11109.43 (19)
C4—C5—C6111.1 (3)C3—C13—H13A109.5
C4—C5—H5A109.4C3—C13—H13B109.5
C6—C5—H5A109.4H13A—C13—H13B109.5
C4—C5—H5B109.4C3—C13—H13C109.5
C6—C5—H5B109.4H13A—C13—H13C109.5
H5A—C5—H5B108.0H13B—C13—H13C109.5
C7—C6—C5110.5 (2)C7—C14—H14A120.0
C7—C6—H6A109.5C7—C14—H14B120.0
C5—C6—H6A109.5H14A—C14—H14B120.0
C7—C6—H6B109.5C11—C15—H15A120.0
C5—C6—H6B109.5C11—C15—H15B120.0
H6A—C6—H6B108.1H15A—C15—H15B120.0
C14—C7—C6121.9 (2)C8—O1—H1A109.5
C14—C7—C8124.4 (2)C12—O2—C1110.15 (17)
C6—C7—C8113.6 (2)
O2—C1—C2—C3−83.6 (3)C2—C3—C8—C960.6 (2)
C10—C1—C2—C336.5 (3)C4—C3—C8—C9178.6 (2)
C1—C2—C3—C4−168.0 (2)C13—C3—C8—C9−60.9 (2)
C1—C2—C3—C1372.4 (3)O1—C8—C9—C1056.0 (2)
C1—C2—C3—C8−49.9 (3)C7—C8—C9—C10178.61 (18)
C2—C3—C4—C5174.0 (2)C3—C8—C9—C10−58.7 (2)
C13—C3—C4—C5−65.8 (3)O2—C1—C10—C11−26.1 (2)
C8—C3—C4—C556.2 (3)C2—C1—C10—C11−149.3 (2)
C3—C4—C5—C6−54.6 (3)O2—C1—C10—C992.3 (2)
C4—C5—C6—C752.6 (3)C2—C1—C10—C9−31.0 (3)
C5—C6—C7—C14120.5 (3)C8—C9—C10—C11156.08 (18)
C5—C6—C7—C8−56.6 (3)C8—C9—C10—C142.4 (2)
C14—C7—C8—O1127.5 (3)C1—C10—C11—C15−160.4 (3)
C6—C7—C8—O1−55.5 (3)C9—C10—C11—C1578.5 (3)
C14—C7—C8—C95.1 (3)C1—C10—C11—C1222.0 (2)
C6—C7—C8—C9−177.9 (2)C9—C10—C11—C12−99.1 (2)
C14—C7—C8—C3−118.4 (3)C15—C11—C12—O3−7.9 (4)
C6—C7—C8—C358.6 (2)C10—C11—C12—O3170.0 (3)
C2—C3—C8—O1−56.8 (2)C15—C11—C12—O2172.5 (2)
C4—C3—C8—O161.2 (2)C10—C11—C12—O2−9.7 (3)
C13—C3—C8—O1−178.3 (2)O3—C12—O2—C1172.3 (2)
C2—C3—C8—C7−174.07 (19)C11—C12—O2—C1−8.1 (3)
C4—C3—C8—C7−56.1 (2)C2—C1—O2—C12149.8 (2)
C13—C3—C8—C764.5 (2)C10—C1—O2—C1222.0 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3i0.822.062.868 (2)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O3i0.822.062.868 (2)168

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiproliferative and apoptotic sesquiterpene lactones from Carpesium faberi.

Authors:  Xu-Wen Li; Liang Weng; Xue Gao; Yun Zhao; Fei Pang; Jian-Hui Liu; Hong-Feng Zhang; Jin-Feng Hu
Journal:  Bioorg Med Chem Lett       Date:  2010-11-05       Impact factor: 2.823

3.  Cytotoxic sesquiterpene lactones from Carpesium abrotanoides.

Authors:  JunSung Lee; ByungSun Min; SangMyung Lee; MinKyun Na; ByungMok Kwon; ChongOck Lee; YoungHo Kim; KiHwan Bae
Journal:  Planta Med       Date:  2002-08       Impact factor: 3.352

4.  Sesquiterpene lactone glycosides, eudesmanolides, and other constituents from Carpesium macrocephalum.

Authors:  Chao Yang; Yan-Ping Shi; Zhong-Jian Jia
Journal:  Planta Med       Date:  2002-07       Impact factor: 3.352

  4 in total

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